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Aliases for RAD54L Gene

Aliases for RAD54L Gene

  • RAD54-Like (S. Cerevisiae) 2 3
  • HRAD54 3 4 6
  • RAD54 Homolog 3 4
  • RAD54A 3 4
  • HHR54 3 4
  • HR54 3 6
  • DNA Repair And Recombination Protein RAD54-Like 3
  • RAD54 (S.Cerevisiae)-Like 2
  • EC 3.6.4.- 4
  • EC 3.6.1 63

External Ids for RAD54L Gene

Summaries for RAD54L Gene

Entrez Gene Summary for RAD54L Gene

  • The protein encoded by this gene belongs to the DEAD-like helicase superfamily, and shares similarity with Saccharomyces cerevisiae Rad54, a protein known to be involved in the homologous recombination and repair of DNA. This protein has been shown to play a role in homologous recombination related repair of DNA double-strand breaks. The binding of this protein to double-strand DNA induces a DNA topological change, which is thought to facilitate homologous DNA paring, and stimulate DNA recombination. Alternative splicing results in multiple transcript variants encoding the same protein.[provided by RefSeq, Dec 2008]

GeneCards Summary for RAD54L Gene

RAD54L (RAD54-Like (S. Cerevisiae)) is a Protein Coding gene. Diseases associated with RAD54L include lymphoma, non-hodgkin and familial chronic lymphocytic leukemia. Among its related pathways are Integrated Breast Cancer Pathway and Homologous recombination. GO annotations related to this gene include helicase activity and annealing helicase activity. An important paralog of this gene is ATRX.

UniProtKB/Swiss-Prot for RAD54L Gene

  • Involved in DNA repair and mitotic recombination. Functions in the recombinational DNA repair (RAD52) pathway. Dissociates RAD51 from nucleoprotein filaments formed on dsDNA. Could be involved in the turnover of RAD51 protein-dsDNA filaments (By similarity). May play also an essential role in telomere length maintenance and telomere capping in mammalian cells.

Gene Wiki entry for RAD54L Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAD54L Gene

Genomics for RAD54L Gene

Genomic Location for RAD54L Gene

Start:
46,247,688 bp from pter
End:
46,278,473 bp from pter
Size:
30,786 bases
Orientation:
Plus strand

Genomic View for RAD54L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RAD54L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAD54L Gene

Regulatory Elements for RAD54L Gene

Proteins for RAD54L Gene

  • Protein details for RAD54L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q92698-RAD54_HUMAN
    Recommended name:
    DNA repair and recombination protein RAD54-like
    Protein Accession:
    Q92698
    Secondary Accessions:
    • Q5TE31
    • Q6IUY3

    Protein attributes for RAD54L Gene

    Size:
    747 amino acids
    Molecular mass:
    84352 Da
    Quaternary structure:
    • Interacts (via N-terminus) with RAD51.

neXtProt entry for RAD54L Gene

Proteomics data for RAD54L Gene at MOPED

Selected DME Specific Peptides for RAD54L Gene

Post-translational modifications for RAD54L Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys302

Domains for RAD54L Gene

Protein Domains for RAD54L Gene

Suggested Antigen Peptide Sequences for RAD54L Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q92698

UniProtKB/Swiss-Prot:

RAD54_HUMAN
Domain:
  • Contains 1 helicase ATP-binding domain.:
    • Q92698
  • Contains 1 helicase C-terminal domain.:
    • Q92698
Family:
  • Belongs to the SNF2/RAD54 helicase family.:
    • Q92698
genes like me logo Genes that share domains with RAD54L: view

No data available for Gene Families for RAD54L Gene

Function for RAD54L Gene

Molecular function for RAD54L Gene

GENATLAS Biochemistry: yeast (S cerevisiae) RAD54 homolog,93kDa,SNF2/SW12 family,highly expressed in organs of germ cells and lymphoid development,recombinational protein associated with RAD51,involved in nucleotide excision repair of double-strand break and in meiotic recombination,RAD52 epistasis group,localized in a region of high loss of heterozygosity in breast cancer,potential tumor suppressor in parathyroid adenomas (see TSG1J) and in breast cancer with poor prognosis
UniProtKB/Swiss-Prot Function: Involved in DNA repair and mitotic recombination. Functions in the recombinational DNA repair (RAD52) pathway. Dissociates RAD51 from nucleoprotein filaments formed on dsDNA. Could be involved in the turnover of RAD51 protein-dsDNA filaments (By similarity). May play also an essential role in telomere length maintenance and telomere capping in mammalian cells.
UniProtKB/Swiss-Prot Induction: Expression increases approximately 3-fold in late G1 phase compared to other phases of the cell cycle

Enzyme Numbers (IUBMB) for RAD54L Gene

Gene Ontology (GO) - Molecular Function for RAD54L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0004386 helicase activity IEA --
GO:0005515 protein binding IPI 22153077
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with RAD54L: view
genes like me logo Genes that share phenotypes with RAD54L: view

Animal Models for RAD54L Gene

MGI Knock Outs for RAD54L:

miRNA for RAD54L Gene

miRTarBase miRNAs that target RAD54L

No data available for Transcription Factor Targeting and HOMER Transcription for RAD54L Gene

Localization for RAD54L Gene

Subcellular locations from UniProtKB/Swiss-Prot for RAD54L Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RAD54L Gene COMPARTMENTS Subcellular localization image for RAD54L gene
Compartment Confidence
nucleus 5
cytosol 1

Gene Ontology (GO) - Cellular Components for RAD54L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus TAS 8805304
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with RAD54L: view

Pathways for RAD54L Gene

genes like me logo Genes that share pathways with RAD54L: view

Pathways by source for RAD54L Gene

1 BioSystems pathway for RAD54L Gene
1 KEGG pathway for RAD54L Gene

Gene Ontology (GO) - Biological Process for RAD54L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000724 double-strand break repair via homologous recombination IEA --
GO:0000733 DNA strand renaturation IDA 22705370
GO:0006281 DNA repair TAS 8805304
GO:0006302 double-strand break repair --
GO:0006310 DNA recombination TAS 8805304
genes like me logo Genes that share ontologies with RAD54L: view

Compounds for RAD54L Gene

(1) Novoseek inferred chemical compound relationships for RAD54L Gene

Compound -log(P) Hits PubMed IDs
atp 47.2 4
genes like me logo Genes that share compounds with RAD54L: view

Transcripts for RAD54L Gene

Unigene Clusters for RAD54L Gene

RAD54-like (S. cerevisiae):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAD54L Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16
SP1:
SP2: -
SP3:
SP4:
SP5:

Relevant External Links for RAD54L Gene

GeneLoc Exon Structure for
RAD54L
ECgene alternative splicing isoforms for
RAD54L

Expression for RAD54L Gene

mRNA expression in normal human tissues for RAD54L Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RAD54L Gene

This gene is overexpressed in Testis (6.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RAD54L Gene

SOURCE GeneReport for Unigene cluster for RAD54L Gene Hs.642042

genes like me logo Genes that share expressions with RAD54L: view

No data available for mRNA Expression by UniProt/SwissProt for RAD54L Gene

Orthologs for RAD54L Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RAD54L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RAD54L 35
  • 99.64 (n)
  • 99.6 (a)
RAD54L 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RAD54L 35
  • 91.33 (n)
  • 94.5 (a)
RAD54L 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RAD54L 35
  • 91.42 (n)
  • 94.91 (a)
RAD54L 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rad54l 35
  • 89.54 (n)
  • 94.5 (a)
Rad54l 16
Rad54l 36
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RAD54L 36
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RAD54L 36
  • 40 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rad54l 35
  • 88.2 (n)
  • 93.83 (a)
chicken
(Gallus gallus)
Aves RAD54L 35
  • 76.34 (n)
  • 85.02 (a)
RAD54L 36
  • 85 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RAD54L 36
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rad54l 35
  • 73.41 (n)
  • 83.54 (a)
zebrafish
(Danio rerio)
Actinopterygii rad54l 35
  • 72 (n)
  • 80.6 (a)
rad54l 36
  • 80 (a)
OneToOne
zgc56289 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008748 35
  • 61.01 (n)
  • 62.32 (a)
fruit fly
(Drosophila melanogaster)
Insecta okr 35
  • 58.02 (n)
  • 55.98 (a)
okr 36
  • 53 (a)
OneToOne
okr 37
  • 54 (a)
worm
(Caenorhabditis elegans)
Secernentea rad-54 35
  • 56.84 (n)
  • 59.43 (a)
rad-54 36
  • 50 (a)
OneToOne
Y116A8C.13 37
  • 34 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AEL297W 35
  • 53.51 (n)
  • 51.98 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RAD54 35
  • 54.26 (n)
  • 53.13 (a)
RAD54 36
  • 39 (a)
OneToMany
RAD54 38
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0A03069g 35
  • 53.12 (n)
  • 52.45 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons RAD54 35
  • 53.41 (n)
  • 49.25 (a)
rice
(Oryza sativa)
Liliopsida Os02g0762800 35
  • 54.37 (n)
  • 50.2 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU11255 35
  • 57.38 (n)
  • 57.65 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rhp54 35
  • 54.81 (n)
  • 55.68 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.1041 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 63 (a)
OneToOne
Species with no ortholog for RAD54L:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RAD54L Gene

ENSEMBL:
Gene Tree for RAD54L (if available)
TreeFam:
Gene Tree for RAD54L (if available)

Paralogs for RAD54L Gene

Paralogs for RAD54L Gene

Selected SIMAP similar genes for RAD54L Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with RAD54L: view

Variants for RAD54L Gene

Sequence variations from dbSNP and Humsavar for RAD54L Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1258474 -- 46,255,524(+) GACAT(A/G)GTCTT intron-variant
rs1887238 -- 46,253,716(-) AGAGT(A/C)CCTAA intron-variant
rs1887239 -- 46,253,633(-) TTTTG(G/T)GTGAA intron-variant
rs3063981 -- 46,253,720(-) aaaaA(-/AAAAA)GAGTA intron-variant
rs4506412 -- 46,248,009(+) CTCTC(C/T)TGGCC intron-variant, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for RAD54L Gene

Variant ID Type Subtype PubMed ID
nsv470711 CNV Gain 18288195
nsv829748 CNV Loss 17160897

Relevant External Links for RAD54L Gene

HapMap Linkage Disequilibrium report
RAD54L
Human Gene Mutation Database (HGMD)
RAD54L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RAD54L Gene

Disorders for RAD54L Gene

(2) OMIM Diseases for RAD54L Gene (603615)

(1) University of Copenhagen DISEASES for RAD54L Gene

(5) Novoseek inferred disease relationships for RAD54L Gene

Disease -log(P) Hits PubMed IDs
bloom syndrome 72.1 1
werner syndrome 68.3 1
allelic imbalance 68.2 1
xeroderma pigmentosum 59 1
tumors 4.24 8

Relevant External Links for RAD54L

Genetic Association Database (GAD)
RAD54L
Human Genome Epidemiology (HuGE) Navigator
RAD54L
genes like me logo Genes that share disorders with RAD54L: view

No data available for UniProtKB/Swiss-Prot for RAD54L Gene

Publications for RAD54L Gene

  1. Characterization of the human homologue of RAD54: a gene located on chromosome 1p32 at a region of high loss of heterozygosity in breast tumors. (PMID: 9192813) Rasio D. … Croce C.M. (Cancer Res. 1997) 3 4 23
  2. The architecture of the human Rad54-DNA complex provides evidence for protein translocation along DNA. (PMID: 11459989) Ristic D. … Kanaar R. (Proc. Natl. Acad. Sci. U.S.A. 2001) 3 4 23
  3. Homologous DNA pairing by human recombination factors Rad51 and Rad54. (PMID: 12205100) Sigurdsson S. … Sung P. (J. Biol. Chem. 2002) 3 4 23
  4. Human and mouse homologs of the Saccharomyces cerevisiae RAD54 DNA repair gene: evidence for functional conservation. (PMID: 8805304) Kanaar R. … Hoeijmakers J.H.J. (Curr. Biol. 1996) 2 3 4
  5. Implications of a RAD54L polymorphism (2290C/T) in human meningiomas as a risk factor and/or a genetic marker. (PMID: 12614485) Leone P.E. … PestaA+a A. (BMC Cancer 2003) 3 48

Products for RAD54L Gene

Sources for RAD54L Gene

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