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Aliases for RADIL Gene

Aliases for RADIL Gene

  • Rap Associating With DIL Domain 2 3 5
  • Ras Association And DIL Domains 2 3
  • Ras-Associating And Dilute Domain-Containing Protein 3
  • Rap GTPase Interactor 3
  • KIAA1849 4
  • RASIP2 3

External Ids for RADIL Gene

Previous GeneCards Identifiers for RADIL Gene

  • GC07M004804
  • GC07M004836
  • GC07M004755

Summaries for RADIL Gene

GeneCards Summary for RADIL Gene

RADIL (Rap Associating With DIL Domain) is a Protein Coding gene. An important paralog of this gene is RASIP1.

UniProtKB/Swiss-Prot for RADIL Gene

  • Downstream effector of Rap required for cell adhesion and migration of neural crest precursors during development.

Gene Wiki entry for RADIL Gene

Additional gene information for RADIL Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RADIL Gene

Genomics for RADIL Gene

Regulatory Elements for RADIL Gene

Enhancers for RADIL Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H004881 1 ENCODE 19.9 +0.9 920 2.2 ATF1 ARNT SIN3A GLIS2 ZNF143 ATF7 SP3 SP5 NFYC ZC3H11A RADIL RPL22P16
GH07H004871 0.5 ENCODE 28 +11.1 11052 1.4 PKNOX1 POLR2A MNT RCOR1 RADIL RPL22P16
GH07H004774 1.1 ENCODE 11 +108.1 108058 3.1 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF766 ZNF143 AP5Z1 RBAK RNF216P1 TNRC18 RADIL GC07P004785
GH07H005085 1 Ensembl ENCODE 11 -201.9 -201884 0.4 CTCF RB1 MAX ZNF2 ZBTB7B RAD21 CC2D1A POLR2A SMC3 ZNF143 RADIL WIPI2 AP5Z1 RBAKDN OR10AH1P
GH07H004791 0.9 Ensembl ENCODE 8.9 +91.5 91521 2.3 CTCF MXI1 POLR2A ZNF143 MAX ZBTB33 FOXP2 CREM AP5Z1 RADIL MIR4656 GC07P004807
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RADIL on UCSC Golden Path with GeneCards custom track

Promoters for RADIL Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000208037 319 801 TBP RB1 ARNT KLF17 SIN3A BMI1 RAD21 RFX5 GLIS2 EGR1

Genomic Locations for RADIL Gene

Genomic Locations for RADIL Gene
chr7:4,797,055-4,883,719
(GRCh38/hg38)
Size:
86,665 bases
Orientation:
Minus strand
chr7:4,836,686-4,923,350
(GRCh37/hg19)

Genomic View for RADIL Gene

Genes around RADIL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RADIL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RADIL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RADIL Gene

Proteins for RADIL Gene

  • Protein details for RADIL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96JH8-RADIL_HUMAN
    Recommended name:
    Ras-associating and dilute domain-containing protein
    Protein Accession:
    Q96JH8
    Secondary Accessions:
    • A4D1Z5
    • A5YM49
    • B7ZL20
    • Q0VFZ9
    • Q75LH3
    • Q9BSP5
    • Q9H0M6
    • Q9NW43
    • Q9NWC4

    Protein attributes for RADIL Gene

    Size:
    1075 amino acids
    Molecular mass:
    117455 Da
    Quaternary structure:
    • Interacts with RAP1A; in a GTP-dependent manner. Does not interact with members of the Ras family (PubMed:17704304). Interacts (via PDZ domain) with KIF14; is recruited to the microtubule network restricting its interaction with activated RAP1A (PubMed:23209302).
    SequenceCaution:
    • Sequence=AAS07559.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=BAA91543.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB47478.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for RADIL Gene

    Alternative splice isoforms for RADIL Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RADIL Gene

Post-translational modifications for RADIL Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RADIL Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RADIL Gene

Domains & Families for RADIL Gene

Gene Families for RADIL Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Suggested Antigen Peptide Sequences for RADIL Gene

Graphical View of Domain Structure for InterPro Entry

Q96JH8

UniProtKB/Swiss-Prot:

RADIL_HUMAN :
  • Belongs to the RADIL family.
Family:
  • Belongs to the RADIL family.
genes like me logo Genes that share domains with RADIL: view

Function for RADIL Gene

Molecular function for RADIL Gene

UniProtKB/Swiss-Prot Function:
Downstream effector of Rap required for cell adhesion and migration of neural crest precursors during development.

Phenotypes From GWAS Catalog for RADIL Gene

Gene Ontology (GO) - Molecular Function for RADIL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 15324660
genes like me logo Genes that share ontologies with RADIL: view
genes like me logo Genes that share phenotypes with RADIL: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RADIL Gene

Localization for RADIL Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RADIL gene
Compartment Confidence
cytoskeleton 5
mitochondrion 2
nucleus 2
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nuclear membrane (2)
  • Nucleus (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for RADIL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005874 microtubule IDA 23209302
genes like me logo Genes that share ontologies with RADIL: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RADIL Gene

Pathways & Interactions for RADIL Gene

SuperPathways for RADIL Gene

No Data Available

Gene Ontology (GO) - Biological Process for RADIL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007155 cell adhesion IEA --
GO:0007165 signal transduction IEA --
GO:0007275 multicellular organism development IEA --
GO:0034446 substrate adhesion-dependent cell spreading IDA 23209302
genes like me logo Genes that share ontologies with RADIL: view

No data available for Pathways by source and SIGNOR curated interactions for RADIL Gene

Drugs & Compounds for RADIL Gene

No Compound Related Data Available

Transcripts for RADIL Gene

Unigene Clusters for RADIL Gene

Ras association and DIL domains:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RADIL Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ^ 13 ^ 14a · 14b · 14c ^ 15 ^ 16 ^
SP1:
SP2:
SP3: -
SP4: -
SP5:
SP6: -
SP7:
SP8:
SP9:
SP10: - -

ExUns: 17
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:

Relevant External Links for RADIL Gene

GeneLoc Exon Structure for
RADIL
ECgene alternative splicing isoforms for
RADIL

Expression for RADIL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RADIL Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of RADIL Gene:

RADIL

SOURCE GeneReport for Unigene cluster for RADIL Gene:

Hs.667336

Evidence on tissue expression from TISSUES for RADIL Gene

  • Nervous system(4.2)
  • Lung(4.1)
  • Heart(4)
  • Skin(4)
genes like me logo Genes that share expression patterns with RADIL: view

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RADIL Gene

Orthologs for RADIL Gene

This gene was present in the common ancestor of chordates.

Orthologs for RADIL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RADIL 33 34
  • 98.73 (n)
dog
(Canis familiaris)
Mammalia RADIL 33 34
  • 84.56 (n)
cow
(Bos Taurus)
Mammalia RADIL 33 34
  • 82.99 (n)
rat
(Rattus norvegicus)
Mammalia Radil 33
  • 81.16 (n)
mouse
(Mus musculus)
Mammalia Radil 33 16 34
  • 80.74 (n)
oppossum
(Monodelphis domestica)
Mammalia RADIL 34
  • 63 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RADIL 34
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves RADIL 33 34
  • 68.94 (n)
lizard
(Anolis carolinensis)
Reptilia RADIL 34
  • 54 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii radil 33 34 34
  • 58.01 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 30 (a)
OneToMany
Species where no ortholog for RADIL was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RADIL Gene

ENSEMBL:
Gene Tree for RADIL (if available)
TreeFam:
Gene Tree for RADIL (if available)

Paralogs for RADIL Gene

Paralogs for RADIL Gene

(5) SIMAP similar genes for RADIL Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with RADIL: view

Variants for RADIL Gene

Sequence variations from dbSNP and Humsavar for RADIL Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000020499 -- 4,819,719(+) TTTCC(C/T)GCAGA intron-variant
rs1000052134 -- 4,874,152(+) AGGCC(A/G)TGCAG intron-variant
rs1000066065 -- 4,879,976(+) AAATA(C/T)TTCCG intron-variant
rs1000083275 -- 4,837,528(+) CCAAG(A/C)CAAAG intron-variant
rs1000083496 -- 4,880,089(+) ACCAC(A/G)GCAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RADIL Gene

Variant ID Type Subtype PubMed ID
nsv970439 CNV duplication 23825009
nsv950798 CNV deletion 24416366
nsv950797 CNV deletion 24416366
nsv823994 CNV gain 20364138
nsv8033 CNV loss 18304495
nsv605980 CNV loss 21841781
nsv605979 CNV loss 21841781
nsv605978 CNV gain 21841781
nsv605977 CNV loss 21841781
nsv5626 CNV insertion 18451855
nsv528748 CNV loss 19592680
nsv473014 CNV novel sequence insertion 20440878
nsv471293 CNV loss 18288195
nsv1029123 CNV loss 25217958
esv3611952 CNV loss 21293372
esv3611950 CNV loss 21293372
esv3611949 CNV loss 21293372
esv3571582 CNV loss 25503493
esv3364985 CNV insertion 20981092
esv28123 CNV loss 19812545
esv2733904 CNV deletion 23290073
esv2664593 CNV deletion 23128226
dgv6238n100 CNV loss 25217958
dgv1249e214 CNV loss 21293372

Variation tolerance for RADIL Gene

Residual Variation Intolerance Score: 95.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.88; 91.83% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RADIL Gene

Human Gene Mutation Database (HGMD)
RADIL
SNPedia medical, phenotypic, and genealogical associations of SNPs for
RADIL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RADIL Gene

Disorders for RADIL Gene

Relevant External Links for RADIL

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RADIL

No disorders were found for RADIL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RADIL Gene

Publications for RADIL Gene

  1. A Rap GTPase interactor, RADIL, mediates migration of neural crest precursors. (PMID: 17704304) Smolen GA … Haber DA (Genes & development 2007) 2 3 4 60
  2. KIF14 negatively regulates Rap1a-Radil signaling during breast cancer progression. (PMID: 23209302) Ahmed SM … Angers S (The Journal of cell biology 2012) 3 4 60
  3. AF6 negatively regulates Rap1-induced cell adhesion. (PMID: 16051602) Zhang Z … Bos JL (The Journal of biological chemistry 2005) 2 3 60
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60

Products for RADIL Gene

Sources for RADIL Gene

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