Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RAD17 Gene

protein-coding   GIFtS: 64
GCID: GC05P068700

RAD17 homolog (S. pombe)

(Previous name: RAD1 (S. pombe) homolog )
 Explore 14 diseases affiliated with
RAD17 via our new
 Human Malady Compendium 
Biological research products
for RAD17
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
RAD17 Homolog (S. Pombe)1 2     RAD17SP2
CCYC1 2     RAD242
R24L2 3     Cell Cycle Checkpoint Protein (RAD17)2
RF-C/Activator 1 Homolog2 3     Cell Cycle Checkpoint Protein RAD172
RAD17Sp1     RAD1 Homolog2
Rad241     Rad17-Like Protein2
RAD1 (S. Pombe) Homolog1     RF-C Activator 1 Homolog2
HRAD172     HRad171

External Ids:    HGNC: 98071   Entrez Gene: 58842   Ensembl: ENSG000001529427   OMIM: 6031395   UniProtKB: O759433   

Export aliases for RAD17 gene to outside databases

Previous GC identifers: GC05P068817 GC05P070230 GC05P068635 GC05P068683 GC05P068684 GC05P065621


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RAD17:
The protein encoded by this gene is highly similar to the gene product of Schizosaccharomyces pombe rad17, a cell cycle
checkpoint gene required for cell cycle arrest and DNA damage repair in response to DNA damage. This protein shares
strong similarity with DNA replication factor C (RFC), and can form a complex with RFCs. This protein binds to
chromatin prior to DNA damage and is phosphorylated by the checkpoint kinase ATR following damage. This protein
recruits the RAD1-RAD9-HUS1 checkpoint protein complex onto chromatin after DNA damage, which may be required for its
phosphorylation. The phosphorylation of this protein is required for the DNA-damage-induced cell cycle G2 arrest, and
is thought to be a critical early event during checkpoint signaling in DNA-damaged cells. Eight alternatively spliced
transcript variants of this gene, which encode four distinct proteins, have been reported. Two pseudogenes, located on
chromosomes 7 and 13, have been identified. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: RAD17_HUMAN, O75943
Function: Essential for sustained cell growth, maintenance of chromosomal stability, and ATR-dependent checkpoint
activation upon DNA damage. Has a weak ATPase activity required for binding to chromatin. Participates in the
recruitment of the RAD1-RAD9-HUS1 complex and RHNO1 onto chromatin, and in CHEK1 activation. May also serve as a
sensor of DNA replication progression, and may be involved in homologous recombination

Gene Wiki entry for RAD17


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000005.9  NC_018916.1  NT_006713.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RAD17 gene promoter:
         ATF-2   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 5): RAD17 promoter sequence
   Search SABiosciences Chromatin IP Primers for RAD17

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RAD17


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q13   Ensembl cytogenetic band:  5q13.2   HGNC cytogenetic band: 5q13

RAD17 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RAD17 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05P068700:  view genomic region     (about GC identifiers)

Start:
68,665,120 bp from pter      End:
68,710,628 bp from pter
Size:
45,509 bases      Orientation:
plus strand

1 alternative location:
Chr5+,PATCHES 69,057,486-69,103,217     

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RAD17_HUMAN, O75943 (See protein sequence)
Recommended Name: Cell cycle checkpoint protein RAD17  
Size: 681 amino acids; 77055 Da
Subunit: Part of a DNA-binding complex containing RFC2, RFC3, RFC4 and RFC5. Interacts with RAD1 and RAD9 within the
RAD1-RAD9-HUS1 complex. Interacts with RAD9B, POLE, NHP2L1 and MCM7. DNA damage promotes interaction with ATR or ATM
and disrupts interaction with the RAD1-RAD9-HUS1 complex
Subcellular location: Nucleus. Note=Phosphorylated form redistributes to discrete nuclear foci upon DNA damage
Secondary accessions: A8K8X2 D3DWA5 O75714 Q7Z3S4 Q9UNK7 Q9UNR7 Q9UNR8 Q9UPF5
Alternative splicing: 4 isoforms:  O75943-1   O75943-2   O75943-3   O75943-4   

Explore the universe of human proteins at neXtProt for RAD17: NX_O75943

Post-translational modifications:

  • Phosphorylated. Phosphorylation on Ser-646 and Ser-656 is cell cycle-regulated, enhanced by genotoxic stress, and
  • required for activation of checkpoint signaling. Phosphorylation is mediated by ATR upon UV or replication arrest,
    whereas it may be mediated both by ATR and ATM upon ionizing radiation. Phosphorylation on both sites is required for
    interaction with RAD1 but dispensable for interaction with RFC3 or RFC41
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_O75943

  • RAD17 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (8 alternative transcripts): 
    NP_002864.1  NP_579916.1  NP_579917.1  NP_579918.1  NP_579919.1  NP_579920.1  NP_579921.1  NP_579922.1  

    ENSEMBL proteins: 
     ENSP00000355226   ENSP00000423060   ENSP00000426191   ENSP00000346938   ENSP00000427743  
     ENSP00000346271   ENSP00000311227   ENSP00000427673   ENSP00000424696   ENSP00000303134  
     ENSP00000282891   ENSP00000370151   ENSP00000424289   ENSP00000425005   ENSP00000350725  
    Reactome Protein details: O75943
    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate (see all 8): RAD17
    OriGene Custom Protein Services for RAD17 
    GenScript Custom Purified and Recombinant Proteins Services for RAD17
    Novus Biologicals RAD17 Proteins
    Novus Biologicals RAD17 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for RAD17

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000781colocalizes with chromosome, telomeric region IDA15149599
    GO:0005634nucleus IDA--
    GO:0005654nucleoplasm TAS--
    GO:0005730NOT nucleolus IDA--


    RAD17 for ontologies           About GeneDecksing



    RAD17 Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of RAD17
    R&D Systems Antibodies for RAD17
    Cell Signaling Technology (CST) Antibodies for RAD17 
    OriGene Antibodies (see all 2): RAD17
    OriGene Custom Antibody Services for RAD17 
    GenScript Custom Superior Antibodies Services for RAD17
    Novus Biologicals RAD17 Antibodies
    Abcam antibodies for RAD17 
    Uscn Antibodies for RAD17
    ThermoFisher Antibodies for RAD17

    Assay Products for RAD17: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    R&D Systems Multiplex/Array Assay Kits & Reagents for RAD17
    GenScript Custom Assay Services for RAD17
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for RAD17


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    RAD17 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR004582 Checkpoint_prot_Rad17_Rad24
     IPR018324 Checkpoint_prot_Rad24_fun/met
     IPR003593 AAA+_ATPase

    Graphical View of Domain Structure for InterPro Entry O75943

    ProtoNet protein and cluster: O75943

    UniProtKB/Swiss-Prot: RAD17_HUMAN, O75943
    Similarity: Belongs to the rad17/RAD24 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: RAD17_HUMAN, O75943
    Function: Essential for sustained cell growth, maintenance of chromosomal stability, and ATR-dependent checkpoint
    activation upon DNA damage. Has a weak ATPase activity required for binding to chromatin. Participates in the
    recruitment of the RAD1-RAD9-HUS1 complex and RHNO1 onto chromatin, and in CHEK1 activation. May also serve as a
    sensor of DNA replication progression, and may be involved in homologous recombination
    Induction: Isoform 1, isoform 3 and isoform 4 are induced by X-ray irradiation

         Genatlas biochemistry entry for RAD17:
    cell cycle G2 checkpoint control gene,homologous to S.pombe,RAD17 S cerevisiae RAD24,with two alternatively spliced
    isoforms,highly expressed in the testis,seminone and cancer cell lines (in colon carcinoma),interacting with
    RAD1(interaction protein-protein in the cell cycle checkpoint machinery),required for S-phase and G2/M arrest in
    response to DNA damage or incomplete DNA replication,expressed in testis and seminoma

    miRNA
    Products:
        
    OriGene 3'-UTR Clone (see all 8): RAD17
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RAD17
    8/12 QIAGEN miScript miRNA Assays for microRNAs that regulate RAD17 (see all 12):
    hsa-miR-3910 hsa-miR-3200-5p hsa-miR-205 hsa-miR-4251 hsa-miR-130a* hsa-miR-23c hsa-miR-181a-2* hsa-miR-124
    SwitchGear 3'UTR luciferase reporter plasmidRAD17 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RAD17 (see all 7)
    OriGene shRNA RFP: RAD17
    OriGene siRNA: RAD17
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RAD17

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for RAD17

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RAD17 (see all 10)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RAD17 (see all 9)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 8): RAD17 (NM_133338)
    Sino Biological Human cDNA Clone for RAD17
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RAD17
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RAD17 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for RAD17
    Search LifeMap BioReagents cell lines for RAD17

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAD17

    Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI15538388
    GO:0005524ATP binding IEA--
    GO:0017111nucleoside-triphosphatase activity IEA--


    RAD17 for ontologies           About GeneDecksing


    3 GenomeRNAi human phenotypes for RAD17:
     Decreased POU5F1-GFP protein e  Increased cell number in G1, a  Upregulation of Wnt/beta-caten 

    Animal Models:
         Mouse knock-out Rad17tm1Maas for RAD17
         6 MGI mutant phenotypes (inferred from 1 allele(MGI details for Rad17):
     cardiovascular system  craniofacial  embryogenesis  liver/biliary system  mortality/aging 
     nervous system 

    RAD17 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/7 super-pathways (see all 7About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Activation of ATR in response to replication stress
    Activation of ATR in response to replication stress1.00
    G2/M Checkpoints0.86
    2Chks in Checkpoint Regulation
    Chks in Checkpoint Regulation1.00
    DNA Repair Mechanisms0.32
    3Cell Cycle / Checkpoint Control
    Cell Cycle / Checkpoint Control1.00
    4Cell Cycle
    Cell Cycle1.00
    5DNA Damage Induced 14-3-3Sigma Signaling
    DNA Damage Induced 14-3-3Sigma Signaling1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    3 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for RAD17
        DNA Repair Mechanisms
    Chks in Checkpoint Regulation
    DNA Damage Induced 14-3-3Sigma Signaling

    1 Cell Signaling Technology (CST) Pathway for RAD17
        Cell Cycle / Checkpoint Control

    1 BioSystems Pathway for RAD17 
        DNA damage response

    4        Reactome Pathways for RAD17
        Activation of ATR in response to replication stress
    Cell Cycle
    G2/M Checkpoints
    Cell Cycle Checkpoints



    RAD17 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for RAD17

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/53 Interacting proteins for RAD17 (O759432, 3 ENSP000003701514) via UniProtKB, MINT, STRING, and/or I2D (see all 53)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    FZR1Q9UM112, 3, ENSP000003785294MINT-7897581 MINT-7897592 I2D: score=1 STRING: ENSP00000378529
    RAD9AQ996382, 3, ENSP000003113604MINT-7897390 I2D: score=4 STRING: ENSP00000311360
    NHP2L1P557693, ENSP000002159564I2D: score=3 STRING: ENSP00000215956
    HUS1O609213, ENSP000002587744I2D: score=2 STRING: ENSP00000258774
    RAD1O606713, ENSP000003408794I2D: score=2 STRING: ENSP00000340879
    About this table

    Gene Ontology (GO): 5/10 biological process terms (GO ID links to tree view) (see all 10):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000075cell cycle checkpoint TAS--
    GO:0000076DNA replication checkpoint TAS9660800
    GO:0000077DNA damage checkpoint IMP15538388
    GO:0006260DNA replication TAS--
    GO:0006281DNA repair IEA--


    RAD17 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    RAD17 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RAD17
    3 Novoseek chemical compound relationships for RAD17 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    hydroxyurea 32.6 1 14643437 (1)
    serine 8.06 2 11687627 (1), 18160429 (1)
    atp 0 1 15014082 (1)

    Search CenterWatch for drugs/clinical trials and news about RAD17 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RAD17 gene (8 alternative transcripts): 
    NM_002873.1  NM_133338.1  NM_133339.1  NM_133340.1  NM_133341.1  NM_133342.1  NM_133343.1  NM_133344.1  

    Unigene Cluster for RAD17:

    RAD17 homolog (S. pombe)
    Hs.16184  [show with all ESTs]
    Unigene Representative Sequence: AF076838
    18/19 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 19):
    ENST00000514066 ENST00000361732(uc003jwg.3) ENST00000507927 ENST00000509734(uc003jwk.3)
    ENST00000354868(uc003jwi.3 uc003jwh.3 uc003jwj.3 uc003jwo.3)
    ENST00000511349 ENST00000521422 ENST00000504177 ENST00000354312(uc003jwm.3 uc003jwn.3)
    ENST00000345306 ENST00000512785 ENST00000506564 ENST00000305138(uc003jwl.3)
    ENST00000282891 ENST00000380774 ENST00000514626 ENST00000508320 ENST00000513214


    miRNA
    Products:
         
    OriGene 3'-UTR Clone (see all 8): RAD17
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RAD17
    8/12 QIAGEN miScript miRNA Assays for microRNAs that regulate RAD17 (see all 12):
    hsa-miR-3910 hsa-miR-3200-5p hsa-miR-205 hsa-miR-4251 hsa-miR-130a* hsa-miR-23c hsa-miR-181a-2* hsa-miR-124
    SwitchGear 3'UTR luciferase reporter plasmidRAD17 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RAD17 (see all 7)
    OriGene shRNA RFP: RAD17
    OriGene siRNA: RAD17
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RAD17
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RAD17 (see all 10)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RAD17 (see all 9)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 8): RAD17 (NM_133338)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RAD17
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RAD17 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RAD17
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RAD17
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RAD17
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RAD17

    Additional cDNA sequence: 

    AF017748.1 AF076838.1 AF085736.2 AF098533.1 AF098534.1 AF112263.1 AF126424.1 AJ001642.1 
    AJ004977.1 AK292487.1 AL122068.1 BC018110.1 BC032304.1 BX537441.1 

    19 DOTS entries:

    DT.70103909  DT.100801079  DT.100038394  DT.92430414  DT.443071  DT.120842356  DT.95318963  DT.100038397 
    DT.419165  DT.120842183  DT.100795141  DT.120842298  DT.120842400  DT.95273035  DT.100703220  DT.120762147 
    DT.120842191  DT.75171598  DT.92430405 

    24/182 AceView cDNA sequences (see all 182):

    AI351438 AI367228 AI381926 BM462198 AA811328 AA678412 AI378934 CB243255 
    AJ001642 AA721033 AI824387 AL555702 CB306991 AI095669 NM_133341 AA749322 
    BI907388 BM979093 AL522325 BC018110 BM471331 NM_002873 BM995093 AJ004977 

    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for RAD17 (see all 7)    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19a · 19b ^ 20a ·
    SP1:                    -                                                                                         -                                             
    SP2:                                                                                                              -                                             
    SP3:                                            -                                                                 -                                             
    SP4:                                      -                                                                       -                                             
    SP5:                                                                                                                                                            

    ExUns: 20b
    SP1:      
    SP2:      
    SP3:      
    SP4:      
    SP5:      


    ECgene alternative splicing isoforms for RAD17

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RAD17 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GAAGAAAACA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See RAD17 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RAD17

    SOURCE GeneReport for Unigene cluster: Hs.16184

    UniProtKB/Swiss-Prot: RAD17_HUMAN, O75943
    Tissue specificity: Overexpressed in various cancer cell lines and in colon carcinoma (at protein level). Isoform 2 and
    isoform 3 are the most abundant isoforms in non irradiated cells (at protein level). Ubiquitous at low levels. Highly
    expressed in testis, where it is expressed within the germinal epithelium of the seminiferous tubuli. Weakly expressed
    in seminomas (testicular tumors)

        SABiosciences Expression via Pathway-Focused PCR Arrays including RAD17: 
              Cell Cycle in human mouse rat
              DNA Damage Signaling Pathway in human mouse rat
              Telomeres & Telomerase in human mouse rat
              Stress & Toxicity PathwayFinder in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RAD17
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RAD17
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RAD17
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RAD17
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAD17

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for RAD17 gene from 9/27 species (see all 27)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rad171 , 5 RAD17 homolog (S. pombe)1, 5 84.09(n)1
    82.03(a)1
      13 (53.23 cM)5
    193561  NM_001044371.11  NP_001037836.11 
     1006171655 
    chicken
    (Gallus gallus)
    Aves RAD171 RAD17 homolog (S. pombe) 66.17(n)
    59.52(a)
      404778  NM_213584.2  NP_998749.1 
    lizard
    (Anolis carolinensis)
    Reptilia RAD176
    --
    57(a)
    1 ↔ 1
    2(17046244-17059418)
    African clawed frog
    (Xenopus laevis)
    Amphibia AY169965.12   -- 73.69(n)    AY169965.1 
    zebrafish
    (Danio rerio)
    Actinopterygii rad171 RAD17 homolog (S. pombe) 59.56(n)
    53.83(a)
      436934  NM_001002661.1  NP_001002661.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Rad171 , 3 DNA repair3
    CG7825-PA1
    33(a)3
    43.96(n)1
    34.29(a)1
      88C103
    417791  NM_142125.31  NP_650382.31 
    worm
    (Caenorhabditis elegans)
    Secernentea hpr-176
    Homolog of S.Pombe Rad family member (hpr-17)
    23(a)
    1 ↔ 1
    II(13153391-13156977)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons ATRAD171 cell cycle checkpoint protein RAD17 44.61(n)
    32.6(a)
      836745  NM_126011.1  NP_201414.1 
    rice
    (Oryza sativa)
    Liliopsida Os03g02421001 hypothetical protein 44.88(n)
    29.48(a)
      4332216  NM_001056056.2  NP_001049521.2 


    ENSEMBL Gene Tree for RAD17 (if available)
    TreeFam Gene Tree for RAD17 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for RAD17 gene
    1 SIMAP similar gene for RAD17 using alignment to 10 protein entries:     RAD17_HUMAN (see all proteins):
    RFC4

    RAD17 for paralogs           About GeneDecksing


    2 Pseudogenes.org Pseudogenes for RAD17
    PGOHUM00000248396 PGOHUM00000250853


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/843 NCBI SNPs in RAD17 are shown (see all 843    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 5 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs68590391,2
    H--65620040(+) ATGTAC/TATACT 3 -- us2k14Minor allele frequency- T:0.00NS EA 364
    rs42522231,2
    H--65620100(-) AATGTA/GTATAG 3 -- us2k15Minor allele frequency- G:0.00NS EA 546
    rs42522221,2
    C,F,H,--65620124(-) TATCAG/AAAGGG 3 -- us2k1 tfbs3 trp37Minor allele frequency- A:0.02NS EA WA 700
    rs582283131,2
    --65620318(+) TTCAAC/TAAAAT 3 -- us2k10--------
    rs42522201,2
    C,F,H--65620760(-) TAAAAG/AGAAGG 3 -- us2k1 trp36Minor allele frequency- A:0.01NS EA 726
    rs42522191,2
    C,H,--65620821(-) GTGACG/TTGACG 3 -- us2k17Minor allele frequency- T:0.00NS EA NA 750
    rs756647011,2
    --65620947(+) ACCGGA/GAAGCA 3 -- us2k10--------
    rs37564011,2
    H--65620966(-) AATAAC/GGTAAG 3 -- us2k1 tfbs34Minor allele frequency- G:0.00NS EA 396
    rs1136111231,2
    --65621126(+) CTCAGG/ACCAAC 3 -- us2k11Minor allele frequency- A:0.50CSA 2
    rs42522181,2
    C,F,H,--65621394(-) CACGTG/AAGCGA 3 -- us2k16Minor allele frequency- A:0.01NS EA WA 692

    HapMap Linkage Disequilibrium report for RAD17 (68665120 - 68710628 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for RAD17
         1 CNV: 0283

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RAD17
    DNA2.0 Custom Variant and Variant Library Synthesis for RAD17

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    RAD17 for disorders           About GeneDecksing

    OMIM gene information: 603139    OMIM disorders: --

    14 diseases for RAD17:    About MalaCards
    nijmegen breakage syndrome    testis seminoma    ataxia telangiectasia    sporadic breast cancer
    bloom syndrome    seminoma    ataxia    breast cancer
    colon carcinoma    immunodeficiency    lung cancer    carcinoma
    hypoxia    leukemia

    7 Novoseek disease relationships for RAD17 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    ataxia telangiectasia 62.7 1 16452194 (1)
    carcinoma non-small cell lung 41.9 1 11606373 (1)
    chromosomal aberrations 22 1 12672690 (1)
    immunodeficiency 10.5 1 16968670 (1)
    cancer 2.98 2 11555598 (1)
    tumors 2.83 2 11555598 (1), 11606373 (1)
    cancer lung 0 1 11606373 (1)

    Human Genome Epidemiology (HuGE) Navigator: RAD17 (3 documents)

    Export disorders for RAD17 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RAD17 gene, integrated from 9 sources (see all 93):
    (articles sorted by number of sources associating them with RAD17)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification of a human homologue of the Schizosaccharomyces pombe rad17+ checkpoint gene. (PubMed id 9660800)1, 2, 3 Parker A.E....Luyten W.H.M.L. (1998)
    2. The human checkpoint protein hRad17 interacts with the PCNA-like proteins hRad1, hHus1, and hRad9. (PubMed id 10884395)1, 2, 9 Rauen M.... Karnitz L.M. (2000)
    3. Phosphorylation of serines 635 and 645 of human Rad17 is cell cycle regulated and is required for G(1)/S checkpoint activation in response to DNA damage. (PubMed id 11687627)1, 2, 9 Post S.M.... Lee E.Y.-H.P. (2001)
    4. Interaction between human MCM7 and Rad17 proteins is required for replication checkpoint signaling. (PubMed id 15538388)1, 2, 9 Tsao C.-C.... Abraham R.T. (2004)
    5. Genomic instability and endoreduplication triggered by RAD17 deletion. (PubMed id 12672690)1, 2, 9 Wang X.... Li L. (2003)
    6. cDNA cloning and gene mapping of human homologs for Schizosaccharomyces pombe rad17, rad1, and hus1 and cloning of homologs from mouse, Caenorhabditis elegans, and Drosophila melanogaster. (PubMed id 9878245)1, 2, 9 Dean F.B.... O'Donnell M. (1998)
    7. ATR/ATM-mediated phosphorylation of human Rad17 is required for genotoxic stress responses. (PubMed id 11418864)1, 2, 9 Bao S.... Wang X.-F. (2001)
    8. Human and mouse homologs of the Schizosaccharomyces pombe rad17+ cell cycle checkpoint control gene. (PubMed id 9933569)1, 2, 9 Bluyssen H.A.R.... de Klein A. (1999)
    9. HRad17 colocalizes with NHP2L1 in the nucleolus and redistributes after UV irradiation. (PubMed id 10593953)1, 2, 9 Chang M.-S....Chen L.B. (1999)
    10. Human and mouse RAD17 genes: identification, localization, genomic structure and histological expression pattern in normal testis and seminoma. (PubMed id 10480350)1, 2, 9 von Deimling F.... Wirth B. (1999)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 5884 HGNC: 9807 AceView: RAD17 Ensembl:ENSG00000152942 euGenes: HUgn5884
    ECgene: RAD17 H-InvDB: RAD17

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RAD17 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for RAD17 Genetics and Cytogenetics in Oncology and Haematology
    NIEHS-SNPshttp://egp.gs.washington.edu/data/rad17/

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RAD17 gene:
    Search GeneIP for patents involving RAD17

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     EMD Millipore Mono- and Polyclonal Antibodies for the study of RAD17
     Browse Small Molecules at EMD Millipore
     Browse Purified and Recombinant Proteins at EMD Millipore
     Browse for Gene Knock-down Tools from EMD Millipore
     Browse Kits and Assays available from EMD Millipore
     Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Antibodies for RAD17 (Rad17)   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Multiplex/Array Assay Kits/Reagents for RAD17 (Rad17)  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     OriGene Antibodies for RAD17   OriGene shRNA RFP for RAD17  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RAD17   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RAD17  
     OriGene Protein Over-expression Lysate for RAD17   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for RAD17   OriGene 3'-UTR Clone for RAD17  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RAD17   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RAD17  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for RAD17   OriGene Custom Protein Services for RAD17  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RAD17
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RAD17
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RAD17
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RAD17
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RAD17
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RAD17
     GenScript Custom Purified and Recombinant Proteins Services for RAD17 GenScript cDNA clones with any tag delivered in your preferred vector for RAD17
     GenScript Custom Assay Services for RAD17 GenScript Custom Superior Antibodies Services for RAD17
     GenScript Custom overexpressing Cell Line Services for RAD17 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Antibodies & Assays for RAD17 

     Regulatory tfbs in RAD17 promoter
     Search Chromatin IP Primers for RAD17
     RT2 qPCR Primer Assay in human, mouse, rat RAD17
     GNC Network for RAD17
     SABiosciences PCR Arrays including human, mouse, rat RAD17
     Search Tocris compounds for RAD17
     Browse Sino Biological Proteins and Antibodies
     cDNA Clones for RAD17
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     RAD17 antibodies
     RAD17 proteins
     RAD17 lysates
     Antibodies for RAD17
     See all of Abcam's Antibodies, Kits and Proteins for RAD17
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     RAD17 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for RAD17
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAD17
     SwitchGear 3'UTR luciferase reporter plasmids for RAD17
     SwitchGear Promoter luciferase reporter plasmids for RAD17
     ThermoFisher Antibodies for RAD17
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RAD17
           
    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      RAD17 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 100 solr: 1.4