Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RAD51-AS1 Gene

Subcategory (RNA class) for RAD51-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAD51-AS1 Gene

  • RAD51 Antisense RNA 1 (Head To Head) 2 3 5
  • Transcribed In The Opposite Direction Of RAD51 2 3
  • TODRA 3

External Ids for RAD51-AS1 Gene

Previous GeneCards Identifiers for RAD51-AS1 Gene

  • GC15M040978

Summaries for RAD51-AS1 Gene

GeneCards Summary for RAD51-AS1 Gene

RAD51-AS1 (RAD51 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RAD51-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAD51-AS1 Gene

Genomics for RAD51-AS1 Gene

GeneHancer (GH) Regulatory Elements for RAD51-AS1 Gene

Promoters and enhancers for RAD51-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I040693 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 561.2 +0.0 20 3.1 PKNOX1 SMAD1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 SLC30A9 RAD51 RAD51-AS1 CCDC32 ENSG00000259211 INO80 DNAJC17 KNSTRN CHST14 BMF EIF2AK4
GH15I040090 Promoter/Enhancer 3.3 VISTA EPDnew FANTOM5 Ensembl ENCODE dbSUPER 47.6 +594.7 594749 18.8 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 BMF ENSG00000259211 DNAJC17 RAD51-AS1 BAHD1 CHST14 EIF2AK4 SRP14-AS1 ENSG00000259536 PLCB2
GH15I040762 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 29.5 -69.5 -69542 4.3 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 E2F8 GCHFR MGA DNAJC17 ENSG00000259211 INO80 ZFYVE19 RAD51-AS1 CCDC32 BMF FAM92A1P1
GH15I041492 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 21.6 -799.7 -799713 5.1 FOXA2 ZFP64 ARID4B DMAP1 ZNF2 YY1 SLC30A9 POLR2B ZNF766 ZNF213 ITPKA NDUFAF1 MGA RPAP1 RTF1 RAD51-AS1 INO80 ENSG00000260814 DNAJC17 LOC105370795
GH15I041620 Promoter/Enhancer 1.5 Ensembl ENCODE 24.3 -926.5 -926476 2.3 MLX ARID4B DMAP1 YY1 ZNF143 KLF13 DEK SP3 SP5 NFYC MGA GC15P041622 LOC105370791 RAD51-AS1 ENSG00000260814 TMEM87A VPS39 GANC INO80 PLA2G4B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RAD51-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RAD51-AS1 Gene

Genomic Locations for RAD51-AS1 Gene
chr15:40,686,724-40,695,107
(GRCh38/hg38)
Size:
8,384 bases
Orientation:
Minus strand
chr15:40,978,922-40,987,305
(GRCh37/hg19)

Genomic View for RAD51-AS1 Gene

Genes around RAD51-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAD51-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAD51-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAD51-AS1 Gene

Proteins for RAD51-AS1 Gene

Post-translational modifications for RAD51-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAD51-AS1 Gene

Domains & Families for RAD51-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAD51-AS1 Gene

Function for RAD51-AS1 Gene

Phenotypes From GWAS Catalog for RAD51-AS1 Gene

Phenotypes for RAD51-AS1 Gene

GenomeRNAi human phenotypes for RAD51-AS1:
genes like me logo Genes that share phenotypes with RAD51-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAD51-AS1 Gene

Localization for RAD51-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAD51-AS1 Gene

Pathways & Interactions for RAD51-AS1 Gene

SuperPathways for RAD51-AS1 Gene

No Data Available

Interacting Proteins for RAD51-AS1 Gene

Gene Ontology (GO) - Biological Process for RAD51-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAD51-AS1 Gene

Drugs & Compounds for RAD51-AS1 Gene

No Compound Related Data Available

Transcripts for RAD51-AS1 Gene

mRNA/cDNA for RAD51-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAD51-AS1 Gene

No ASD Table

Relevant External Links for RAD51-AS1 Gene

GeneLoc Exon Structure for
RAD51-AS1
ECgene alternative splicing isoforms for
RAD51-AS1

Expression for RAD51-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAD51-AS1 Gene

genes like me logo Genes that share expression patterns with RAD51-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAD51-AS1 Gene

Orthologs for RAD51-AS1 Gene

Evolution for RAD51-AS1 Gene

ENSEMBL:
Gene Tree for RAD51-AS1 (if available)
TreeFam:
Gene Tree for RAD51-AS1 (if available)

No data available for Orthologs for RAD51-AS1 Gene

Paralogs for RAD51-AS1 Gene

No data available for Paralogs for RAD51-AS1 Gene

Variants for RAD51-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAD51-AS1 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1801320 risk-factor, Breast cancer, susceptibility to, in BRCA1 and BRCA2 carriers 40,695,330(-) G/C upstream_transcript_variant
rs1000081593 -- 40,695,216(-) C/T upstream_transcript_variant
rs1001476150 -- 40,693,679(-) C/T downstream_transcript_variant
rs1002049583 -- 40,694,882(-) G/A intron_variant
rs1003461648 -- 40,695,759(-) A/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RAD51-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2760026 CNV loss 17122850
nsv529030 CNV loss 19592680
nsv832984 CNV loss 17160897

Additional Variant Information for RAD51-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAD51-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAD51-AS1 Gene

Disorders for RAD51-AS1 Gene

Additional Disease Information for RAD51-AS1

No disorders were found for RAD51-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAD51-AS1 Gene

Publications for RAD51-AS1 Gene

  1. TODRA, a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51, and Enhances RAD51-Dependent DSB (Double Strand Break) Repair. (PMID: 26230935) Gazy I … Levy-Lahad E (PloS one 2015) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for RAD51-AS1 Gene

Sources for RAD51-AS1 Gene

Content
Loading form....