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Aliases & Descriptions for RAD1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 3.1.11.2 3 HRAD1 1 , 2 OTTHUMP00000115992 2 REC1 1 , 2 , 3 hRAD1 3
Descriptions DNA repair exonuclease REC1 2 DNA repair exonuclease rad1 homolog 3 RAD1 (S. pombe) homolog 1 RAD1 homolog 2 RAD1 homolog (S. pombe) 2 Rad1-like DNA damage checkpoint 2 Rad1-like DNA damage checkpoint protein 3 cell cycle checkpoint protein Hrad1 2 checkpoint control protein HRAD1 2 exonuclease homolog RAD1 2
Search outside databases for aliases for RAD1 genePrevious GC identifers: GC05M034941 GC05M035934 GC05M034953
Summaries for RAD1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for RAD1 : This gene encodes a component of a heterotrimeric cell cycle checkpoint complex, known as the 9-1-1complex, that is activated to stop cell cycle progression in response to DNA damage or incompleteDNA replication. The 9-1-1 complex is recruited by RAD17 to affected sites where it may attractspecialized DNA polymerases and other DNA repair effectors. Alternatively spliced transcriptvariants of this gene have been described. [provided by RefSeq] UniProtKB/Swiss-Prot: RAD1_HUMAN, O60671 Function : Component of the 9-1-1 cell-cycle checkpoint response complex that plays a major role inDNA repair. The 9-1-1 complex is recruited to DNA lesion upon damage by the RAD17-replicationfactor C (RFC) clamp loader complex. Acts then as a sliding clamp platform on DNA for severalproteins involved in long-patch base excision repair (LP-BER). The 9-1-1 complex stimulates DNApolymerase beta (POLB) activity by increasing its affinity for the 3'-OH end of theprimer-template and stabilizes POLB to those sites where LP-BER proceeds; endonuclease FEN1cleavage activity on substrates with double, nick, or gap flaps of distinct sequences and lengths;and DNA ligase I (LIG1) on long-patch base excision repair substrates. Isoform 1 possesses 3'->5'double stranded DNA exonuclease activity
Gene Wiki entry for RAD1 (RAD1_homolog)
Genomic Location for RAD1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the RAD1 gene Entrez Gene cytogenetic band: 5p13.2 Ensembl cytogenetic band: 5p13.2 HGNC cytogenetic band: 5p13 RAD1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05M034944:
(about GC identifiers )
Start:
34,938,268 bp from pter
End:
34,954,139 bp from pter
Size:
15,872 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000005.8 NT_006576.15 Proteins for RAD1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: RAD1_HUMAN, O60671 (See
protein sequence )Recommended Name: Cell cycle checkpoint protein RAD1 Size : 282 amino acids; 31827 Da
Subunit : Component of the toroidal 9-1-1 (RAD9-RAD1-HUS1) complex, composed of RAD9A, RAD1 andHUS1. The 9-1-1 complex associates with LIG1, POLB, FEN1, RAD17, HDAC1, RPA1 and RPA2. The 9-1-1complex associates with the RAD17-RFC complex. RAD1 interacts with POLB, FEN1, HUS1, HUS1B, RAD9Aand RAD9B
Subcellular location : Nucleus
Secondary accessions : O75572 O95304 Q1W161 Q5KSM0 Q5KSM1 Q9UEP1Alternative splicing : 3 isoforms : O60671-1 O60671-2 O60671-3
REFSEQ proteins (2 alternative transcripts):
NP_002844.1 NP_596868.1 ENSEMBL proteins: ENSP00000313467 ENSP00000340879 ENSP00000231383 ENSP00000371469 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: RAD1 1 Gene Ontology (GO) cellular component term (links to tree view) :
About this table Antibodies for RAD1: Assays for RAD1:
Protein
Domains/ Families for RAD1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O60671 ProtoNet protein and cluster: O60671
2 Blocks protein families : IPB003011 Rad1 repair protein signature IPB003021 Repair protein Rad1/Rec1 family signature UniProtKB/Swiss-Prot: RAD1_HUMAN, O60671 Similarity : Belongs to the rad1 family
Gene Function for RAD1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
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Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 5 ): NR_026591 Applied Biosystems Silencer ® siRNAs for RAD1 Sigma-Aldrich siRNA and siRNA Panels for RAD1 Sigma-Aldrich shRNA for RAD1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002853                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002853                                  untagged cDNA clones in CMV expression vector (see all 6 ): BC009804  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_133377 UniProtKB/Swiss-Prot: RAD1_HUMAN, O60671 Function : Component of the 9-1-1 cell-cycle checkpoint response complex that plays a major role inDNA repair. The 9-1-1 complex is recruited to DNA lesion upon damage by the RAD17-replicationfactor C (RFC) clamp loader complex. Acts then as a sliding clamp platform on DNA for severalproteins involved in long-patch base excision repair (LP-BER). The 9-1-1 complex stimulates DNApolymerase beta (POLB) activity by increasing its affinity for the 3'-OH end of theprimer-template and stabilizes POLB to those sites where LP-BER proceeds; endonuclease FEN1cleavage activity on substrates with double, nick, or gap flaps of distinct sequences and lengths;and DNA ligase I (LIG1) on long-patch base excision repair substrates. Isoform 1 possesses 3'->5'double stranded DNA exonuclease activity Catalytic activity : Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside5'-phosphates Enzyme Number (IUBMB): EC 3.1.11.2
Genatlas biochemistry entry for RAD1 :cell cycle G2 checkpoint control gene,also involved in DNA repair,homologous to RAD17,S pombeRad1,S.cerevisiae,with two alternatively spliced isoforms (large RAD1-b and shortRAD1-c),ubiquitously expressed,may be involved in lung carcinoma 5 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for RAD1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for RAD1 5/24 Interacting proteins for RAD1 (ENSP00000340879 3 ) via UniProtKB, MINT, and/or STRING (see all 24
)About this table 5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
):
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Drugs & Compounds for RAD1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for RAD1
Transcripts for RAD1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 5 ): NR_026591 Sigma-Aldrich siRNA and siRNA Panels for RAD1 Sigma-Aldrich shRNA for RAD1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002853 NM_133377
REFSEQ mRNAs for RAD1 gene (2 alternative transcripts): NM_002853.3 NM_133377.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002853 NM_133377
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002853                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002853                                  untagged cDNA clones in CMV expression vector (see all 6 ): BC009804  
Additional cDNA sequence: AF011905.1 AF030933.1 AF058392.1 AF058393.1 AF073524.1 AF074717.1 AF076841.1 AF084512.1 AF084513.1 AF090170.1 AJ004974.1 AJ004975.1 AK002112.1 AK096960.1 AK125316.1 BC006837.1 BC009804.1 BC035771.1 BC037857.1 BT006908.1 CR610090.1
18 DOTS entries : DT.444475 DT.100024236 DT.309747 DT.97841332 DT.99972608 DT.75103106 DT.100798519 DT.100798520 DT.120802598 DT.425390 DT.100033743 DT.75114249 DT.92435047 DT.97764608 DT.100728535 DT.92044223 DT.92430524 DT.95087434
24/213 AceView cDNA sequences (see all 213
):BC037857 AI798551 D79907 AJ004974 AA525955 BQ771583 BM453151 BU682777 AF076841 CF527867 BX479175 BM875344 AJ004975 AF058393 AF090170 CR610090 BE738901 BX439078 BE379989 CD365064 N70774 AI245063 AU123712 AW779759
highest scoring ESTs for RAD1 :AF030933 AF084513 AA029300 AA029857 AA227739 AA228124 AA367814 AA379231 AA421715 AA442431
Unigene Cluster for RAD1: RAD1 homolog (S. pombe) Hs.38114 [show with all ESTs ] Unigene Representative Sequence: NM_002853 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for RAD1 ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c SP1 :       -   -                 SP2 :                         SP3 :     -   -   -   -   -             SP4 :       -   -   -               SP5 :                        
About this scheme ECgene alternative splicing isoforms for RAD1 4 Ensembl transcripts including schematic representations : ENST00000325577
ENST00000341754
ENST00000231383
ENST00000382038
Expression for RAD1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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RAD1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for RAD1 1 / 2 / 3
13 probe-sets matching RAD1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAAATAAATGSOURCE GeneReport for Unigene cluster: Hs.38114 Expression variation in blood from EXPOLDB for RAD1
UniProtKB/Swiss-Prot: RAD1_HUMAN, O60671 Tissue specificity : Expressed in testis, uterus, bladder, spleen, ovaries, lung, brain and muscle(at protein level)
Orthologs for RAD1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for RAD1 gene from 5/17 species (see all 17
)
About this table Species with no ortholog for RAD1 ENSEMBL Gene Tree for RAD1 Paralogs for RAD1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Pseudogenes 2 related pseudogenes
SNPs/Variants for RAD1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for RAD1 (up to first 250kb)
Disorders & Mutations for RAD1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 603153 Human Genome Epidemiology Navigator: RAD1 (52 documents)
Medical News for RAD1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for RAD1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/56 PubMed articles for RAD1 gene (see all 56
): A human and mouse homolog of the Schizosaccharomyces pombe rad1+ cell cycle checkpoint control gene. (PubMed id 9828137) 1, 2, 3, 4 Bluyssen H.A....de Klein A. (1998) Human and mouse homologs of Schizosaccharomyces pombe rad1(+) and Saccharomyces cerevisiae RAD17: linkage to checkpoint control and mammalian meiosis. (PubMed id 9716408) 1, 2, 3, 4 Freire R....Jackson S.P. (1998) The human checkpoint protein hRad17 interacts with the PCNA-like proteins hRad1, hHus1, and hRad9. (PubMed id 10884395) 1, 3, 4 Rauen M.... Karnitz L.M. (2000) cDNA cloning and gene mapping of human homologs for Schizosaccharomyces pombe rad17, rad1, and hus1 and cloning of homologs from mouse, Caenorhabditis elegans, and Drosophila melanogaster. (PubMed id 9878245) 1, 3, 4 Dean F.B.... O'Donnell M. (1998) The human G2 checkpoint control protein hRAD9 is a nuclear phosphoprotein that forms complexes with hRAD1 and hHUS1. (PubMed id 10359610) 1, 3, 4 St Onge R.P.... Davey S. (1999) RAD1, a human structural homolog of the Schizosaccharomyces pombe RAD1 cell cycle checkpoint gene. (PubMed id 9828139) 1, 3, 4 Marathi U.K.... Legerski R.J. (1998) A human homologue of the Schizosaccharomyces pombe rad1+ checkpoint gene encodes an exonuclease. (PubMed id 9660799) 1, 3, 4 Parker A.E.... Luyten W.H.M.L. (1998) Interaction and colocalization of Rad9/Rad1/Hus1 checkpoint complex with replication protein A in human cells. (PubMed id 15897895) 1, 3, 4 Wu X.... Zou Y. (2005) The human Rad9/Rad1/Hus1 damage sensor clamp interacts with DNA polymerase beta and increases its DNA substrate utilisation efficiency: implications for DNA repair. (PubMed id 15314187) 1, 3, 4 Toueille M....Huebscher U. (2004) Expression of mammalian paralogues of HRAD9 and Mrad9 checkpoint control genes in normal and cancerous testicular tissue. (PubMed id 14500360) 1, 3, 4 Hopkins K.M....Lieberman H.B. (2003)
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Genome Databases showing RAD1
(According to
Entrez Gene ,
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AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Specialized Databases showing RAD1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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