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Aliases for RAD54L Gene

Aliases for RAD54L Gene

  • RAD54 Like 2 3
  • RAD54 Like (S. Cerevisiae) 2 5
  • RAD54 Homolog 3 4
  • RAD54A 3 4
  • HRAD54 3 4
  • HHR54 3 4
  • DNA Repair And Recombination Protein RAD54-Like 3
  • RAD54 (S.Cerevisiae)-Like 2
  • EC 3.6.4.- 4
  • EC 3.6.1 58
  • HR54 3

External Ids for RAD54L Gene

Previous GeneCards Identifiers for RAD54L Gene

  • GC01P046407
  • GC01P045670
  • GC01P046099
  • GC01P046083
  • GC01P046425
  • GC01P046485
  • GC01P046713
  • GC01P044829

Summaries for RAD54L Gene

Entrez Gene Summary for RAD54L Gene

  • The protein encoded by this gene belongs to the DEAD-like helicase superfamily, and shares similarity with Saccharomyces cerevisiae Rad54, a protein known to be involved in the homologous recombination and repair of DNA. This protein has been shown to play a role in homologous recombination related repair of DNA double-strand breaks. The binding of this protein to double-strand DNA induces a DNA topological change, which is thought to facilitate homologous DNA paring, and stimulate DNA recombination. Alternative splicing results in multiple transcript variants encoding the same protein.[provided by RefSeq, Dec 2008]

GeneCards Summary for RAD54L Gene

RAD54L (RAD54 Like) is a Protein Coding gene. Diseases associated with RAD54L include Lymphoma, Non-Hodgkin and Colon Adenocarcinoma. Among its related pathways are DNA Damage and Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA). GO annotations related to this gene include nucleic acid binding and helicase activity. An important paralog of this gene is ATRX.

UniProtKB/Swiss-Prot for RAD54L Gene

  • Involved in DNA repair and mitotic recombination. Functions in the recombinational DNA repair (RAD52) pathway. Dissociates RAD51 from nucleoprotein filaments formed on dsDNA. Could be involved in the turnover of RAD51 protein-dsDNA filaments (By similarity). May play also an essential role in telomere length maintenance and telomere capping in mammalian cells.

Gene Wiki entry for RAD54L Gene

Additional gene information for RAD54L Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAD54L Gene

Genomics for RAD54L Gene

Regulatory Elements for RAD54L Gene

Enhancers for RAD54L Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H046196 1.3 ENCODE dbSUPER 11.2 -49.4 -49443 2.8 HDGF ARNT SIN3A DMAP1 TCF12 ELK1 ZNF143 ATF7 RUNX3 SP3 LURAP1 TOE1 GPBP1L1 LRRC41 POMGNT1 TSPAN1 PIK3R3 LOC110117498 RAD54L RPL7AP16
GH01H046202 1 ENCODE 11.8 -43.0 -42950 4.4 ATF1 ARNT ZNF2 ZNF121 GLIS2 ZNF143 KLF7 ATF7 SP3 ZNF518A LURAP1 NSUN4 ZSWIM5 RAD54L LOC110117498 TSPAN1 PIK3R3 MUTYH POMGNT1
GH01H046210 0.4 ENCODE 12 -36.7 -36670 1.2 FOSL1 IKZF1 RAD54L FAAHP1 POMGNT1 LURAP1
GH01H046190 0.4 dbSUPER 10.7 -56.7 -56743 1.4 ZIC2 LURAP1 POMGNT1 RAD54L ENSG00000226957 PIK3R3
GH01H046186 0.2 dbSUPER 10.7 -61.3 -61322 0.3 LURAP1 ENSG00000226957 POMGNT1 RAD54L PIK3R3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RAD54L on UCSC Golden Path with GeneCards custom track

Promoters for RAD54L Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000005940 -88 1601 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143

Genomic Locations for RAD54L Gene

Genomic Locations for RAD54L Gene
chr1:46,247,688-46,278,473
(GRCh38/hg38)
Size:
30,786 bases
Orientation:
Plus strand
chr1:46,713,360-46,744,145
(GRCh37/hg19)

Genomic View for RAD54L Gene

Genes around RAD54L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAD54L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAD54L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAD54L Gene

Proteins for RAD54L Gene

  • Protein details for RAD54L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q92698-RAD54_HUMAN
    Recommended name:
    DNA repair and recombination protein RAD54-like
    Protein Accession:
    Q92698
    Secondary Accessions:
    • Q5TE31
    • Q6IUY3

    Protein attributes for RAD54L Gene

    Size:
    747 amino acids
    Molecular mass:
    84352 Da
    Quaternary structure:
    • Interacts (via N-terminus) with RAD51.

neXtProt entry for RAD54L Gene

Selected DME Specific Peptides for RAD54L Gene

Q92698:
  • GTIEEKI
  • DEMGLGKT
  • LRPHQREG
  • DILSKYLPVK
  • MGLGKTL
  • LMWTLLRQ
  • RVWRDGQK

Post-translational modifications for RAD54L Gene

  • Ubiquitination at isoforms=302
  • Modification sites at PhosphoSitePlus

Domains & Families for RAD54L Gene

Gene Families for RAD54L Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for RAD54L Gene

Suggested Antigen Peptide Sequences for RAD54L Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q92698

UniProtKB/Swiss-Prot:

RAD54_HUMAN :
  • Belongs to the SNF2/RAD54 helicase family.
Family:
  • Belongs to the SNF2/RAD54 helicase family.
genes like me logo Genes that share domains with RAD54L: view

Function for RAD54L Gene

Molecular function for RAD54L Gene

GENATLAS Biochemistry:
yeast (S cerevisiae) RAD54 homolog,93kDa,SNF2/SW12 family,highly expressed in organs of germ cells and lymphoid development,recombinational protein associated with RAD51,involved in nucleotide excision repair of double-strand break and in meiotic recombination,RAD52 epistasis group,localized in a region of high loss of heterozygosity in breast cancer,potential tumor suppressor in parathyroid adenomas (see TSG1J) and in breast cancer with poor prognosis
UniProtKB/Swiss-Prot Function:
Involved in DNA repair and mitotic recombination. Functions in the recombinational DNA repair (RAD52) pathway. Dissociates RAD51 from nucleoprotein filaments formed on dsDNA. Could be involved in the turnover of RAD51 protein-dsDNA filaments (By similarity). May play also an essential role in telomere length maintenance and telomere capping in mammalian cells.
UniProtKB/Swiss-Prot Induction:
Expression increases approximately 3-fold in late G1 phase compared to other phases of the cell cycle.

Enzyme Numbers (IUBMB) for RAD54L Gene

Gene Ontology (GO) - Molecular Function for RAD54L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0004386 helicase activity IEA --
GO:0005515 protein binding IPI 16990250
GO:0005524 ATP binding IEA --
GO:0016787 hydrolase activity IEA --
genes like me logo Genes that share ontologies with RAD54L: view
genes like me logo Genes that share phenotypes with RAD54L: view

Human Phenotype Ontology for RAD54L Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for RAD54L Gene

MGI Knock Outs for RAD54L:

Animal Model Products

miRNA for RAD54L Gene

miRTarBase miRNAs that target RAD54L

Clone Products

No data available for Phenotypes From GWAS Catalog , Transcription Factor Targets and HOMER Transcription for RAD54L Gene

Localization for RAD54L Gene

Subcellular locations from UniProtKB/Swiss-Prot for RAD54L Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RAD54L gene
Compartment Confidence
nucleus 5
cytosol 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for RAD54L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus TAS 8805304
GO:0005654 nucleoplasm IDA --
GO:0043234 protein complex IMP 16990250
genes like me logo Genes that share ontologies with RAD54L: view

Pathways & Interactions for RAD54L Gene

genes like me logo Genes that share pathways with RAD54L: view

Pathways by source for RAD54L Gene

1 Cell Signaling Technology pathway for RAD54L Gene
1 BioSystems pathway for RAD54L Gene
1 KEGG pathway for RAD54L Gene

Gene Ontology (GO) - Biological Process for RAD54L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000724 double-strand break repair via homologous recombination IEA --
GO:0000733 DNA strand renaturation IEA --
GO:0006281 DNA repair TAS 8805304
GO:0006302 double-strand break repair IEA --
GO:0006310 DNA recombination TAS 8805304
genes like me logo Genes that share ontologies with RAD54L: view

No data available for SIGNOR curated interactions for RAD54L Gene

Drugs & Compounds for RAD54L Gene

(3) Drugs for RAD54L Gene - From: ClinicalTrials and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Rucaparib Approved, Investigational Pharma PARP inhibitor, PARP Inhibitors, Other 16
Poly(ADP-ribose) Polymerase Inhibitors Pharma 354
genes like me logo Genes that share compounds with RAD54L: view

Transcripts for RAD54L Gene

Unigene Clusters for RAD54L Gene

RAD54-like (S. cerevisiae):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RAD54L Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16
SP1:
SP2: -
SP3:
SP4:
SP5:

Relevant External Links for RAD54L Gene

GeneLoc Exon Structure for
RAD54L
ECgene alternative splicing isoforms for
RAD54L

Expression for RAD54L Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAD54L Gene

mRNA differential expression in normal tissues according to GTEx for RAD54L Gene

This gene is overexpressed in Testis (x6.9).

Protein differential expression in normal tissues from HIPED for RAD54L Gene

This gene is overexpressed in Cerebrospinal fluid (35.2), Neutrophil (15.3), Colon (7.2), and Synovial fluid (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for RAD54L Gene



Protein tissue co-expression partners for RAD54L Gene

NURSA nuclear receptor signaling pathways regulating expression of RAD54L Gene:

RAD54L

SOURCE GeneReport for Unigene cluster for RAD54L Gene:

Hs.642042

Phenotype-based relationships between genes and organs from Gene ORGANizer for RAD54L Gene

Germ Layers:
  • ectoderm
  • mesoderm
Systems:
  • immune
  • integumentary
  • reproductive
  • skeletal muscle
Organs:
Thorax:
  • breast
General:
  • blood
  • white blood cell
genes like me logo Genes that share expression patterns with RAD54L: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Evidence on tissue expression from TISSUES for RAD54L Gene

Orthologs for RAD54L Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RAD54L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RAD54L 33 34
  • 99.64 (n)
dog
(Canis familiaris)
Mammalia RAD54L 33 34
  • 91.42 (n)
cow
(Bos Taurus)
Mammalia RAD54L 33 34
  • 91.33 (n)
mouse
(Mus musculus)
Mammalia Rad54l 16 34 33
  • 89.54 (n)
rat
(Rattus norvegicus)
Mammalia Rad54l 33
  • 88.2 (n)
oppossum
(Monodelphis domestica)
Mammalia RAD54L 34
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RAD54L 34
  • 40 (a)
OneToOne
chicken
(Gallus gallus)
Aves RAD54L 33 34
  • 76.34 (n)
lizard
(Anolis carolinensis)
Reptilia RAD54L 34
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rad54l 33
  • 73.41 (n)
zebrafish
(Danio rerio)
Actinopterygii rad54l 33 34
  • 72 (n)
zgc56289 33
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008748 33
  • 61.01 (n)
fruit fly
(Drosophila melanogaster)
Insecta okr 35 33 34
  • 58.02 (n)
worm
(Caenorhabditis elegans)
Secernentea rad-54 33 34
  • 56.84 (n)
Y116A8C.13 35
  • 34 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RAD54 33 34 36
  • 54.26 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AEL297W 33
  • 53.51 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0A03069g 33
  • 53.12 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons RAD54 33
  • 53.41 (n)
rice
(Oryza sativa)
Liliopsida Os02g0762800 33
  • 54.37 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 63 (a)
OneToOne
bread mold
(Neurospora crassa)
Ascomycetes NCU11255 33
  • 57.38 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rhp54 33
  • 54.81 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.1041 33
Species where no ortholog for RAD54L was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RAD54L Gene

ENSEMBL:
Gene Tree for RAD54L (if available)
TreeFam:
Gene Tree for RAD54L (if available)

Paralogs for RAD54L Gene

Paralogs for RAD54L Gene

(3) SIMAP similar genes for RAD54L Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with RAD54L: view

Variants for RAD54L Gene

Sequence variations from dbSNP and Humsavar for RAD54L Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs121908688 Pathogenic, A colon adenocarcinoma sample 46,250,097(+) ACCAC(A/C)TTGTC reference, missense, utr-variant-5-prime
rs121908689 Pathogenic, A non-Hodgkin lymphoma sample 46,272,758(+) GAGTG(A/T)GTCTT reference, missense
rs121908690 Pathogenic, A breast cancer sample 46,267,540(+) TCTCC(A/G)GAACT reference, missense
rs797044888 Pathogenic 46,267,600(+) ATTCC(G/T)GCATC reference, missense
rs374567435 Likely pathogenic 46,274,151(+) ACGTC(C/T)GCCTG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for RAD54L Gene

Variant ID Type Subtype PubMed ID
nsv829748 CNV loss 17160897
nsv470711 CNV gain 18288195
esv3585931 CNV gain 21293372
esv3585930 CNV gain 21293372
esv2761743 CNV gain 21179565

Variation tolerance for RAD54L Gene

Residual Variation Intolerance Score: 44.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.88; 48.52% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RAD54L Gene

Human Gene Mutation Database (HGMD)
RAD54L
SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAD54L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RAD54L Gene

Disorders for RAD54L Gene

MalaCards: The human disease database

(9) MalaCards diseases for RAD54L Gene - From: HGMD, OMIM, ClinVar, Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
lymphoma, non-hodgkin
  • lymphoma, non-hodgkin, somatic
colon adenocarcinoma
  • adenocarcinoma of colon
breast ductal carcinoma
  • duct carcinoma, nos
appendix adenocarcinoma
  • adenocarcinoma of appendix
breast cancer
  • breast cancer, invasive ductal
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for RAD54L

Genetic Association Database (GAD)
RAD54L
Human Genome Epidemiology (HuGE) Navigator
RAD54L
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAD54L
genes like me logo Genes that share disorders with RAD54L: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RAD54L Gene

Publications for RAD54L Gene

  1. Homologous DNA pairing by human recombination factors Rad51 and Rad54. (PMID: 12205100) Sigurdsson S … Sung P (The Journal of biological chemistry 2002) 3 4 22 60
  2. The architecture of the human Rad54-DNA complex provides evidence for protein translocation along DNA. (PMID: 11459989) Ristic D … Kanaar R (Proceedings of the National Academy of Sciences of the United States of America 2001) 3 4 22 60
  3. Characterization of the human homologue of RAD54: a gene located on chromosome 1p32 at a region of high loss of heterozygosity in breast tumors. (PMID: 9192813) Rasio D … Croce CM (Cancer research 1997) 3 4 22 60
  4. Human and mouse homologs of the Saccharomyces cerevisiae RAD54 DNA repair gene: evidence for functional conservation. (PMID: 8805304) Kanaar R … Hoeijmakers JH (Current biology : CB 1996) 2 3 4 60
  5. Comprehensive screen of genetic variation in DNA repair pathway genes and postmenopausal breast cancer risk. (PMID: 20496165) Monsees GM … Han J (Breast cancer research and treatment 2011) 3 45 60

Products for RAD54L Gene

Sources for RAD54L Gene

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