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RAD23B Gene

protein-coding   GIFtS: 69
GCID: GC09P110045

RAD23 Homolog B (S. Cerevisiae)

(Previous name: RAD23 (S. cerevisiae) homolog B)
  See RAD23B-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
RAD23 Homolog B (S. Cerevisiae)1 2     HHR23B2
XP-C Repair Complementing Complex 58 KDa1 2     P582
XP-C Repair Complementing Protein1 2     RAD23, Yeast Homolog Of, B2
HR23B2 3     UV Excision Repair Protein RAD23 Homolog B2
XP-C Repair-Complementing Complex 58 KDa Protein2 3     hHR23B3
RAD23 (S. Cerevisiae) Homolog B1     p583

External Ids:    HGNC: 98131   Entrez Gene: 58872   Ensembl: ENSG000001193187   OMIM: 6000625   UniProtKB: P547273   

Export aliases for RAD23B gene to outside databases

Previous GC identifers: GC09P100840 GC09P101777 GC09P103503 GC09P105425 GC09P107125 GC09P109085 GC09P079647


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for RAD23B Gene:
The protein encoded by this gene is one of two human homologs of Saccharomyces cerevisiae Rad23, a protein
involved in the nucleotide excision repair (NER). This protein was found to be a component of the protein complex
that specifically complements the NER defect of xeroderma pigmentosum group C (XP-c) cell extracts in vitro. This
protein was also shown to interact with, and elevate the nucleotide excision activity of 3-methyladenine-DNA
glycosylase (MPG), which suggested a role in DNA damage recognition in base excision repair. This protein
contains an N-terminal ubiquitin-like domain, which was reported to interact with 26S proteasome, and thus this
protein may be involved in the ubiquitin mediated proteolytic pathway in cells. Alternative splicing results in
multiple transcript variants encoding distinct isoforms. (provided by RefSeq, Sep 2011)

GeneCards Summary for RAD23B Gene:
RAD23B (RAD23 homolog B (S. cerevisiae)) is a protein-coding gene. Diseases associated with RAD23B include xeroderma pigmentosum, group c, and mutagen sensitivity. GO annotations related to this gene include single-stranded DNA binding and polyubiquitin binding. An important paralog of this gene is RAD23A.

UniProtKB/Swiss-Prot: RD23B_HUMAN, P54727
Function: Multiubiquitin chain receptor involved in modulation of proteasomal degradation. Binds to polyubiquitin
chains. Proposed to be capable to bind simultaneously to the 26S proteasome and to polyubiquitinated substrates
and to deliver ubiquitinated proteins to the proteasome. May play a role in endoplasmic reticulum-associated
degradation (ERAD) of misfolded glycoproteins by association with PNGase and delivering deglycosylated proteins
to the proteasome
Function: Involved in global genome nucleotide excision repair (GG-NER) by acting as component of the XPC complex.
Cooperatively with CETN2 appears to stabilize XPC. May protect XPC from proteasomal degradation
Function: The XPC complex is proposed to represent the first factor bound at the sites of DNA damage and together
with other core recognition factors, XPA, RPA and the TFIIH complex, is part of the pre-incision (or initial
recognition) complex. The XPC complex recognizes a wide spectrum of damaged DNA characterized by distortions of
the DNA helix such as single-stranded loops, mismatched bubbles or single-stranded overhangs. The orientation of
XPC complex binding appears to be crucial for inducing a productive NER. XPC complex is proposed to recognize and
to interact with unpaired bases on the undamaged DNA strand which is followed by recruitment of the TFIIH complex
and subsequent scanning for lesions in the opposite strand in a 5'-to-3' direction by the NER machinery.
Cyclobutane pyrimidine dimers (CPDs) which are formed upon UV-induced DNA damage esacpe detection by the XPC
complex due to a low degree of structural perurbation. Instead they are detected by the UV-DDB complex which in
turn recruits and cooperates with the XPC complex in the respective DNA repair. In vitro, the XPC:RAD23B dimer is
sufficient to initiate NER; it preferentially binds to cisplatin and UV-damaged double-stranded DNA and also
binds to a variety of chemically and structurally diverse DNA adducts. XPC:RAD23B contacts DNA both 5' and 3' of
a cisplatin lesion with a preference for the 5' side. XPC:RAD23B induces a bend in DNA upon binding. XPC:RAD23B
stimulates the activity of DNA glycosylases TDG and SMUG1

Gene Wiki entry for RAD23B Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000009.11  NC_018920.2  NT_008470.20  
Regulatory elements:
   Regulatory transcription factor binding sites in the RAD23B gene promoter:
         Bach1   AML1a   p53   CBF-C   Pax-3   CBF-B   HOXA5   c-Myb   CP1C   CP1A   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 3): RAD23B promoter sequence
   Search Chromatin IP Primers for RAD23B

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RAD23B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q31.2   Ensembl cytogenetic band:  9q31.2   HGNC cytogenetic band: 9q31.2

RAD23B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RAD23B gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09P110045:  view genomic region     (about GC identifiers)

Start:
110,045,418 bp from pter      End:
110,094,475 bp from pter
Size:
49,058 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: RD23B_HUMAN, P54727 (See protein sequence)
Recommended Name: UV excision repair protein RAD23 homolog B  
Size: 409 amino acids; 43171 Da
Subunit: Component of the XPC complex composed of XPC, RAD23B and CETN2. Interacts with NGLY1 and PSMC1. Interacts
with ATXN3. Interacts with PSMD4 and PSMC5. Interacts with AMFR. Interacts with VCP; the interaction is indirect
and mediated by NGLY1 (By similarity)
3 PDB 3D structures from and Proteopedia for RAD23B:
1P1A (3D)        1PVE (3D)        1UEL (3D)    
Secondary accessions: B3KWK8 G5E9P0 Q7Z5K8 Q8WUB0
Alternative splicing: 2 isoforms:  P54727-1   P54727-2   (Highly expressed in the testis and in ejaculated spermatozoa)

Explore the universe of human proteins at neXtProt for RAD23B: NX_P54727

Explore proteomics data for RAD23B at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys14, Lys24, Lys45, Lys51, Lys60, Lys67, Lys76, Lys147, Lys151
  • Modification sites at PhosphoSitePlus

  • See RAD23B Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (3 alternative transcripts): 
    NP_001231642.1  NP_001231653.1  NP_002865.1  

    ENSEMBL proteins: 
     ENSP00000416868   ENSP00000350708   ENSP00000415821   ENSP00000396975   ENSP00000405623  
    Reactome Protein details: P54727

    RAD23B Human Recombinant Protein Products:

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    Novus Biologicals RAD23B Proteins
    Novus Biologicals RAD23B Lysates
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    Browse Sino Biological Cell Lysates
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for RAD23B

     
    Search eBioscience for Proteins for RAD23B 

     
    antibodies-online proteins for RAD23B (7 products) 

     
    antibodies-online peptides for RAD23B

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    LSBio Antibodies in human, mouse, rat for RAD23B
    antibodies-online antibodies for RAD23B (61 products) 

    RAD23B Assay Products:

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    antibodies-online kits for RAD23B (10 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    Selected InterPro protein domains (see all 7):
     IPR004806 Rad23
     IPR000626 Ubiquitin_dom
     IPR009060 UBA-like
     IPR006636 STI1_HS-bd
     IPR000449 UBA/Ts_N

    Graphical View of Domain Structure for InterPro Entry P54727

    ProtoNet protein and cluster: P54727

    3 Blocks protein domains:
    IPB000449 Ubiquitin-associated domain
    IPB000626 Ubiquitin domain
    IPB006636 Heat shock chaperonin-binding


    UniProtKB/Swiss-Prot: RD23B_HUMAN, P54727
    Domain: The ubiquitin-like domain mediates interaction with ATXN3
    Similarity: Belongs to the RAD23 family
    Similarity: Contains 1 STI1 domain
    Similarity: Contains 2 UBA domains
    Similarity: Contains 1 ubiquitin-like domain


    Find genes that share domains with RAD23B           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: RD23B_HUMAN, P54727
    Function: Multiubiquitin chain receptor involved in modulation of proteasomal degradation. Binds to polyubiquitin
    chains. Proposed to be capable to bind simultaneously to the 26S proteasome and to polyubiquitinated substrates
    and to deliver ubiquitinated proteins to the proteasome. May play a role in endoplasmic reticulum-associated
    degradation (ERAD) of misfolded glycoproteins by association with PNGase and delivering deglycosylated proteins
    to the proteasome
    Function: Involved in global genome nucleotide excision repair (GG-NER) by acting as component of the XPC complex.
    Cooperatively with CETN2 appears to stabilize XPC. May protect XPC from proteasomal degradation
    Function: The XPC complex is proposed to represent the first factor bound at the sites of DNA damage and together
    with other core recognition factors, XPA, RPA and the TFIIH complex, is part of the pre-incision (or initial
    recognition) complex. The XPC complex recognizes a wide spectrum of damaged DNA characterized by distortions of
    the DNA helix such as single-stranded loops, mismatched bubbles or single-stranded overhangs. The orientation of
    XPC complex binding appears to be crucial for inducing a productive NER. XPC complex is proposed to recognize and
    to interact with unpaired bases on the undamaged DNA strand which is followed by recruitment of the TFIIH complex
    and subsequent scanning for lesions in the opposite strand in a 5'-to-3' direction by the NER machinery.
    Cyclobutane pyrimidine dimers (CPDs) which are formed upon UV-induced DNA damage esacpe detection by the XPC
    complex due to a low degree of structural perurbation. Instead they are detected by the UV-DDB complex which in
    turn recruits and cooperates with the XPC complex in the respective DNA repair. In vitro, the XPC:RAD23B dimer is
    sufficient to initiate NER; it preferentially binds to cisplatin and UV-damaged double-stranded DNA and also
    binds to a variety of chemically and structurally diverse DNA adducts. XPC:RAD23B contacts DNA both 5' and 3' of
    a cisplatin lesion with a preference for the 5' side. XPC:RAD23B induces a bend in DNA upon binding. XPC:RAD23B
    stimulates the activity of DNA glycosylases TDG and SMUG1

         Genatlas biochemistry entry for RAD23B:
    yeast (S cerevisiae) RAD23 homolog B,ubiquitin conjugating enzyme E3B,58kDa,forming a tight complex with XPC

         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003684damaged DNA binding IEA--
    GO:0003697single-stranded DNA binding TAS8168482
    GO:0005515protein binding IPI10488153
    GO:0031593polyubiquitin binding IDA19435460
         
    Find genes that share ontologies with RAD23B           About GenesLikeMe


    Phenotypes:
         5 GenomeRNAi human phenotypes for RAD23B:
     Decreased viability with pacli  Increased HDAC inhibitor resis  Increased cell death HMECs cel  Synthetic lethal with Ras 
     Upregulation of Wnt/beta-caten 

         Selected MGI mutant phenotypes (inferred from 1 allele(MGI details for Rad23b) (see all 16):
     adipose tissue  behavior/neurological  cardiovascular system  cellular  craniofacial 
     digestive/alimentary  embryogenesis  endocrine/exocrine gland  growth/size/body  homeostasis/metabolism 
     immune system  integument  mortality/aging  normal  reproductive system 

    Find genes that share phenotypes with RAD23B           About GenesLikeMe

    Animal Models:
         MGI mouse knock-out Rad23btm1Gvh for RAD23B

       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for RAD23B
       inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for RAD23B

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for RAD23B
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for RAD23B

    miRNA
    Products:
        
    miRTarBase miRNAs that target RAD23B:
    hsa-mir-197-3p (MIRT048119), hsa-mir-106b-5p (MIRT044281), hsa-mir-373-3p (MIRT000056), hsa-mir-155-5p (MIRT021032), hsa-mir-106a-5p (MIRT048344), hsa-mir-92a-3p (MIRT048988), hsa-mir-1301-3p (MIRT035963), hsa-mir-30a-5p (MIRT005172)

    Block miRNA regulation of human, mouse, rat RAD23B using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate RAD23B (see all 140):
    hsa-miR-361-5p hsa-miR-106a hsa-miR-3074-3p hsa-miR-342-3p hsa-miR-509-3-5p hsa-miR-520b hsa-miR-130a* hsa-miR-23c
    SwitchGear 3'UTR luciferase reporter plasmidRAD23B 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat RAD23B

    Gene Editing
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    GenScript: all cDNA clones in your preferred vector: RAD23B (NM_002874)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RAD23B
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RAD23B
    Addgene plasmids for RAD23B 

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    RD23B_HUMAN, P54727: Nucleus. Cytoplasm. Note=The intracellular distribution is cell cycle dependent. Localized
    to the nucleus and the cytoplasm during G1 phase. Nuclear levels decrease during S-phase; upon entering mitosis,
    relocalizes in the cytoplasm without association with chromatin
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5
    cytosol4

    Gene Ontology (GO): Selected cellular component terms (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000502proteasome complex IEA--
    GO:0005634nucleus IDA--
    GO:0005654nucleoplasm TAS--
    GO:0005730NOT nucleolus IDA--
    GO:0005737cytoplasm IDA--

    Find genes that share ontologies with RAD23B           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for RAD23B About    
    See pathways by source

    SuperPathContained pathways About
    1Global Genomic NER (GG-NER)
    Global Genomic NER (GG-NER)0.69
    Formation of incision complex in GG-NER0.62
    Nucleotide excision repair0.69
    Nucleotide Excision Repair Pathway0.48
    Dual incision reaction in GG-NER0.62
    DNA Damage Recognition in GG-NER0.00
    2DNA Repair
    Nucleotide Excision Repair0.90
    DNA Repair0.45
    3Chks in Checkpoint Regulation
    DNA Repair Mechanisms0.32
    4Protein processing in endoplasmic reticulum
    Protein processing in endoplasmic reticulum


    Find genes that share SuperPaths with RAD23B           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways

    2 Downloadable PowerPoint Slides of GeneGlobe Pathway Central Maps for RAD23B
        DNA Repair Mechanisms
    Nucleotide Excision Repair Pathway

    3 Reactome Pathways for RAD23B
        DNA Damage Recognition in GG-NER
    Formation of incision complex in GG-NER
    Dual incision reaction in GG-NER


    2 Kegg Pathways  (Kegg details for RAD23B):
        Nucleotide excision repair
    Protein processing in endoplasmic reticulum

        Pathway & Disease-focused RT2 Profiler PCR Array including RAD23B: 
              DNA Repair in human mouse rat

    Interactions:

        GeneGlobe Interaction Network for RAD23B

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for RAD23B (P547271, 2, 3 ENSP000003507084) via UniProtKB, MINT, STRING, and/or I2D (see all 312)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PSMD4P550361, 2, 3, ENSP000003578794EBI-954531,EBI-359318 MINT-7307775 MINT-7307859 MINT-7311293 MINT-3373412 MINT-7311345 MINT-7307505 MINT-7311314 I2D: score=15 STRING: ENSP00000357879
    ATXN3P542521, 2, 3, ENSP000003523244EBI-954531,EBI-946046 MINT-2790957 MINT-2862523 I2D: score=4 STRING: ENSP00000352324
    ADRM1Q161861, 2, 3, ENSP000002530034EBI-954531,EBI-954387 MINT-7308221 MINT-7308848 I2D: score=2 STRING: ENSP00000253003
    VIMP086701, 2, 3, ENSP000002242374EBI-954531,EBI-353844 MINT-2791154 MINT-2791422 I2D: score=1 STRING: ENSP00000224237
    BRCA1P383982, 3, ENSP000003502834MINT-2791487 I2D: score=1 STRING: ENSP00000350283
    About this table

    Gene Ontology (GO): Selected biological process terms (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000715nucleotide-excision repair, DNA damage recognition TAS--
    GO:0000718nucleotide-excision repair, DNA damage removal TAS--
    GO:0006281DNA repair TAS--
    GO:0006289nucleotide-excision repair TAS--
    GO:0006974cellular response to DNA damage stimulus ----

    Find genes that share ontologies with RAD23B           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
    About This Section

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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RAD23B (RD23B)

    2 Novoseek inferred chemical compound relationships for RAD23B gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    proline 25.7 1 16712842 (1)
    glutamine 19.7 1 16860562 (1)



    Find genes that share compounds with RAD23B           About GenesLikeMe



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for RAD23B gene (3 alternative transcripts): 
    NM_001244713.1  NM_001244724.1  NM_002874.4  

    Unigene Cluster for RAD23B:

    RAD23 homolog B (S. cerevisiae)
    Hs.521640  [show with all ESTs]
    Unigene Representative Sequence: NM_002874
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000419616 ENST00000358015(uc011lwa.2 uc004bde.3 uc022blj.1 uc011lwb.2)
    ENST00000442587 ENST00000457811 ENST00000416373
    miRNA
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    hsa-miR-361-5p hsa-miR-106a hsa-miR-3074-3p hsa-miR-342-3p hsa-miR-509-3-5p hsa-miR-520b hsa-miR-130a* hsa-miR-23c
    SwitchGear 3'UTR luciferase reporter plasmidRAD23B 3' UTR sequence
    Inhib. RNA
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    GenScript: all cDNA clones in your preferred vector: RAD23B (NM_002874)
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    Addgene plasmids for RAD23B 
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      QuantiTect SYBR Green Assays in human, mouse, rat RAD23B
      QuantiFast Probe-based Assays in human, mouse, rat RAD23B

    Additional mRNA sequence: 

    AK125226.1 AK223479.1 AK297986.1 AK316189.1 AY313777.1 BC015805.1 BC020973.2 D21090.1 

    Selected DOTS entries (see all 29):

    DT.99954880  DT.219196  DT.101984640  DT.95205412  DT.450539  DT.95250861  DT.121174023  DT.100029767 
    DT.100009655  DT.95205414  DT.435114  DT.91771796  DT.121174007  DT.91701915  DT.95205417  DT.120912712 
    DT.75100900  DT.92408727  DT.95255878  DT.100733044  DT.100795713  DT.121173970  DT.121631023  DT.91795561 

    Selected AceView cDNA sequences (see all 534):

    AI821397 N48034 BM758143 BQ189387 BU734993 AA287582 AA782757 N44512 
    BM846302 T92884 BP374853 BM451113 AW264174 AI677733 AI446146 NM_002874 
    F10013 BU735736 AI338185 AW076014 AA279208 AI142940 AA393532 BP366631 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for RAD23B    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b · 12c ^ 13
    SP1:        -     -                                                                                                         
    SP2:              -                                                                                                         
    SP3:                                                                                                                        
    SP4:                                                                    -     -     -     -                                 
    SP5:                                                                          -     -     -     -     -     -     -         


    ECgene alternative splicing isoforms for RAD23B

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

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    RAD23B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: ATTTGAGAAG
    RAD23B Expression
    About this image


    RAD23B expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 23) fully expand
     
     Brain (Nervous System)    fully expand to see all 4 entries
             Cerebral Cortex
     
     Ovary (Reproductive System)    fully expand to see all 2 entries
             Ovarian Mesenchymal Stroma Cells Ovary Interstitium
             Oviduct
     
     Intermediate Mesoderm (Gastrulation Derivatives)    fully expand to see all 2 entries
             Mesonephric cells Mesonephros
             Mesonephros
     
     Liver (Hepatobiliary System)
             Hepatocytes Liver Lobule
     
     Gonad
             Mesonephric cells Mesonephros
    RAD23B Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RAD23B Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.521640
        Pathway & Disease-focused RT2 Profiler PCR Array including RAD23B: 
              DNA Repair in human mouse rat

    Primer
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAD23B

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

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    This gene was present in the common ancestor of eukaryotes.

    Orthologs for RAD23B gene from Selected species (see all 23)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rad23b1 , 5 RAD23b homolog (S. cerevisiae)1, 5 88.56(n)1
    90.93(a)1
      4 (29.70 cM)5
    193591  NM_009011.41  NP_033037.21 
     553500435 
    chicken
    (Gallus gallus)
    Aves RAD23B1 RAD23 homolog B (S. cerevisiae) 78.59(n)
    79.09(a)
      431623  XM_429175.4  XP_429175.3 
    lizard
    (Anolis carolinensis)
    Reptilia RAD23B6
    RAD23 homolog B (S. cerevisiae)
    81(a)
    1 ↔ 1
    GL343218.1(2262304-2305363)
    African clawed frog
    (Xenopus laevis)
    Amphibia MGC535612 similar to RAD23 homolog B (S. cerevisiae) 82.22(n)    BC044089.1 
    zebrafish
    (Danio rerio)
    Actinopterygii rad23b1 RAD23 homolog B (S. cerevisiae) 68.1(n)
    75.47(a)
      393536  NM_200564.1  NP_956858.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Rad231 , 3 nucleotide-excision repair damaged DNA
    binding3
    Rad231
    36(a)3
    51.75(n)1
    45.58(a)1
      102B53
    437851  NM_001272123.11  NP_001259052.11 
    worm
    (Caenorhabditis elegans)
    Secernentea rad-231 rad-23 52.98(n)
    45.14(a)
      174785  NM_064087.6  NP_496488.2 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes RAD23(YEL037C)4
    RAD231
    Protein with ubiquitin-like N terminus, subunit of more4
    RAD231
    47.66(n)1
    36.36(a)1
      5(82603-81407)4
    8566741, 4  NP_010877.31  NP_010877.14 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons RAD23D1 RAD23D 52.55(n)
    43.23(a)
      833835  NM_123208.1  NP_198663.1 
    rice
    (Oryza sativa)
    Liliopsida Os08g04302001 Os08g0430200 50.82(n)
    40.16(a)
      4345632  NM_001068389.1  NP_001061854.1 


    ENSEMBL Gene Tree for RAD23B (if available)
    TreeFam Gene Tree for RAD23B (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for RAD23B gene
    RAD23A2  
    2 SIMAP similar genes for RAD23B using alignment to 5 protein entries:     RD23B_HUMAN (see all proteins):
    RAD23A    NEDD8

    Find genes that share paralogs with RAD23B           About GenesLikeMe


    2 Pseudogenes.org Pseudogenes for RAD23B
    PGOHUM00000259845 PGOHUM00000260370


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RAD23B (see all 1258)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 9 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1419878251,2
    --79645346(+) TGCAGC/GGGGGA 1 -- us2k10--------
    rs1835729231,2
    --110043592(+) AGCTAA/CGGGGA 1 -- us2k10--------
    rs776914761,2
    F--110043711(+) TGAAGG/TGAGTT 1 -- us2k11Minor allele frequency- T:0.03WA 118
    rs787794201,2
    C--110043891(+) AGTGGC/TCTGAC 1 -- us2k10--------
    rs1118663721,2
    C,F--110043938(+) GCCACA/TGGCAC 1 -- us2k13Minor allele frequency- T:0.10WA CSA 122
    rs1419019851,2
    C--110043955(+) AAACA-/GAGGAGAA 1 -- us2k10--------
    rs70402171,2
    C,F,A--110043971(+) CTGGGA/CGCGAT 1 -- us2k19Minor allele frequency- C:0.33WA NA CSA EA 369
    rs1882069311,2
    --110044003(+) CTTTGA/GGACTC 1 -- us2k10--------
    rs802798861,2
    C,F--110044205(+) GTGCTA/CCAGCG 1 -- us2k11Minor allele frequency- C:0.04WA 118
    rs1915562221,2
    --110044273(+) AAAACA/TGGGGA 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for RAD23B (110045418 - 110094475 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 7 variations for RAD23B:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2669320CNV Deletion23128226
    esv2738897CNV Deletion23290073
    esv2738896CNV Deletion23290073
    nsv508560CNV Loss20534489
    nsv831682CNV Gain17160897
    nsv519266CNV Gain19592680
    nsv893698CNV Gain21882294

    Human Gene Mutation Database (HGMD): RAD23B
    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing RAD23B
    DNA2.0 Custom Variant and Variant Library Synthesis for RAD23B

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 600062    OMIM disorders: --

    3 diseases for RAD23B:    
    About MalaCards
    xeroderma pigmentosum, group c    mutagen sensitivity    xeroderma pigmentosum

    2 diseases from the University of Copenhagen DISEASES database for RAD23B:
    Xeroderma pigmentosum     Cockayne syndrome

    Find genes that share disorders with RAD23B           About GenesLikeMe

    1 Novoseek inferred disease relationship for RAD23B gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    xeroderma pigmentosum 84.1 12 12832454 (2), 16105547 (1), 9372923 (1), 10873465 (1) (see all 7)

    Genetic Association Database (GAD): RAD23B
    Human Genome Epidemiology (HuGE) Navigator: RAD23B (33 documents)

    Export disorders for RAD23B gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RAD23B gene, integrated from 10 sources (see all 147):
    (articles sorted by number of sources associating them with RAD23B)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Purification and cloning of a nucleotide excision repair complex involving the Xeroderma pigmentosum group C protein and a human homologue of yeast RAD23. (PubMed id 8168482)1, 2, 3 Masutani C.... Hanaoka F. (EMBO J. 1994)
    2. Binding surface mapping of intra- and interdomain interactions among hHR23B, ubiquitin, and polyubiquitin binding site 2 of S5a. (PubMed id 12832454)1, 2, 9 Ryu K.-S.... Choi B.-S. (J. Biol. Chem. 2003)
    3. Evidence for distinct functions for human DNA repair factors hHR23A and hHR23B. (PubMed id 16712842)1, 2, 9 Chen L. and Madura K. (FEBS Lett. 2006)
    4. Solution structure and backbone dynamics of the XPC-binding domain of the human DNA repair protein hHR23B. (PubMed id 15885096)1, 2, 9 Kim B.... Choi B.-S. (FEBS J. 2005)
    5. A complex between peptide:N-glycanase and two proteasome-linked proteins suggests a mechanism for the degradation of misfolded glycoproteins. (PubMed id 15358861)1, 2, 9 Katiyar S.... Lennarz W.J. (Proc. Natl. Acad. Sci. U.S.A. 2004)
    6. Structure of the ubiquitin-interacting motif of S5a bound to the ubiquitin-like domain of HR23B. (PubMed id 14585839)1, 2, 9 Fujiwara K.... Shirakawa M. (J. Biol. Chem. 2004)
    7. Chromosomal localization of three repair genes: the xeroderma pigmentosum group C gene and two human homologs of yeast RAD23. (PubMed id 7851894)1, 3, 9 van der Spek P.J....Hagemeijer A. (Genomics 1994)
    8. Ataxin-3, the MJD1 gene product, interacts with the two human homologs of yeast DNA repair protein RAD23, HHR23A and HHR23B. (PubMed id 10915768)1, 2, 9 Wang G.... Nukina N. (Hum. Mol. Genet. 2000)
    9. Stable binding of human XPC complex to irradiated DNA confers strong discrimination for damaged sites. (PubMed id 10873465)1, 2, 9 Batty D.... Wood R.D. (J. Mol. Biol. 2000)
    10. Nucleotide excision repair gene polymorphisms and risk of advanced colorectal adenoma: XPC polymorphisms modify smoking-related risk. (PubMed id 16492920)1, 4, 9 Huang W.Y....Hayes R.B. (amp 2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section

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    Entrez Gene: 5887 HGNC: 9813 AceView: RAD23B Ensembl:ENSG00000119318 euGenes: HUgn5887
    ECgene: RAD23B Kegg: 5887 H-InvDB: RAD23B

    (According to HUGE)
    About This Section

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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
    About This Section

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    NameDescription
    PharmGKB entry for RAD23B Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for RAD23B Genetics and Cytogenetics in Oncology and Haematology
    NIEHS-SNPshttp://egp.gs.washington.edu/data/rad23b/

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RAD23B gene:
    Search GeneIP for patents involving RAD23B

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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