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Aliases for RAD23A Gene

Aliases for RAD23A Gene

  • RAD23 Homolog A, Nucleotide Excision Repair Protein 2 3 5
  • HHR23A 3 4
  • HR23A 3 4
  • RAD23 (S. Cerevisiae) Homolog A 2
  • RAD23 Homolog A (S. Cerevisiae) 2
  • RAD23, Yeast Homolog, A 3
  • Yeast Homolog 2
  • RAD23 2
  • A 2

External Ids for RAD23A Gene

Previous GeneCards Identifiers for RAD23A Gene

  • GC19P013188
  • GC19M013321
  • GC19P012901
  • GC19P012917
  • GC19P013056
  • GC19P012628

Summaries for RAD23A Gene

Entrez Gene Summary for RAD23A Gene

  • The protein encoded by this gene is one of two human homologs of Saccharomyces cerevisiae Rad23, a protein involved in nucleotide excision repair. Proteins in this family have a modular domain structure consisting of an ubiquitin-like domain (UbL), ubiquitin-associated domain 1 (UbA1), XPC-binding domain and UbA2. The protein encoded by this gene plays an important role in nucleotide excision repair and also in delivery of polyubiquitinated proteins to the proteasome. Alternative splicing results in multiple transcript variants encoding multiple isoforms. [provided by RefSeq, Jun 2012]

GeneCards Summary for RAD23A Gene

RAD23A (RAD23 Homolog A, Nucleotide Excision Repair Protein) is a Protein Coding gene. Diseases associated with RAD23A include hiv-1 and xeroderma pigmentosum, group c. Among its related pathways are DNA Double-Strand Break Repair and Transcription-Coupled Nucleotide Excision Repair (TC-NER). GO annotations related to this gene include single-stranded DNA binding and polyubiquitin binding. An important paralog of this gene is RAD23B.

UniProtKB/Swiss-Prot for RAD23A Gene

  • Multiubiquitin chain receptor involved in modulation of proteasomal degradation. Binds to Lys-48-linked polyubiquitin chains in a length-dependent manner and with a lower affinity to Lys-63-linked polyubiquitin chains. Proposed to be capable to bind simultaneously to the 26S proteasome and to polyubiquitinated substrates and to deliver ubiquitinated proteins to the proteasome.

  • Involved in nucleotide excision repair and is thought to be functional equivalent for RAD23B in global genome nucleotide excision repair (GG-NER) by association with XPC. In vitro, the XPC:RAD23A dimer has NER activity. Can stabilize XPC.

  • Involved in vpr-dependent replication of HIV-1 in non-proliferating cells and primary macrophages. Required for the association of HIV-1 vpr with the host proteasome.

Gene Wiki entry for RAD23A Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAD23A Gene

Genomics for RAD23A Gene

Regulatory Elements for RAD23A Gene

Promoters for RAD23A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RAD23A on UCSC Golden Path with GeneCards custom track

Genomic Location for RAD23A Gene

Chromosome:
19
Start:
12,945,814 bp from pter
End:
12,953,643 bp from pter
Size:
7,830 bases
Orientation:
Plus strand

Genomic View for RAD23A Gene

Genes around RAD23A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAD23A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAD23A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAD23A Gene

Proteins for RAD23A Gene

  • Protein details for RAD23A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P54725-RD23A_HUMAN
    Recommended name:
    UV excision repair protein RAD23 homolog A
    Protein Accession:
    P54725
    Secondary Accessions:
    • K7ESE3
    • Q59EU8
    • Q5M7Z1

    Protein attributes for RAD23A Gene

    Size:
    363 amino acids
    Molecular mass:
    39609 Da
    Quaternary structure:
    • Interacts with XPC; the interaction is suggesting the existence of a functional equivalent variant XPC complex. Interacts with PSMD4 and PSMC5. Interacts with ATXN3. Interacts with HIV-1 vpr. Interacts with UBQLN2.
    SequenceCaution:
    • Sequence=BAD92950.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=BX448989; Type=Frameshift; Positions=159, 333, 339, 347; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for RAD23A Gene

    Alternative splice isoforms for RAD23A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RAD23A Gene

Proteomics data for RAD23A Gene at MOPED

Post-translational modifications for RAD23A Gene

  • Ubiquitination at Lys 8, Lys 16, Lys 26, Lys 47, Lys 53, Lys 78, Lys 80, and Lys 122
  • Modification sites at PhosphoSitePlus

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for RAD23A (RAD23A)

No data available for DME Specific Peptides for RAD23A Gene

Domains & Families for RAD23A Gene

Graphical View of Domain Structure for InterPro Entry

P54725

UniProtKB/Swiss-Prot:

RD23A_HUMAN :
  • The ubiquitin-like domain mediates interaction with ATXN3.
  • Belongs to the RAD23 family.
Domain:
  • The ubiquitin-like domain mediates interaction with ATXN3.
  • The ubiquitin-like (UBL) and the UBA (ubiquitin-associated) domains interact intramolecularly in a highly dynamic manner, as each UBA domain competes for an overlapping UBL domain surface. Binding of ubiquitin or proteasome subunit PSMD4 disrupt the UBL-UBA domain interactions and drive RAD23A in to an open conformation.
  • Contains 2 UBA domains.
  • Contains 1 ubiquitin-like domain.
Family:
  • Belongs to the RAD23 family.
genes like me logo Genes that share domains with RAD23A: view

No data available for Gene Families for RAD23A Gene

Function for RAD23A Gene

Molecular function for RAD23A Gene

GENATLAS Biochemistry:
yeast (S cerevisiae) RAD23 homolog A,ubiquitin conjugating enzyme E3A,involved in the degradation of short-lived and abnormal proteins
UniProtKB/Swiss-Prot Function:
Multiubiquitin chain receptor involved in modulation of proteasomal degradation. Binds to Lys-48-linked polyubiquitin chains in a length-dependent manner and with a lower affinity to Lys-63-linked polyubiquitin chains. Proposed to be capable to bind simultaneously to the 26S proteasome and to polyubiquitinated substrates and to deliver ubiquitinated proteins to the proteasome.
UniProtKB/Swiss-Prot Function:
Involved in nucleotide excision repair and is thought to be functional equivalent for RAD23B in global genome nucleotide excision repair (GG-NER) by association with XPC. In vitro, the XPC:RAD23A dimer has NER activity. Can stabilize XPC.
UniProtKB/Swiss-Prot Function:
Involved in vpr-dependent replication of HIV-1 in non-proliferating cells and primary macrophages. Required for the association of HIV-1 vpr with the host proteasome.

Gene Ontology (GO) - Molecular Function for RAD23A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003697 single-stranded DNA binding TAS 8168482
genes like me logo Genes that share ontologies with RAD23A: view
genes like me logo Genes that share phenotypes with RAD23A: view

Animal Models for RAD23A Gene

MGI Knock Outs for RAD23A:

Animal Model Products

miRNA for RAD23A Gene

Inhibitory RNA Products

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for RAD23A Gene

Localization for RAD23A Gene

Subcellular locations from UniProtKB/Swiss-Prot for RAD23A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RAD23A Gene COMPARTMENTS Subcellular localization image for RAD23A gene
Compartment Confidence
nucleus 5
cytosol 3
mitochondrion 2
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for RAD23A Gene

Pathways & Interactions for RAD23A Gene

genes like me logo Genes that share pathways with RAD23A: view

Gene Ontology (GO) - Biological Process for RAD23A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006974 cellular response to DNA damage stimulus IEA --
genes like me logo Genes that share ontologies with RAD23A: view

No data available for SIGNOR curated interactions for RAD23A Gene

Drugs & Compounds for RAD23A Gene

(1) Drugs for RAD23A Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with RAD23A: view

Transcripts for RAD23A Gene

Unigene Clusters for RAD23A Gene

RAD23 homolog A (S. cerevisiae):
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RAD23A Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c ^ 7a · 7b · 7c · 7d ^ 8 ^ 9 ^ 10a · 10b · 10c · 10d
SP1: -
SP2: -
SP3: - -
SP4: - - -
SP5: -
SP6: - - - - -
SP7: - - -
SP8: - - - -
SP9:
SP10: - -

Relevant External Links for RAD23A Gene

GeneLoc Exon Structure for
RAD23A
ECgene alternative splicing isoforms for
RAD23A

Expression for RAD23A Gene

mRNA expression in normal human tissues for RAD23A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RAD23A Gene

This gene is overexpressed in Muscle - Skeletal (x8.2).

Protein differential expression in normal tissues from HIPED for RAD23A Gene

This gene is overexpressed in Lavage (9.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for RAD23A Gene



SOURCE GeneReport for Unigene cluster for RAD23A Gene Hs.643267

genes like me logo Genes that share expression patterns with RAD23A: view

Protein tissue co-expression partners for RAD23A Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for RAD23A Gene

Orthologs for RAD23A Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RAD23A Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RAD23A 35
  • 92.91 (n)
  • 96.41 (a)
RAD23A 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RAD23A 35
  • 93 (n)
  • 97.51 (a)
RAD23A 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rad23a 35
  • 89.23 (n)
  • 94.75 (a)
Rad23a 16
Rad23a 36
  • 95 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RAD23A 35
  • 97.51 (n)
  • 96.96 (a)
RAD23A 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rad23a 35
  • 88.04 (n)
  • 93.92 (a)
oppossum
(Monodelphis domestica)
Mammalia RAD23A 36
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RAD23A 36
  • 81 (a)
OneToOne
chicken
(Gallus gallus)
Aves RAD23A 36
  • 86 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 80 (a)
OneToMany
-- 36
  • 57 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii rad23aa 35
  • 67.42 (n)
  • 65.82 (a)
zgc65951 35
rad23aa 36
  • 62 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Rad23 37
  • 40 (a)
CG10694 36
  • 33 (a)
ManyToMany
Rad23 36
  • 37 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea rad-23 36
  • 36 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RAD23 36
  • 30 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons RAD23B 35
  • 48.62 (n)
  • 42.98 (a)
rice
(Oryza sativa)
Liliopsida Os02g0179300 35
  • 50.15 (n)
  • 40.12 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.2042 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1944 36
  • 44 (a)
OneToMany
Species with no ortholog for RAD23A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for RAD23A Gene

ENSEMBL:
Gene Tree for RAD23A (if available)
TreeFam:
Gene Tree for RAD23A (if available)

Paralogs for RAD23A Gene

Paralogs for RAD23A Gene

(8) SIMAP similar genes for RAD23A Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with RAD23A: view

Variants for RAD23A Gene

Sequence variations from dbSNP and Humsavar for RAD23A Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs11558955 - 12,948,333(+) CCCCC(A/G)CGACG nc-transcript-variant, reference, missense
rs4987202 - 12,948,812(+) GCTCA(C/T)GGTGA nc-transcript-variant, reference, missense
rs4987203 - 12,948,749(+) AGAGC(A/G)GGTCG nc-transcript-variant, reference, missense
rs4944 -- 12,948,771(+) AGAGC(C/T)AGCTA nc-transcript-variant, reference, synonymous-codon
rs7395 -- 12,953,508(+) CCAAG(G/T)CCCCC nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for RAD23A Gene

Variant ID Type Subtype PubMed ID
nsv911082 CNV Loss 21882294
nsv833754 CNV Loss 17160897
nsv911085 CNV Loss 21882294

Variation tolerance for RAD23A Gene

Residual Variation Intolerance Score: 42.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.93; 59.54% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RAD23A Gene

HapMap Linkage Disequilibrium report
RAD23A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RAD23A Gene

Disorders for RAD23A Gene

MalaCards: The human disease database

(2) MalaCards diseases for RAD23A Gene - From: GeneCards

Disorder Aliases PubMed IDs
hiv-1
  • aids, slow progression to
xeroderma pigmentosum, group c
  • xeroderma pigmentosum, type 3
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for RAD23A

Genetic Association Database (GAD)
RAD23A
Human Genome Epidemiology (HuGE) Navigator
RAD23A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAD23A
genes like me logo Genes that share disorders with RAD23A: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RAD23A Gene

Publications for RAD23A Gene

  1. DNA-repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5a. (PMID: 14557549) Walters K.J. … Howley P.M. (Proc. Natl. Acad. Sci. U.S.A. 2003) 3 4 23 67
  2. Chromosomal localization of three repair genes: the xeroderma pigmentosum group C gene and two human homologs of yeast RAD23. (PMID: 7851894) van der Spek P.J. … Hagemeijer A. (Genomics 1994) 2 3 23
  3. Differential contribution of XPC, RAD23A, RAD23B and CENTRIN 2 to the UV-response in human cells. (PMID: 21676658) Renaud E. … Angulo J.F. (DNA Repair (Amst.) 2011) 2 3
  4. Crystallization and preliminary X-ray diffraction studies of the ubiquitin-like (UbL) domain of the human homologue A of Rad23 (hHR23A) protein. (PMID: 19724136) Chen Y.W. … Garcia-Maya M. (Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 2009) 3 23
  5. Components of the ubiquitin-proteasome pathway compete for surfaces on Rad23 family proteins. (PMID: 18234089) Goh A.M. … Howley P.M. (BMC Biochem. 2008) 3 23

Products for RAD23A Gene

Sources for RAD23A Gene

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