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Aliases for RAD21-AS1 Gene

Subcategory (RNA class) for RAD21-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAD21-AS1 Gene

  • RAD21 Antisense RNA 1 2 3 5
  • RAD21 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 8 Open Reading Frame 81 2
  • Non-Protein Coding RNA 255 2
  • NCRNA00255 3
  • C8orf81 3

External Ids for RAD21-AS1 Gene

Previous HGNC Symbols for RAD21-AS1 Gene

  • C8orf81
  • NCRNA00255

Previous GeneCards Identifiers for RAD21-AS1 Gene

  • GC08P117888

Summaries for RAD21-AS1 Gene

GeneCards Summary for RAD21-AS1 Gene

RAD21-AS1 (RAD21 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAD21-AS1 Gene

Genomics for RAD21-AS1 Gene

Regulatory Elements for RAD21-AS1 Gene

Enhancers for RAD21-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F116900 0.8 ENCODE 11.4 +27.1 27079 1.8 GTF2F1 TBP JUN BRCA1 RFX5 RELA EED SMC3 RCOR1 ETV6 RAD21 RAD21-AS1 MIR3610 AARD SLC30A8 PIR55072
GH08F116801 0.7 ENCODE 11 -71.8 -71837 1.9 DPF2 RAD21 ZNF217 CTBP1 JUND GATA3 SMARCA4 CUX1 MAFK SPI1 AARD MIR3610 RAD21 RAD21-AS1 GC08P116801 ENSG00000281527
GH08F116837 0.6 ENCODE 10.5 -36.5 -36538 0.1 GATA3 CTBP1 MYNN CUX1 DPF2 TCF7L2 MIR3610 RAD21 RAD21-AS1 ENSG00000281527 GC08P116801
GH08F116926 0.6 Ensembl 10.4 +52.5 52547 0.4 ZNF217 OSR2 GFI1B FEZF1 ZNF843 SLC30A8 MIR3610 RAD21 RAD21-AS1 AARD PIR55072
GH08F116849 0.4 ENCODE 12 -25.0 -24978 0.2 FOS RAD21-AS1 RAD21 MIR3610 ENSG00000281527 GC08P116801
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RAD21-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RAD21-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001399570 -624 3600 HDGF PKNOX1 ATF1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ETS1 YY1

Genomic Location for RAD21-AS1 Gene

Chromosome:
8
Start:
116,874,424 bp from pter
End:
116,876,868 bp from pter
Size:
2,445 bases
Orientation:
Plus strand

Genomic View for RAD21-AS1 Gene

Genes around RAD21-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAD21-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAD21-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAD21-AS1 Gene

Proteins for RAD21-AS1 Gene

Post-translational modifications for RAD21-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAD21-AS1 Gene

Domains & Families for RAD21-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAD21-AS1 Gene

Function for RAD21-AS1 Gene

Phenotypes for RAD21-AS1 Gene

GenomeRNAi human phenotypes for RAD21-AS1:
genes like me logo Genes that share phenotypes with RAD21-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAD21-AS1 Gene

Localization for RAD21-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAD21-AS1 Gene

Pathways & Interactions for RAD21-AS1 Gene

SuperPathways for RAD21-AS1 Gene

No Data Available

Interacting Proteins for RAD21-AS1 Gene

Gene Ontology (GO) - Biological Process for RAD21-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAD21-AS1 Gene

Transcripts for RAD21-AS1 Gene

mRNA/cDNA for RAD21-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RAD21-AS1 Gene

RAD21 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAD21-AS1 Gene

No ASD Table

Relevant External Links for RAD21-AS1 Gene

GeneLoc Exon Structure for
RAD21-AS1
ECgene alternative splicing isoforms for
RAD21-AS1

Expression for RAD21-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RAD21-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RAD21-AS1 Gene

This gene is overexpressed in Testis (x9.2).

SOURCE GeneReport for Unigene cluster for RAD21-AS1 Gene:

Hs.706174
genes like me logo Genes that share expression patterns with RAD21-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RAD21-AS1 Gene

Orthologs for RAD21-AS1 Gene

Evolution for RAD21-AS1 Gene

ENSEMBL:
Gene Tree for RAD21-AS1 (if available)
TreeFam:
Gene Tree for RAD21-AS1 (if available)

No data available for Orthologs for RAD21-AS1 Gene

Paralogs for RAD21-AS1 Gene

No data available for Paralogs for RAD21-AS1 Gene

Variants for RAD21-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAD21-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10090189 -- 116,873,636(+) ACGCT(G/T)TTTTT intron-variant, upstream-variant-2KB
rs10094194 -- 116,874,743(+) GCCGG(C/G/T)GCCTC nc-transcript-variant, utr-variant-5-prime
rs10094803 -- 116,875,286(+) TCTGG(A/G)TATAA intron-variant, upstream-variant-2KB
rs10094918 -- 116,875,369(+) CTTAT(C/T)TTAAA intron-variant, upstream-variant-2KB
rs112072631 -- 116,874,752(+) TCCTT(G/T)CCGAT nc-transcript-variant, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for RAD21-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1144231 CNV deletion 24896259
nsv6359 CNV insertion 18451855
nsv831434 CNV gain 17160897

Relevant External Links for RAD21-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAD21-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAD21-AS1 Gene

Disorders for RAD21-AS1 Gene

Relevant External Links for RAD21-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAD21-AS1

No disorders were found for RAD21-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAD21-AS1 Gene

Publications for RAD21-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RAD21-AS1 Gene

Sources for RAD21-AS1 Gene

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