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Aliases for RAET1E-AS1 Gene

Subcategory (RNA class) for RAET1E-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAET1E-AS1 Gene

  • RAET1E Antisense RNA 1 5 2 3
  • RAET1G-AS1 3

External Ids for RAET1E-AS1 Gene

Previous GeneCards Identifiers for RAET1E-AS1 Gene

  • GC06P150205

Summaries for RAET1E-AS1 Gene

GeneCards Summary for RAET1E-AS1 Gene

RAET1E-AS1 (RAET1E Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAET1E-AS1 Gene

Genomics for RAET1E-AS1 Gene

Regulatory Elements for RAET1E-AS1 Gene


Promoters for RAET1E-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RAET1E-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RAET1E-AS1 Gene

Chromosome:
6
Start:
149,863,498 bp from pter
End:
149,919,508 bp from pter
Size:
56,011 bases
Orientation:
Plus strand

Genomic View for RAET1E-AS1 Gene

Genes around RAET1E-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAET1E-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAET1E-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAET1E-AS1 Gene

Proteins for RAET1E-AS1 Gene

Post-translational modifications for RAET1E-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAET1E-AS1 Gene

Domains & Families for RAET1E-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAET1E-AS1 Gene

Function for RAET1E-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAET1E-AS1 Gene

Localization for RAET1E-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAET1E-AS1 Gene

Pathways & Interactions for RAET1E-AS1 Gene

SuperPathways for RAET1E-AS1 Gene

No Data Available

Interacting Proteins for RAET1E-AS1 Gene

Gene Ontology (GO) - Biological Process for RAET1E-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAET1E-AS1 Gene

Drugs & Compounds for RAET1E-AS1 Gene

No Compound Related Data Available

Transcripts for RAET1E-AS1 Gene

mRNA/cDNA for RAET1E-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAET1E-AS1 Gene

No ASD Table

Relevant External Links for RAET1E-AS1 Gene

GeneLoc Exon Structure for
RAET1E-AS1
ECgene alternative splicing isoforms for
RAET1E-AS1

Expression for RAET1E-AS1 Gene

mRNA expression in normal human tissues for RAET1E-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RAET1E-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x9.3), Vagina (x7.7), Testis (x6.0), and Cervix - Ectocervix (x4.4).
genes like me logo Genes that share expression patterns with RAET1E-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RAET1E-AS1 Gene

Orthologs for RAET1E-AS1 Gene

Evolution for RAET1E-AS1 Gene

ENSEMBL:
Gene Tree for RAET1E-AS1 (if available)
TreeFam:
Gene Tree for RAET1E-AS1 (if available)

No data available for Orthologs for RAET1E-AS1 Gene

Paralogs for RAET1E-AS1 Gene

No data available for Paralogs for RAET1E-AS1 Gene

Variants for RAET1E-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAET1E-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs5880859 -- 149,900,838(+) CTGTT(-/G)TTTTC intron-variant
rs6557165 -- 149,906,883(+) CCAAC(C/G)ACTAG intron-variant
rs6900184 -- 149,914,055(+) GAGAA(A/T)CCTCT intron-variant
rs6905778 -- 149,914,797(+) atagt(A/T)ttagg intron-variant
rs6910537 -- 149,910,139(+) TTCTG(A/C)CACAG intron-variant

Relevant External Links for RAET1E-AS1 Gene

HapMap Linkage Disequilibrium report
RAET1E-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RAET1E-AS1 Gene

Disorders for RAET1E-AS1 Gene

Relevant External Links for RAET1E-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAET1E-AS1

No disorders were found for RAET1E-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAET1E-AS1 Gene

Publications for RAET1E-AS1 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for RAET1E-AS1 Gene

Sources for RAET1E-AS1 Gene

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