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Aliases for RACGAP1P Gene

Aliases for RACGAP1P Gene

  • Rac GTPase Activating Protein 1 Pseudogene 2 3
  • RP11-478B9.3 5
  • FKSG42 3

External Ids for RACGAP1P Gene

Previous GeneCards Identifiers for RACGAP1P Gene

  • GC12M043743
  • GC12M045456
  • GC12M042484

Summaries for RACGAP1P Gene

GeneCards Summary for RACGAP1P Gene

RACGAP1P (Rac GTPase Activating Protein 1 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RACGAP1P Gene

Genomics for RACGAP1P Gene

Regulatory Elements for RACGAP1P Gene

Enhancers for RACGAP1P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F045983 1.6 FANTOM5 ENCODE 16.2 -922.7 -922742 9.8 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 KNOP1P2 RPL13AP21 RACGAP1P SCAF11 LOC102723757 SLC38A4 SLC38A2 GC12P045991 GC12M045894
GH12F045615 1.2 Ensembl ENCODE 16.2 -550.2 -550231 0.7 PKNOX1 INSM2 KLF17 FEZF1 ZNF2 ZEB1 ZNF302 ZNF366 FOS ZNF263 RPL13AP21 RACGAP1P ENSG00000257657 GC12P045658
GH12F045214 1.1 ENCODE 16.2 -152.6 -152637 7.1 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF302 ZNF263 RACGAP1P RPL13AP21 PLEKHA8P1 ENSG00000278351
GH12F044874 1 ENCODE 16.2 +189.4 189414 2.4 PKNOX1 SIN3A FEZF1 ZNF2 GLIS2 KLF7 DEK ZNF263 SP3 JUNB NELL2 RACGAP1P DBX2 ENSG00000201788 GC12M044881 GC12M044853
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RACGAP1P on UCSC Golden Path with GeneCards custom track

Genomic Location for RACGAP1P Gene

Chromosome:
12
Start:
45,062,618 bp from pter
End:
45,065,411 bp from pter
Size:
2,794 bases
Orientation:
Minus strand

Genomic View for RACGAP1P Gene

Genes around RACGAP1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RACGAP1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RACGAP1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RACGAP1P Gene

Proteins for RACGAP1P Gene

Post-translational modifications for RACGAP1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RACGAP1P Gene

Domains & Families for RACGAP1P Gene

Suggested Antigen Peptide Sequences for RACGAP1P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RACGAP1P Gene

Function for RACGAP1P Gene

Phenotypes for RACGAP1P Gene

GenomeRNAi human phenotypes for RACGAP1P:
genes like me logo Genes that share phenotypes with RACGAP1P: view

Animal Model Products

miRNA for RACGAP1P Gene

miRTarBase miRNAs that target RACGAP1P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RACGAP1P Gene

Localization for RACGAP1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RACGAP1P Gene

Pathways & Interactions for RACGAP1P Gene

SuperPathways for RACGAP1P Gene

No Data Available

Interacting Proteins for RACGAP1P Gene

Gene Ontology (GO) - Biological Process for RACGAP1P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RACGAP1P Gene

Transcripts for RACGAP1P Gene

mRNA/cDNA for RACGAP1P Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RACGAP1P Gene

No ASD Table

Relevant External Links for RACGAP1P Gene

GeneLoc Exon Structure for
RACGAP1P
ECgene alternative splicing isoforms for
RACGAP1P

Expression for RACGAP1P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RACGAP1P Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RACGAP1P Gene



NURSA nuclear receptor signaling pathways regulating expression of RACGAP1P Gene:

RACGAP1P

SOURCE GeneReport for Unigene cluster for RACGAP1P Gene:

Hs.650500
genes like me logo Genes that share expression patterns with RACGAP1P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RACGAP1P Gene

Orthologs for RACGAP1P Gene

Evolution for RACGAP1P Gene

ENSEMBL:
Gene Tree for RACGAP1P (if available)
TreeFam:
Gene Tree for RACGAP1P (if available)

No data available for Orthologs for RACGAP1P Gene

Paralogs for RACGAP1P Gene

No data available for Paralogs for RACGAP1P Gene

Variants for RACGAP1P Gene

Sequence variations from dbSNP and Humsavar for RACGAP1P Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10880736 -- 45,062,197(+) CGGCT(A/G)TAAAG downstream-variant-500B
rs10880737 -- 45,062,269(+) GGTTG(A/G)GAAGG downstream-variant-500B
rs111452748 -- 45,065,369(+) GCCTG(G/T)CCTCA nc-transcript-variant
rs111742883 -- 45,064,394(+) CGAGA(C/G)ATCAC nc-transcript-variant
rs113715621 -- 45,064,678(+) CCGCC(A/G)TCCTT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RACGAP1P Gene

Variant ID Type Subtype PubMed ID
nsv1051285 CNV loss 25217958

Relevant External Links for RACGAP1P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RACGAP1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RACGAP1P Gene

Disorders for RACGAP1P Gene

Relevant External Links for RACGAP1P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RACGAP1P

No disorders were found for RACGAP1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RACGAP1P Gene

Publications for RACGAP1P Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RACGAP1P Gene

Sources for RACGAP1P Gene

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