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Aliases for RAET1E-AS1 Gene

Subcategory (RNA class) for RAET1E-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAET1E-AS1 Gene

  • RAET1E Antisense RNA 1 2 3 5
  • RAET1G-AS1 3

External Ids for RAET1E-AS1 Gene

Previous GeneCards Identifiers for RAET1E-AS1 Gene

  • GC06P150205

Summaries for RAET1E-AS1 Gene

GeneCards Summary for RAET1E-AS1 Gene

RAET1E-AS1 (RAET1E Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAET1E-AS1 Gene

Genomics for RAET1E-AS1 Gene

Regulatory Elements for RAET1E-AS1 Gene


Promoters for RAET1E-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001230525 502 2800 ARID4B SIN3A DMAP1 ZNF48 ZNF2 ZNF766 GLIS2 ZNF143 SP3 JUNB

Genomic Location for RAET1E-AS1 Gene

Chromosome:
6
Start:
149,863,498 bp from pter
End:
149,919,508 bp from pter
Size:
56,011 bases
Orientation:
Plus strand

Genomic View for RAET1E-AS1 Gene

Genes around RAET1E-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAET1E-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAET1E-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAET1E-AS1 Gene

Proteins for RAET1E-AS1 Gene

Post-translational modifications for RAET1E-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAET1E-AS1 Gene

Domains & Families for RAET1E-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAET1E-AS1 Gene

Function for RAET1E-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAET1E-AS1 Gene

Localization for RAET1E-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAET1E-AS1 Gene

Pathways & Interactions for RAET1E-AS1 Gene

SuperPathways for RAET1E-AS1 Gene

No Data Available

Interacting Proteins for RAET1E-AS1 Gene

Gene Ontology (GO) - Biological Process for RAET1E-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAET1E-AS1 Gene

Transcripts for RAET1E-AS1 Gene

mRNA/cDNA for RAET1E-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAET1E-AS1 Gene

No ASD Table

Relevant External Links for RAET1E-AS1 Gene

GeneLoc Exon Structure for
RAET1E-AS1
ECgene alternative splicing isoforms for
RAET1E-AS1

Expression for RAET1E-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RAET1E-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RAET1E-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x9.3), Vagina (x7.7), Testis (x6.0), and Cervix - Ectocervix (x4.4).
genes like me logo Genes that share expression patterns with RAET1E-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RAET1E-AS1 Gene

Orthologs for RAET1E-AS1 Gene

Evolution for RAET1E-AS1 Gene

ENSEMBL:
Gene Tree for RAET1E-AS1 (if available)
TreeFam:
Gene Tree for RAET1E-AS1 (if available)

No data available for Orthologs for RAET1E-AS1 Gene

Paralogs for RAET1E-AS1 Gene

No data available for Paralogs for RAET1E-AS1 Gene

Variants for RAET1E-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAET1E-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10080756 -- 149,861,696(+) tattt(C/T)ttttt intron-variant, upstream-variant-2KB
rs10223799 -- 149,900,870(+) TATTC(G/T)CCAGG intron-variant
rs10428740 -- 149,879,936(+) aGAGT(A/C/T)GCGGG intron-variant
rs10440890 -- 149,884,436(+) GGCTG(G/T)CAGCG intron-variant, reference, utr-variant-3-prime, stop-lost
rs10457852 -- 149,880,584(+) GTGTT(A/G)CATTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RAET1E-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3890963 CNV loss 25118596
nsv473433 CNV novel sequence insertion 20440878
nsv517022 CNV gain+loss 19592680
nsv819758 CNV loss 19587683
nsv823860 CNV gain 20364138
nsv970172 CNV duplication 23825009

Relevant External Links for RAET1E-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAET1E-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAET1E-AS1 Gene

Disorders for RAET1E-AS1 Gene

Relevant External Links for RAET1E-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAET1E-AS1

No disorders were found for RAET1E-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAET1E-AS1 Gene

Publications for RAET1E-AS1 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RAET1E-AS1 Gene

Sources for RAET1E-AS1 Gene

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