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Aliases for RAD51-AS1 Gene

Subcategory (RNA class) for RAD51-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAD51-AS1 Gene

  • RAD51 Antisense RNA 1 (Head To Head) 2 3 5
  • Transcribed In The Opposite Direction Of RAD51 2 3
  • TODRA 3

External Ids for RAD51-AS1 Gene

Previous GeneCards Identifiers for RAD51-AS1 Gene

  • GC15M040978

Summaries for RAD51-AS1 Gene

GeneCards Summary for RAD51-AS1 Gene

RAD51-AS1 (RAD51 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAD51-AS1 Gene

Genomics for RAD51-AS1 Gene

Regulatory Elements for RAD51-AS1 Gene

Enhancers for RAD51-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F040955 1 Ensembl ENCODE 48.3 -262.2 -262162 3.4 ZNF493 ZFP64 ZEB1 ZNF121 ZNF354C ZNF202 ZNF680 ZNF362 SP3 ZNF654 ENSG00000259211 RAD51-AS1 DNAJC17 ENSG00000260814 BAHD1 RPAP1 NDUFAF1 CHST14 SRP14 CHAC1
GH15F040959 0.7 Ensembl ENCODE 46.2 -265.5 -265496 1.8 TBP ZFP64 MAX ZNF140 ZNF266 ZNF514 ZIC2 ZNF101 ZNF664 ZFHX2 ENSG00000259211 RAD51-AS1 BAHD1 ENSG00000260814 DNAJC17 RPAP1 OIP5-AS1 SRP14 NDUFAF1 EHD4-AS1
GH15F041620 0.5 ENCODE 32.2 -926.5 -926476 2.3 MLX ARID4B DMAP1 ZNF48 BRCA1 YY1 GLIS2 ZNF143 DEK SP3 RAD51-AS1 ENSG00000260814 MAPKBP1 PLA2G4B GC15P041622 MGA
GH15F041492 1.1 FANTOM5 ENCODE 20.9 -799.7 -799713 5.1 ZFP64 ARID4B DMAP1 ZNF2 YY1 SLC30A9 KLF13 ZNF263 SP3 SP5 NDUFAF1 RTF1 RAD51-AS1 RPAP1 ENSG00000260814 MAPKBP1 TYRO3 RNU6-1169P RPUSD2 ITPKA
GH15F040090 1.6 VISTA FANTOM5 ENCODE 16.2 +594.7 594749 18.8 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ENSG00000259211 DNAJC17 BMF CHST14 RPLP0P10 BAHD1 SRP14 EIF2AK4 SRP14-AS1 ENSG00000259432
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RAD51-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RAD51-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001451632 -193 2201 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143
ENSR00001794233 -1693 400 ADNP

Genomic Location for RAD51-AS1 Gene

Chromosome:
15
Start:
40,686,724 bp from pter
End:
40,695,107 bp from pter
Size:
8,384 bases
Orientation:
Minus strand

Genomic View for RAD51-AS1 Gene

Genes around RAD51-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAD51-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAD51-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAD51-AS1 Gene

Proteins for RAD51-AS1 Gene

Post-translational modifications for RAD51-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAD51-AS1 Gene

Domains & Families for RAD51-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAD51-AS1 Gene

Function for RAD51-AS1 Gene

Phenotypes for RAD51-AS1 Gene

GenomeRNAi human phenotypes for RAD51-AS1:
genes like me logo Genes that share phenotypes with RAD51-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAD51-AS1 Gene

Localization for RAD51-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAD51-AS1 Gene

Pathways & Interactions for RAD51-AS1 Gene

SuperPathways for RAD51-AS1 Gene

No Data Available

Interacting Proteins for RAD51-AS1 Gene

Gene Ontology (GO) - Biological Process for RAD51-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAD51-AS1 Gene

Transcripts for RAD51-AS1 Gene

mRNA/cDNA for RAD51-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAD51-AS1 Gene

No ASD Table

Relevant External Links for RAD51-AS1 Gene

GeneLoc Exon Structure for
RAD51-AS1
ECgene alternative splicing isoforms for
RAD51-AS1

Expression for RAD51-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RAD51-AS1 Gene

genes like me logo Genes that share expression patterns with RAD51-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RAD51-AS1 Gene

Orthologs for RAD51-AS1 Gene

Evolution for RAD51-AS1 Gene

ENSEMBL:
Gene Tree for RAD51-AS1 (if available)
TreeFam:
Gene Tree for RAD51-AS1 (if available)

No data available for Orthologs for RAD51-AS1 Gene

Paralogs for RAD51-AS1 Gene

No data available for Paralogs for RAD51-AS1 Gene

Variants for RAD51-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAD51-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs112131218 -- 40,696,177(+) CTGGC(C/T)CCTGT intron-variant, upstream-variant-2KB
rs11315096 -- 40,693,737(+) GCTTA(-/T)TTTTT nc-transcript-variant, upstream-variant-2KB
rs113231676 -- 40,695,674(+) GGTTC(C/G)AGCGA intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs114134304 -- 40,694,744(+) GCCGG(A/G)AGATG nc-transcript-variant, upstream-variant-2KB
rs114475237 -- 40,696,509(+) AGCTG(C/T)AGTGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RAD51-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2760026 CNV loss 17122850
nsv529030 CNV loss 19592680
nsv832984 CNV loss 17160897

Relevant External Links for RAD51-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAD51-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAD51-AS1 Gene

Disorders for RAD51-AS1 Gene

Relevant External Links for RAD51-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAD51-AS1

No disorders were found for RAD51-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAD51-AS1 Gene

Publications for RAD51-AS1 Gene

  1. TODRA, a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51, and Enhances RAD51-Dependent DSB (Double Strand Break) Repair. (PMID: 26230935) Gazy I. … Levy-Lahad E. (PLoS ONE 2015) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for RAD51-AS1 Gene

Sources for RAD51-AS1 Gene

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