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Aliases for RAD51-AS1 Gene

Subcategory (RNA class) for RAD51-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAD51-AS1 Gene

  • RAD51 Antisense RNA 1 (Head To Head) 2 3 5
  • Transcribed In The Opposite Direction Of RAD51 2 3
  • TODRA 3

External Ids for RAD51-AS1 Gene

Previous GeneCards Identifiers for RAD51-AS1 Gene

  • GC15M040978

Summaries for RAD51-AS1 Gene

GeneCards Summary for RAD51-AS1 Gene

RAD51-AS1 (RAD51 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RAD51-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAD51-AS1 Gene

Genomics for RAD51-AS1 Gene

Regulatory Elements for RAD51-AS1 Gene

Enhancers for RAD51-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H040090 2.7 VISTA FANTOM5 Ensembl ENCODE dbSUPER 47.6 +594.7 594749 18 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC ENSG00000259211 DNAJC17 BAHD1 RAD51-AS1 BMF CHST14 EIF2AK4 SRP14-AS1 RPLP0P10 ENSG00000259536
GH15H041492 1.7 FANTOM5 ENCODE dbSUPER 21.6 -799.7 -799713 5 FOXA2 ZFP64 SIN3A ARID4B DMAP1 ZNF2 YY1 SLC30A9 ZNF766 SP3 NDUFAF1 MGA RPAP1 RTF1 RAD51-AS1 INO80 ENSG00000260814 DNAJC17 LOC105370795 GANC
GH15H041659 1.5 FANTOM5 ENCODE 20.5 -965.9 -965914 3 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 SLC30A9 MGA JMJD7 INO80 RAD51-AS1 DNAJC17 MAPKBP1 LOC105370795 GANC ENSG00000260814 PLA2G4B
GH15H040366 1.3 Ensembl ENCODE 23 +327.3 327258 2 ZFP64 ARID4B SIN3A DMAP1 SLC30A9 ZNF143 MXD4 NFYC ZC3H11A REST KNSTRN DISP2 IVD RAD51-AS1 ENSG00000259211 INO80 CCDC32 EIF2AK4 ENSG00000259368
GH15H041240 0.9 ENCODE 31.1 -546.7 -546676 1 NFIB ARID4B FEZF1 ZSCAN5C ZNF350 RCOR1 CREM ZNF491 NFIC PRDM6 MGA RAD51-AS1 ENSG00000259211 ENSG00000260814 INO80 FAM92A1P1 VPS39 MAPKBP1 CCDC32 CHAC1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RAD51-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RAD51-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000075546 -93 2001 PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 DEK

Genomic Location for RAD51-AS1 Gene

Chromosome:
15
Start:
40,686,724 bp from pter
End:
40,695,107 bp from pter
Size:
8,384 bases
Orientation:
Minus strand

Genomic View for RAD51-AS1 Gene

Genes around RAD51-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAD51-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAD51-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAD51-AS1 Gene

Proteins for RAD51-AS1 Gene

Post-translational modifications for RAD51-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAD51-AS1 Gene

Domains & Families for RAD51-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAD51-AS1 Gene

Function for RAD51-AS1 Gene

Phenotypes From GWAS Catalog for RAD51-AS1 Gene

Phenotypes for RAD51-AS1 Gene

GenomeRNAi human phenotypes for RAD51-AS1:
genes like me logo Genes that share phenotypes with RAD51-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAD51-AS1 Gene

Localization for RAD51-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAD51-AS1 Gene

Pathways & Interactions for RAD51-AS1 Gene

SuperPathways for RAD51-AS1 Gene

No Data Available

Interacting Proteins for RAD51-AS1 Gene

Gene Ontology (GO) - Biological Process for RAD51-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAD51-AS1 Gene

Drugs & Compounds for RAD51-AS1 Gene

No Compound Related Data Available

Transcripts for RAD51-AS1 Gene

mRNA/cDNA for RAD51-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAD51-AS1 Gene

No ASD Table

Relevant External Links for RAD51-AS1 Gene

GeneLoc Exon Structure for
RAD51-AS1
ECgene alternative splicing isoforms for
RAD51-AS1

Expression for RAD51-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAD51-AS1 Gene

genes like me logo Genes that share expression patterns with RAD51-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAD51-AS1 Gene

Orthologs for RAD51-AS1 Gene

Evolution for RAD51-AS1 Gene

ENSEMBL:
Gene Tree for RAD51-AS1 (if available)
TreeFam:
Gene Tree for RAD51-AS1 (if available)

No data available for Orthologs for RAD51-AS1 Gene

Paralogs for RAD51-AS1 Gene

No data available for Paralogs for RAD51-AS1 Gene

Variants for RAD51-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAD51-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1801320 other 40,695,330(+) AGCCA(C/G)GGGCG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000081593 -- 40,695,216(+) AGAGA(C/T)CGAGC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001476150 -- 40,693,679(+) GTCCT(C/T)CCACC downstream-variant-500B, upstream-variant-2KB
rs1002049583 -- 40,694,882(+) GGTAG(A/G)AGTAG intron-variant, upstream-variant-2KB
rs1003461648 -- 40,695,759(+) TTTCC(A/T)TTACA intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for RAD51-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2760026 CNV loss 17122850
nsv529030 CNV loss 19592680
nsv832984 CNV loss 17160897

Relevant External Links for RAD51-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAD51-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAD51-AS1 Gene

Disorders for RAD51-AS1 Gene

Relevant External Links for RAD51-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAD51-AS1

No disorders were found for RAD51-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAD51-AS1 Gene

Publications for RAD51-AS1 Gene

  1. TODRA, a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51, and Enhances RAD51-Dependent DSB (Double Strand Break) Repair. (PMID: 26230935) Gazy I … Levy-Lahad E (PloS one 2015) 2 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for RAD51-AS1 Gene

Sources for RAD51-AS1 Gene

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