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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

RACGAP1 Gene

protein-coding GIFtS: 64
GCID: GC12M050370

Rac GTPase activating protein 1

Explore 2 diseases affiliated with
RACGAP1 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Rac GTPase Activating Protein 1¹ ²		GTPase Activating Protein²
MgcRacGAP¹ ² ³		Protein CYK4 Homolg²
Male Germ Cell RacGap² ³		Rac GTPase-Activating Protein 1²
CYK4² ³		KIAA1478³
HsCYK-4² ³		MGCRACGAP³
ID-GAP²		Protein CYK4 Homolog³

External Ids:	HGNC: 9804¹	Entrez Gene: 29127²	Ensembl: ENSG00000161800⁷	OMIM: 604980⁵	UniProtKB: Q9H0H5³

Export aliases for RACGAP1 gene to outside databases

Previous GC identifers: GC12M050677 GC12M050438 GC12M050099 GC12M048669

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RACGAP1:

The protein encoded by this gene belongs to the GTPase-activating protein (GAP) family. GAPs bind activated forms of

Rho GTPases and stimulate GTP hydrolysis. Through this catalytic function, GAPs negatively regulate Rho-mediated

signals. This protein plays a regulatory role in initiation of cytokinesis, controlling cell growth and

differentiation of hematopoietic cells, regulating spermatogenesis, and in neuronal proliferation. Alternatively

spliced transcript variants have been found for this gene. (provided by RefSeq, Sep 2011)

UniProtKB/Swiss-Prot: RGAP1_HUMAN, Q9H0H5

Function: Component of the centralspindlin complex that serves as a microtubule-dependent and Rho-mediated signaling

required for the myosin contractile ring formation during the cell cycle cytokinesis. Plays key roles in controlling

cell growth and differentiation of hematopoietic cells through mechanisms other than regulating Rac GTPase activity.

Also involved in the regulation of growth-related processes in adipocytes and myoblasts. May be involved in regulating

spermatogenesis and in the RACGAP1 pathway in neuronal proliferation. Shows strong GAP (GTPase activation) activity

towards CDC42 and RAC1 and less towards RHOA. Essential for the early stages of embryogenesis. May play a role in

regulating cortical activity through RHOA during cytokinesis. May participate in the regulation of sulfate transport

in male germ cells

Gene Wiki entry for RACGAP1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000012.11 NC_018923.1 NT_029419.12

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the RACGAP1 gene promoter:
TBP SRY FOXO4 FOXD3 FOXO1a STAT3 AP-4 GATA-1 FOXO1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: RACGAP1 promoter sequence

Search SABiosciences Chromatin IP Primers for RACGAP1

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RACGAP1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q13.12 Ensembl cytogenetic band: 12q13.12 HGNC cytogenetic band: 12q13

RACGAP1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RACGAP1 gene location

GeneLoc information about chromosome 12 GeneLoc Exon Structure

GeneLoc location for GC12M050370: view genomic region (about GC identifiers)

Start:	50,370,706 bp from pter	End:	50,426,919 bp from pter
Size:	56,214 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RGAP1_HUMAN, Q9H0H5 (See protein sequence)

Recommended Name: Rac GTPase-activating protein 1

Size: 632 amino acids; 71027 Da

Subunit: Heterotetramer of two molecules each of RACGAP1 and KIF23. Found in the centralspindlin complex composed of

RACGAP1 and KIF23. Associates with alpha-, beta- and gamma-tubulin and microtubules. Interacts via its Rho-GAP domain

with RND2. Associates with AURKB during M phase. Interacts via its Rho-GAP domain and basic region with PRC1. The

interaction with PRC1 inhibits its GAP activity towards CDC42 in vitro, which may be required for maintaining normal

spindle morphology. Interacts with SLC26A8 via its N-terminus. Interacts with RAB11FIP3. Interacts with ECT2; the

interaction is direct, occurs at anaphase and during cytokinesis in a microtubule-dependent manner and is enhanced by

phosphorylation by PLK1. Interacts with KIF23; the interaction is direct

Subcellular location: Nucleus. Cytoplasm. Cytoplasm, cytoskeleton, spindle. Cytoplasmic vesicle, secretory vesicle,

acrosome. Cleavage furrow. Midbody. Note=Colocalizes with RND2 in Golgi-derived proacrosomal vesicles and the acrosome

(By similarity). During interphase, localized to the nucleus and cytoplasm along with microtubules, in anaphase, is

redistributed to the central spindle and, in telophase and cytokinesis, to the midbody. Colocalizes with RHOA at the

myosin contractile ring during cytokinesis. Colocalizes with ECT2 to the mitotic spindles during anaphase/metaphase,

the cleavage furrow during telophase and at the midbody at the end of cytokinesis. Colocalizes with Cdc42 to spindle

microtubules from prometaphase to telophase

Sequence caution: Sequence=AAH24144.1; Type=Frameshift; Positions=171, 205, 437;

2 PDB 3D structures from and Proteopedia for RACGAP1:

2OVJ (3D)

4B6D (3D)

Secondary accessions: Q6PJ26 Q9NWN2 Q9P250 Q9P2W2

Explore the universe of human proteins at neXtProt for RACGAP1: NX_Q9H0H5

Post-translational modifications:

Phosphorylated at multiple sites in the midbody during cytokinesis. Phosphorylation by AURKB on Ser-387 at the midbody

is, at least in part, responsible for exerting its latent GAP activity towards RhoA. Phosphorylation on multiple

serine residues by PLK1 enhances its association with ECT2 and is critical for cleavage furrow formation¹

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q9H0H5

RACGAP1 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (3 alternative transcripts):

NP_001119575.1 NP_001119576.1 NP_037409.2

ENSEMBL proteins:

ENSP00000446889 ENSP00000404190 ENSP00000309871 ENSP00000404808 ENSP00000449374

ENSP00000449370 ENSP00000449565 ENSP00000448507 ENSP00000449574 ENSP00000448697

ENSP00000446642 ENSP00000447429 ENSP00000449963 ENSP00000450064 ENSP00000449170

ENSP00000448860 ENSP00000449620 ENSP00000449669 ENSP00000447393 ENSP00000448968

ENSP00000450074 ENSP00000447177 ENSP00000449186 ENSP00000448707 ENSP00000449959

ENSP00000448136 ENSP00000413241

Reactome Protein details: Q9H0H5
Human Recombinant Protein Products:

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	Novus Biologicals RACGAP1 Protein Novus Biologicals RACGAP1 Lysates
	Browse Sino Biological Recombinant Proteins
	Browse ProSpec Recombinant Proteins
	Uscn Proteins for RACGAP1

Gene Ontology (GO): 5/10 cellular component terms (GO ID links to tree view) (see all 10): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001669	acrosomal vesicle	IEA	--
GO:0005622	intracellular	--	--
GO:0005634	nucleus	IDA	--
GO:0005829	cytosol	TAS	--
GO:0005874	microtubule	IEA	--

RACGAP1 for ontologies About GeneDecksing

RACGAP1 Antibody Products:

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	ThermoFisher Antibody for RACGAP1

Assay Products for RACGAP1:

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	Uscn ELISAs and CLIAs for RACGAP1

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

RACGAP1 for domains About GeneDecksing

3 InterPro domains/families:

IPR008936 Rho_GTPase_activation_prot

IPR002219 Prot_Kinase_C-like_PE/DAG-bd

IPR000198 RhoGAP_dom

Graphical View of Domain Structure for InterPro Entry Q9H0H5

ProtoNet protein and cluster: Q9H0H5

1 Blocks protein family: IPB000198 RhoGAP domain

UniProtKB/Swiss-Prot: RGAP1_HUMAN, Q9H0H5

Domain: The coiled coil region is indispensible for localization to the midbody during cytokinesis

Similarity: Contains 1 phorbol-ester/DAG-type zinc finger

Similarity: Contains 1 Rho-GAP domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: RGAP1_HUMAN, Q9H0H5

Function: Component of the centralspindlin complex that serves as a microtubule-dependent and Rho-mediated signaling

required for the myosin contractile ring formation during the cell cycle cytokinesis. Plays key roles in controlling

cell growth and differentiation of hematopoietic cells through mechanisms other than regulating Rac GTPase activity.

Also involved in the regulation of growth-related processes in adipocytes and myoblasts. May be involved in regulating

spermatogenesis and in the RACGAP1 pathway in neuronal proliferation. Shows strong GAP (GTPase activation) activity

towards CDC42 and RAC1 and less towards RHOA. Essential for the early stages of embryogenesis. May play a role in

regulating cortical activity through RHOA during cytokinesis. May participate in the regulation of sulfate transport

in male germ cells

Induction: Expression is down-regulated during macrophage differention of HL-60 cells

miRNA Products:		miRTarBase miRNAs that target RACGAP1: hsa-mir-192 (MIRT004859)

		OriGene 3'-UTR Clone (see all 3): RACGAP1 Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RACGAP1
		8/41 QIAGEN miScript miRNA Assays for microRNAs that regulate RACGAP1 (see all 41):
		hsa-miR-576-3p hsa-miR-4254 hsa-miR-24-1* hsa-miR-106a hsa-miR-1224-3p hsa-miR-1260b hsa-miR-301a hsa-miR-519a

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Gene Editing
Products:

DNA2.0 Custom Protein Engineering Service for RACGAP1

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In Situ Assay
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RACGAP1

Gene Ontology (GO): 5/8 molecular function terms (GO ID links to tree view) (see all 8): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005096	GTPase activator activity	IMP	15642749
GO:0005515	protein binding	IPI	11278976
GO:0008017	microtubule binding	IDA	11782313
GO:0019901	protein kinase binding	IPI	19468302
GO:0043014	alpha-tubulin binding	IDA	11085985

RACGAP1 for ontologies About GeneDecksing

7 GenomeRNAi human phenotypes for RACGAP1:

Cell division defect	Decreased cell number, increas	Decreased influenza A H1N1 (A/	Decreased influenza A/WSN/33 r
Decreased viability of wild-ty	Increased cell number in G2M,	Increased cilium length after

Animal Models:
5 MGI mutant phenotypes (inferred from 2 alleles) (MGI details for Racgap1):

cellular

embryogenesis

hematopoietic system

immune system

mortality/aging

RACGAP1 for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/15 super-pathways (see all 15) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

G-protein signaling Regulation of RAC1 activity

	G-protein signaling Regulation of RAC1 activity	1.00			G-protein signaling_Rac2 regulation pathway	0.16
	G-protein signaling_Regulation of RAC1 activity	0.88			G-protein signaling Rac2 regulation pathway	0.16

Immune System

Immune System

1.00

Adaptive Immune System

0.59

Kinesins

Kinesins

1.00

Kinesins move along microtubules consuming ATP

0.95

MHC class II antigen presentation

MHC class II antigen presentation

1.00

Transport of antigen loaded MHC II molecules to surface

0.59

Cell death signalling via NRAGE, NRIF and NADE

Rho GTPase cycle

0.25

Signaling by Rho GTPases

0.25

Pathway sources
See GeneCards unified pathways
Show all pathways

2 EMD Millipore Pathways for RACGAP1

	G-protein signaling Rac2 regulation pathway
	G-protein signaling Regulation of RAC1 activity

1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for RACGAP1

Rac1 Pathway

2 GeneGo (Thomson Reuters) Pathways for RACGAP1

	G-protein signaling Regulation of RAC1 activity
	G-protein signaling Rac2 regulation pathway

5/6 BioSystems Pathways for RACGAP1 (see all 6)

	Signal Transduction of S1P Receptor
	Wnt Signaling Pathway and Pluripotency
	Aurora B signaling
	Regulation of CDC42 activity
	RAC1 signaling pathway

5/11 Reactome Pathways for RACGAP1 (see all 11)

	Hemostasis
	Signaling by Rho GTPases
	Adaptive Immune System
	Rho GTPase cycle
	Transport of antigen loaded MHC II molecules to surface

RACGAP1 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for RACGAP1

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/808 Interacting proteins for RACGAP1 (Q9H0H5^{1, 2, 3} ENSP00000309871⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 808)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
PPP2R5E	Q16537²^,³, ENSP00000337641⁴	MINT-6166710 MINT-6166735 MINT-6166596 MINT-6166691 MINT-6166659 MINT-6166727 I2D: score=2 STRING: ENSP00000337641
KIF23	Q02241²^,³, ENSP00000260363⁴	MINT-6799707 MINT-8397862 MINT-8400617 MINT-6166596 MINT-8397624 MINT-8397899 I2D: score=1 STRING: ENSP00000260363
PPP2CA	P67775²^,³, ENSP00000418447⁴	MINT-6166596 MINT-6166653 I2D: score=2 STRING: ENSP00000418447
TUBA4A	P68366²^,³, ENSP00000248437⁴	MINT-7945693 MINT-7947479 I2D: score=1 STRING: ENSP00000248437
YWHAB	P31946²^,³, ENSP00000300161⁴	MINT-50978 I2D: score=4 STRING: ENSP00000300161

About this table

Gene Ontology (GO): 5/18 biological process terms (GO ID links to tree view) (see all 18): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000910	cytokinesis	IDA	19468302
GO:0000915	cytokinesis, actomyosin contractile ring assembly	IMP	16129829
GO:0007018	microtubule-based movement	TAS	--
GO:0007108	cytokinesis, initiation of separation	IMP	16129829
GO:0007165	signal transduction	--	--

RACGAP1 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

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Browse Tocris compounds for RACGAP1

10/843 HMDB Compounds for RACGAP1 (see all 843) About this table

Compound	Synonyms	CAS #	PubMed Ids
DG(14:0/14:0/0:0)	DAG(14:0/14:0) (see all 9)	--	--
DG(14:0/14:1(9Z)/0:0)	DAG(14:0/14:1) (see all 15)	--	--
DG(14:0/15:0/0:0)	Diacylglycerol(29:0) (see all 9)	--	--
DG(14:0/16:0/0:0)	DAG(30:0) (see all 9)	--	--
DG(14:0/16:1(9Z)/0:0)	DG(30:1) (see all 15)	--	--
DG(14:0/18:0/0:0)	DG(14:0/18:0) (see all 9)	--	--
DG(14:0/18:1(11Z)/0:0)	Diacylglycerol (see all 15)	--	--
DG(14:0/18:1(9Z)/0:0)	1-myristoyl-2-oleoyl-sn-glycerol (see all 15)	--	--
DG(14:0/18:2(9Z,12Z)/0:0)	DAG(14:0/18:2n6) (see all 15)	--	--
DG(14:0/18:3(6Z,9Z,12Z)/0:0)	Diacylglycerol(14:0/18:3n6) (see all 16)	--	--

Search CenterWatch for drugs/clinical trials and news about RACGAP1 / RGAP1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for RACGAP1 gene (3 alternative transcripts):

NM_001126103.1 NM_001126104.1 NM_013277.3

Unigene Cluster for RACGAP1:

Rac GTPase activating protein 1

Hs.505469 [show with all ESTs]

Unigene Representative Sequence: NM_001126103

18/29 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 29):

ENST00000548961 ENST00000427314 ENST00000312377 ENST00000454520 ENST00000551016

ENST00000547905 ENST00000549342 ENST00000547061 ENST00000548320 ENST00000548598

ENST00000552310 ENST00000548158 ENST00000550149 ENST00000546786 ENST00000546595

ENST00000551145 ENST00000548824 ENST00000551260

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		hsa-miR-576-3p hsa-miR-4254 hsa-miR-24-1* hsa-miR-106a hsa-miR-1224-3p hsa-miR-1260b hsa-miR-301a hsa-miR-519a

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Additional cDNA sequence:

AB030251.1 AB040911.1 AK000733.1 AK022726.1 AK225901.1 AK315785.1 AL136794.1 BC024144.2

BC032754.1 CR533565.1

13 DOTS entries:

DT.445826 DT.100797704 DT.100797709 DT.100797710 DT.95319330 DT.100797706 DT.102830933 DT.100036361

DT.100728933 DT.121129817 DT.121129861 DT.100036360 DT.91997253

24/236 AceView cDNA sequences (see all 236):

AI697315 CB141439 BU167875 BQ057132 BQ228488 BM909314 AI034117 AL713621

BQ217059 BG258163 BI092422 BM557222 AA398402 BM800554 BE727128 AA315466

AI092175 BG168731 BP365076 AI128204 BX367703 BP365058 BG820884 BM455516

GeneLoc Exon Structure

5/19 Alternative Splicing Database (ASD) splice patterns (SP) for RACGAP1 (see all 19) About this scheme

ExUns:	1a	·	1b	·	1c	·	1d	^	2a	·	2b	·	2c	^	3a	·	3b	^	4	^	5	^	6	^	7	^	8a	·	8b	^	9a	·	9b	·	9c	·	9d	^	10	^	11	^	12	^	13	^	14	^	15	^	16	^
SP1:															-		-		-		-		-
SP2:																			-		-		-
SP3:																	-		-		-		-
SP4:															-		-		-		-
SP5:															-		-		-		-		-

ExUns:	17	^	18	^	19	^	20	^	21	^	22
SP1:
SP2:
SP3:
SP4:
SP5:

ECgene alternative splicing isoforms for RACGAP1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

RACGAP1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GAACATAGCC

About this image

RACGAP1 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Neural Tube

Mesencephalic Ventricular Zone

Neural Tube

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

PureStem™ progenitor F15 (Embryonic Progenitor Cell)

See RACGAP1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for RACGAP1

SOURCE GeneReport for Unigene cluster: Hs.505469

UniProtKB/Swiss-Prot: RGAP1_HUMAN, Q9H0H5

Tissue specificity: Highly expressed in testis, thymus and placenta. Expressed at lower levels in spleen and peripheral

blood lymphocytes. In testis, expression is restricted to germ cells with the highest levels of expression found in

spermatocytes. Expression is regulated in a cell cycle-dependent manner and peaks during G2/M phase

SABiosciences Expression via Pathway-Focused PCR Array including RACGAP1:

Cytoskeleton Regulators in human mouse rat

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for RACGAP1 gene from 6/23 species (see all 23) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	RACGAP1¹	Rac GTPase activating protein 1	74.92(n) 79.04(a)		426884 XM_424490.3 XP_424490.3
lizard (Anolis carolinensis)	Reptilia	RACGAP1⁶	--	81(a)	1 ↔ 1	2(92175929-92205951)
African clawed frog (Xenopus laevis)	Amphibia	MGC53048²	similar to Rac GTPase activating protein 1	74.52(n)		BC046676.1
zebrafish (Danio rerio)	Actinopterygii	wufb92c08²	wufb92c08	74.28(n)		323197 BC063983.1
fruit fly (Drosophila melanogaster)	Insecta	RacGAP84C³ tum¹	limb morphogenesis RAS GTPase activator³ tumbleweed¹	41(a) (best of 2)³ 46.95(n)¹ 38.37(a)¹		84D3³ 36538¹ NM_137068.3¹ NP_610912.2¹
worm (Caenorhabditis elegans)	Secernentea	cyk-4^{1 , 3}	Phorbol esters/diacylglycerol binding domain (C1 more³ Protein CYK-4¹	32(a)³ 41.71(n)¹ 30.09(a)¹		III(13840084-13842506)³ 176815¹ NM_067444.5¹ NP_499845.1¹

ENSEMBL Gene Tree for RACGAP1 (if available)
TreeFam Gene Tree for RACGAP1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for RACGAP1 gene

SYDE2² ABR² SYDE1² BCR²

3 SIMAP similar genes for RACGAP1 using alignment to 22 protein entries: RGAP1_HUMAN (see all proteins):

FKSG42 ARHGAP12 ARHGAP9

RACGAP1 for paralogs About GeneDecksing

3 Pseudogenes.org Pseudogenes for RACGAP1
PGOHUM00000239430 PGOHUM00000247791 PGOHUM00000246146

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 12 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs150539167^1,2		--	50382515(+)	`ACTCCC/TGGTGG`	3	--	ds500¹		0	--	--	--	--
rs139498343^1,2		--	50382594(+)	`GAAGTA/GATTTT`	3	--	ds500¹		0	--	--	--	--
rs143191075^1,2		--	50382753(+)	`ACCACA/GCCCAG`	3	--	ds500¹		0	--	--	--	--
rs114026250^1,2	F,	--	50383028(+)	`GTCAAA/CCATTC`	3	--	ut3¹		1		WA	118
rs146176493^1,2		--	50383120(+)	`TTCCAC/TGGGAA`	3	--	ut3¹		0	--	--	--	--
rs8987^1,2	C	--	50383150(+)	`GCAAAG/AAAAAA`	3	--	ut3¹		1		NA	2
rs190356225^1,2		--	50383175(+)	`TCTTAC/TCACAA`	3	--	ut3¹		0	--	--	--	--
rs139446944^1,2		--	50383286(+)	`TGGGGG/TTATGG`	3	--	ut3¹		0	--	--	--	--
rs181679111^1,2		--	50383287(+)	`GGGGGA/TATGGG`	3	--	ut3¹		0	--	--	--	--
rs7485921^1,2	C	--	50383327(+)	`AAAGAA/CAAACT`	3	--	ut3¹ trp³		0	--	--	--	--

HapMap Linkage Disequilibrium report for RACGAP1 (50370706 - 50426919 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for RACGAP1: --

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

RACGAP1 for disorders           About GeneDecksing

OMIM gene information: 604980    OMIM disorders: --

2 diseases for RACGAP1:    About MalaCards

neuronitis breast cancer

Human Genome Epidemiology (HuGE) Navigator: RACGAP1 (3 documents)

Export disorders for RACGAP1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for RACGAP1 gene, integrated from 9 sources (see all 81):
(articles sorted by number of sources associating them with RACGAP1)

Utopia: connect your pdf to the dynamic
world of online information

MgcRacGAP, a new human GTPase-activating protein for Rac and Cdc42 similar to Drosophila rotundRacGAP gene product, is expressed in male germ cells. (PubMed id 9497316)^{1, 2, 3, 9} Toure A....Gacon G. (1998)
Rho family GTPase Rnd2 interacts and co-localizes with MgcRacGAP in male germ cells. (PubMed id 12590651)^{1, 2, 9} Naud N.... Gacon G. (2003)
MgcRacGAP controls the assembly of the contractile ring and the initiation of cytokinesis. (PubMed id 16129829)^{1, 2, 9} Zhao W.-M. and Fang G. (2005)
Plk1 self-organization and priming phosphorylation of HsCYK-4 at the spindle midzone regulate the onset of division in human cells. (PubMed id 19468302)^{1, 2, 9} Burkard M.E....Jallepalli P.V. (2009)
Human mitotic spindle-associated protein PRC1 inhibits MgcRacGAP activity toward Cdc42 during the metaphase. (PubMed id 14744859)^{1, 2, 9} Ban R.... Tanaka H. (2004)
Sequential Cyk-4 binding to ECT2 and FIP3 regulates cleavage furrow ingression and abscission during cytokinesis. (PubMed id 18511905)^{1, 2} Simon G.C....Prekeris R. (2008)
A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243)^{1, 2} Beausoleil S.A.... Gygi S.P. (2006)
Dissecting the role of Rho-mediated signaling in contractile ring formation. (PubMed id 16236794)^{1, 2} Kamijo K....Miki T. (2006)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)^{1, 2} Olsen J.V....Mann M. (2006)
Ect2 and MgcRacGAP regulate the activation and function of Cdc42 in mitosis. (PubMed id 15642749)^{1, 2} Oceguera-Yanez F....Narumiya S. (2005)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 29127	HGNC: 9804	AceView: RACGAP1	Ensembl:ENSG00000161800	euGenes: HUgn29127
ECgene: RACGAP1	H-InvDB: RACGAP1

(According to HUGE)
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HUGE: KIAA1478

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for RACGAP1	Pharmacogenomics, SNPs, Pathways

Intellectual Property for RACGAP1 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for RACGAP1 gene:
Search GeneIP for patents involving RACGAP1

GeneCards and IP:
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RACGAP1 Gene

Rac GTPase activating protein 1

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RACGAP1 Gene

Rac GTPase activating protein 1

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