RAD51 Gene
protein-coding GIFtS : 72
GC15P038774
RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) (Previous name: RAD51 (S. cerevisiae) homolog (E coli RecA homolog) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: RAD51A, RECA )
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Aliases & Descriptions for RAD51
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases BRCC5 1 , 2 HRAD51 2 HsRAD51 3 HsRad51 1 , 2 HsT16930 1 , 2 RAD51A 2 , 3 RAD51D 5 RAD51L3 5 RECA 2 , 3 hRAD51 3
Descriptions BRCA1/BRCA2-containing complex, subunit 5 2 DNA repair protein RAD51 homolog 1 2 RAD51 (S. cerevisiae) homolog (E coli RecA homolog) 1 RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) 2 RAD51 homolog protein 2 RecA, E. coli, homolog of 2 RecA-like protein 2 recombination protein A 2
Search outside databases for aliases for RAD51 genePrevious GC identifers: GC15P036354 GC15P033883 GC15P038566 GC15P038703
Summaries for RAD51 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for RAD51 : The protein encoded by this gene is a member of the RAD51 protein family. RAD51 family members arehighly similar to bacterial RecA and Saccharomyces cerevisiae Rad51, and are known to be involvedin the homologous recombination and repair of DNA. This protein can interact with thessDNA-binding protein RPA and RAD52, and it is thought to play roles in homologous pairing andstrand transfer of DNA. This protein is also found to interact with BRCA1 and BRCA2, which may beimportant for the cellular response to DNA damage. BRCA2 is shown to regulate both theintracellular localization and DNA-binding ability of this protein. Loss of these controlsfollowing BRCA2 inactivation may be a key event leading to genomic instability and tumorigenesis.Two alternatively spliced transcript variants of this gene, which encode distinct proteins, havebeen reported. Transcript variants utilizing alternative polyA signals exist. [provided by RefSeq] UniProtKB/Swiss-Prot: RAD51_HUMAN, Q06609 Function : May participate in a common DNA damage response pathway associated with the activation ofhomologous recombination and double-strand break repair. Binds to single and double stranded DNAand exhibits DNA-dependent ATPase activity. Underwinds duplex DNA and forms helical nucleoproteinfilaments
Gene Wiki entry for RAD51
Genomic Location for RAD51
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the RAD51 gene Entrez Gene cytogenetic band: 15q15.1 Ensembl cytogenetic band: 15q15.1 HGNC cytogenetic band: 15q15.1 RAD51 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 15 GeneLoc Exon Structure
GeneLoc location for GC15P038774:
(about GC identifiers )
Start:
38,774,651 bp from pter
End:
38,811,648 bp from pter
Size:
36,998 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000015.8 NT_010194.16 Proteins for RAD51
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: RAD51_HUMAN, Q06609 (See
protein sequence )Recommended Name: DNA repair protein RAD51 homolog 1 Size : 339 amino acids; 36966 Da
Subunit : Interacts with BRCA1, BRCA2 and either directly or indirectly with p53. Interacts withXRCC3, RAD54L and RAD54B. Part of a complex with RAD51C and RAD51B. Interacts with RAD51AP1 andRAD51AP2. Interacts with CHEK1/CHK1, and this may require prior phosphorylation of CHEK1.Interacts with the MND1-PSMC3IP heterodimer (By similarity). Interacts with OBFC2B
Subcellular location : Nucleus. Note=Colocalizes with RAD51AP1 to multiple nuclear foci uponinduction of DNA damage
PDB structure from and Proteopedia : 1B22 (3D)
 1N0W (3D)
 
Secondary accessions : Q6FHX9 Q9BV60Alternative splicing : 2 isoforms : Q06609-1 Q06609-2
Post-translational modifications:
Phosphorylated. Phosphorylation of Thr-309 by CHEK1/CHK1 may enhance association with chromatin atsites of DNA damage and promote DNA repair by homologous recombination1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_002866.2 NP_597994.2 ENSEMBL proteins: ENSP00000372088 ENSP00000267868 ENSP00000372087 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: RAD51 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for RAD51: Assays for RAD51:
Protein
Domains/ Families for RAD51(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q06609 ProtoNet protein and cluster: Q06609
2 Blocks protein families : IPB003583 Helix-hairpin-helix DNA-binding IPB013632 Rad51 UniProtKB/Swiss-Prot: RAD51_HUMAN, Q06609 Similarity : Belongs to the recA family. RAD51 subfamilySimilarity : Contains 1 HhH domain
Gene Function for RAD51
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (RAD51 ) Millipore RNAi Products for the Analysis of RAD51 Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (RAD51 )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002875 Applied Biosystems Silencer ® siRNAs for RAD51 Sigma-Aldrich siRNA and siRNA Panels for RAD51 Sigma-Aldrich shRNA Panels and shRNA for RAD51 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002875                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002875                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002875  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002875 UniProtKB/Swiss-Prot: RAD51_HUMAN, Q06609 Function : May participate in a common DNA damage response pathway associated with the activation ofhomologous recombination and double-strand break repair. Binds to single and double stranded DNAand exhibits DNA-dependent ATPase activity. Underwinds duplex DNA and forms helical nucleoproteinfilaments
Genatlas biochemistry entry for RAD51 :yeast (S cerevisiae) RAD51 homolog A,colocalizing with RPA heterotrimeric ssDNA bindingprotein,complexing with phosphorylated BRCA1,BRCA2 and RAD52 for DNA repair of double strandbreaks through homologous recombination,also involved in immunoglobulin switch recombination,notmutated ,deleted in breast cancer with poor prognosis,uncommonly associated with parathyroidtumorigenesis
4 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Rad51) :5/11 Gene Ontology (GO) molecular function terms (links to tree view) (see all 11
):
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Pathways & Interactions for RAD51
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for RAD51 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for RAD51 5/109 Interacting proteins for RAD51 (ENSP00000372088 3 Q06609 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 109
)About this table 5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9
):
About this table
Drugs & Compounds for RAD51 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for RAD51 10/33 Novoseek chemical compound relationships for RAD51 gene (see all 33
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
atpgammas
82.97
47
9201926 (3), 9718317 (3), 1507222 (2), 2082728 (2) (see all 29 )
5-formyl-2'-deoxyuridine
75.44
6
12836321 (2), 11562961 (1), 12903258 (1), 14611842 (1)
atp
67.28
204
11342134 (6), 9012806 (4), 9201926 (4), 15719060 (4) (see all 84 )
adp
49.48
43
12758082 (4), 11839740 (3), 15123651 (3), 16624636 (2) (see all 21 )
inosine triphosphate
48.26
8
1606138 (3), 1606139 (2)
rpa 2
45.95
1
15326288 (1)
oligonucleotide
42.82
21
9268650 (2), 1962209 (1), 9838005 (1), 9880493 (1) (see all 17 )
sugar phosphate
31.34
2
16358736 (1), 17317338 (1)
amp-pnp
23.99
1
9718317 (1)
polynucleotide
22.39
3
1507222 (1), 8420955 (1)
About this table
Transcripts for RAD51(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (RAD51 ) Millipore RNAi Products for the Analysis of RAD51 Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (RAD51 )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002875 Sigma-Aldrich siRNA and siRNA Panels for RAD51 Sigma-Aldrich shRNA Panels and shRNA for RAD51 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002875 NM_133487
REFSEQ mRNAs for RAD51 gene (2 alternative transcripts): NM_002875.3 NM_133487.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002875 NM_133487
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002875                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002875                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002875  
Additional cDNA sequence: AK131299.1 AK291969.1 AK303089.1 AK313503.1 AY425955.1 AY608888.1 BC001459.2 BT019705.1 CR536559.1 CR594665.1 CR606487.1 CR619182.1 CR622784.1 CR626167.1 D13804.1 D14134.1 EU362635.1
10 DOTS entries : DT.209091 DT.95254199 DT.121050424 DT.95254169 DT.92452043 DT.95085123 DT.91749880 DT.100777886 DT.121050426 DT.95254167
24/118 AceView cDNA sequences (see all 118
):BU164989 BM810067 CR622784 CR626167 BM808716 BQ424388 BX494877 AU107551 AY608888 BU624430 BM791694 BG474115 AW363521 CR606487 CR536559 CR619182 AI347079 BC001459 CR594665 BE280848 AU100170 BM910438 BI826961 BE256767
highest scoring ESTs for RAD51 :D14134 AA568782 AA873056 AI347079 AK131299 AL526587 AL526641 AL563755 AW006523 AW103435
Unigene Cluster for RAD51: RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) Hs.631709 [show with all ESTs ] Unigene Representative Sequence: NM_002875 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for RAD51 ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b SP1 :       -   -           -                   SP2 :         -       -   -                     SP3 :         -       -   -   -                   SP4 :         -                             SP5 :                                    
About this scheme ECgene alternative splicing isoforms for RAD51 3 Ensembl transcripts including schematic representations : ENST00000382643
ENST00000267868
ENST00000382642
Expression for RAD51
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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RAD51 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for RAD51 1 / 2 / 3
5 probe-sets matching RAD51 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTGCCTTAGGSOURCE GeneReport for Unigene cluster: Hs.631709 Expression variation in blood from EXPOLDB for RAD51
UniProtKB/Swiss-Prot: RAD51_HUMAN, Q06609 Tissue specificity : Highly expressed in testis and thymus, followed by small intestine, placenta,colon, pancreas and ovary. Weakly expressed in breast
Orthologs for RAD51
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for RAD51 gene from 5/23 species (see all 23
)
About this table Species with no ortholog for RAD51 ENSEMBL Gene Tree for RAD51 Paralogs for RAD51 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for RAD51 gene DMC1 2 XRCC3 2
SNPs/Variants for RAD51 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for RAD51 (up to first 250kb)
Disorders & Mutations for RAD51
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 602954 UniProtKB/Swiss-Prot: RAD51_HUMAN, Q06609
Defects in RAD51 are associated with breast cancer (BC) [MIM:114480]
10/26 Novoseek disease relationships for RAD51 gene (see all 26
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
bloom syndrome
63.95
3
12975363 (1), 10767546 (1), 15143192 (1)
fanconis anemia
61.81
7
12239151 (1), 12483114 (1)
ataxia telangiectasia
50.43
2
15135073 (1), 9315668 (1)
breast cancer
49.52
88
16762046 (7), 18974064 (6), 12673366 (5), 17707537 (3) (see all 38 )
germ-line mutation
45.60
1
10463575 (1)
ovarian cancer
34.62
10
11535547 (3), 16005565 (2), 10197592 (1), 16165098 (1) (see all 5 )
cancer
32.45
30
19106292 (4), 15150571 (2), 18618591 (2), 9765620 (1) (see all 19 )
bilateral breast cancer
28.37
2
17666788 (1), 10807537 (1)
chromosomal aberrations
24.49
2
11283264 (1), 16511829 (1)
tumors
20.44
55
16596227 (5), 11782381 (5), 16234517 (4), 18243065 (3) (see all 27 )
About this table Human Gene Mutation Database : RAD51 Genetic Association Database: RAD51 Human Genome Epidemiology Navigator: RAD51 (62 documents)
Medical News for RAD51 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for RAD51 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/588 PubMed articles for RAD51 gene (see all 588
): A single nucleotide polymorphism in the 5' untranslated region of RAD51 and risk of cancer among BRCA1/2 mutation carriers. (PubMed id 11535547) 1, 3, 4, 6 Wang W.W.... Struewing J.P. (2001) Cloning and sequence of the human RecA-like gene cDNA. (PubMed id 8479919) 2, 3, 4 Yoshimura Y....Matsushiro A. (1993) Cloning of human, mouse and fission yeast recombination genes homologous to RAD51 and recA. (PubMed id 8358431) 2, 3, 4 Shinohara A.... Ogawa T. (1993) A novel human rad54 homologue, Rad54B, associates with Rad51. (PubMed id 10851248) 1, 3, 4 Tanaka K....Miyagawa K. (2000) Purification and characterization of the human Rad51 protein, an analogue of E. coli RecA. (PubMed id 7988572) 1, 3, 4 Benson F.E.... West S.C. (1994) RAB22 and RAB163/mouse BRCA2: proteins that specifically interact with the RAD51 protein. (PubMed id 9192668) 1, 3, 4 Mizuta R.... Alt F.W. (1997) The N-terminal domain of the human Rad51 protein binds DNA: structure and a DNA binding surface as revealed by NMR. (PubMed id 10390347) 1, 3, 4 Aihara H.... Shibata T. (1999) Polymorphisms of the BRCA2 and RAD51 genes in breast cancer. (PubMed id 16261408) 1, 3, 6 Sliwinski T....Blasiak J. (2005) Polymorphisms of DNA repair genes and risk of glioma. (PubMed id 15313891) 1, 3, 6 Wang L.E....Wei Q. (2004) Polymorphisms in genes involved in homologous recombination repair interact to increase the risk of developing acute myeloid leukemia. (PubMed id 15102670) 1, 3, 6 Seedhouse C....Russell N. (2004)
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Genome Databases showing RAD51
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing RAD51
(According to HUGE )
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Specialized Databases showing RAD51 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for RAD51 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for RAD51:
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009