RAC1 Gene
protein-coding GIFtS : 71
GCID: GC07 P006380
ras-related C3 botulinum toxin substrate 1 (rho family,...
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Aliasesfor RAC1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Ras-Related C3 Botulinum Toxin Substrate 1 (Rho Family, Small GTP BindingProtein Rac1) 1 2 Cell Migration-Inducing Gene 5 Protein2 3 P21-Rac11 Ras-Like Protein TC252 3 Rac-11 2 Ras-Related C3 Botulinum Toxin Substrate 12 TC-251 2 TC253
Export aliases for RAC1 gene to outside databases Previous GC identifers: GC07P006058 GC07P006159 GC07P006160 GC07P006187
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Summariesfor RAC1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for RAC1 : The protein encoded by this gene is a GTPase which belongs to the RAS superfamily of small GTP-binding proteins. Members of this superfamily appear to regulate a diverse array of cellular events, including the control of cell growth, cytoskeletal reorganization, and the activation of protein kinases. Two transcript variants encoding different isoforms have been found for this gene. (provided by RefSeq, Mar 2009) UniProtKB/Swiss-Prot: RAC1_HUMAN, P63000 Function : Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states.In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages (By similarity). Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. In glioma cells, promotes cell migration and invasion Function : Isoform B has an accelerated GEF-independent GDP/GTP exchange and an impaired GTP hydrolysis, which isrestored partially by GTPase-activating proteins. It is able to bind to the GTPase-binding domain of PAK but not full-length PAK in a GTP-dependent manner, suggesting that the insertion does not completely abolish effector interaction summary
for RAC1 : Small G proteins (small GTPases) are homologous to Galpha proteins and are often referred to as the Rasproto-oncogene superfamily. The Ras superfamily contains over 100 small GTPases grouped into eight families;Ras, Rho, Rab, Rap, Arf, Ran, Rheb and Rad. Small GTPases regulate a wide variety of processes in the cell,including growth, differentiation, movement and lipid vesicle transport. Like Galpha proteins, small GTPasesalternate between an 'on' state (bound to GTP) and an 'off' state (bound to GDP). This cyclic processrequires guanine nucleotide exchange factor (GEF) and GTPase-activating protein (GAP). Small GTPases are thedownstream effectors of most receptor tyrosine kinases (RTKs) and are linked via two proteins, GRB2 and SOS.They are coupled to intracellular signaling cascades including the MAPK pathway, through interactions withRaf kinase. Normally, activation of small GTPases is induced by ligand binding to a RTK. In many transformedcells activating mutations of GTPases, often Ras, produce a cellular response in the absence of a ligand,thus promoting malignant progression. Gene Wiki entry for RAC1
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Genomic Viewsfor RAC1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000007.13 NC_018918.1 NT_007819.17 NT_079592.2 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the RAC1 gene promoter: AP-1 SRF (504 AA) STAT5A YY1 Other transcription factors Search SABiosciences Chromatin IP Primers for RAC1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RAC1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 7p22 Ensembl cytogenetic band: 7p22.1 HGNC cytogenetic band: 7p22 RAC1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07P006380: view genomic region
(about GC identifiers )
Start:
6,414,126 bp from pter
End:
6,443,608 bp from pter
Size:
29,483 bases
Orientation:
plus strand
1 alternative location : Chr 7+,CRA_TCAG 6,460,486-6,489,951
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Proteinsfor RAC1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: RAC1_HUMAN, P63000 (See
protein sequence )Recommended Name: Ras-related C3 botulinum toxin substrate 1 precursor Size : 192 amino acids; 21450 Da
Subunit : Interacts with NISCH. Interacts with PIP5K1A. Interacts with the GTP-bound form of RAB7A. Interacts withSRGAP2. Interacts with CYFIP1/SRA-1. Interacts with PLXNB3. Interacts with ARHGDIA; the interaction is induced by SEMA5A and mediated through PLXNB3 (By similarity). Interacts (GTP-bound form preferentially) with PKN2 (via the REM repeats); the interaction stimulates autophosphorylation and phosphorylation of PKN2. Interacts with the GEF proteins PREX1, RASGRF2, DOCK1, DOCK2 and DOCK7, which promote the exchange between GDP and GTP, and therefore activate it. Interacts with PARD6A, PARD6B and PARD6G in a GTP-dependent manner. Part of a quaternary complex containing PARD3, some PARD6 protein (PARD6A, PARD6B or PARD6G) and some atypical PKC protein (PRKCI or PRKCZ), which plays a central role in epithelial cell polarization. Found in a trimeric complex composed of DOCK1 and ELMO1, which plays a central role in phagocytosis of apoptotic cells. Interacts with RALBP1 via its effector domain. Interacts with PLXNB1. Probably found in a ternary complex composed of DSCAM, PAK1 and RAC1. Interacts with DSCAM; the interaction requires PAK1. Part of a complex with MAP2K3, MAP3K3, CCM2 and DEF6. Interacts with BAIAP2, BAIAP2L1 and DEF6. Interacts with Y.pseudotuberculosis YPKA and PLCB2. Interacts with NOXA1. Interacts with ARHGEF2. Interacts with TBC1D2. Interacts with UNKL. Interacts with USP6. Interacts with SPATA13. Interacts with ARHGEF16; mediates activation of RAC1 by EPHA2. Interacts with ITGB4. Interacts with S100A8 and calprotectin (S100A8/9)
Subcellular location : Cell membrane; Lipid-anchor; Cytoplasmic side (By similarity). Melanosome. Cytoplasm (Bysimilarity). Note=Inner surface of plasma membrane possibly with attachment requiring prenylation of the C-terminal cysteine (By similarity). Identified by mass spectrometry in melanosome fractions from stage I to stage IV. Found in the ruffled border (a late endosomal-like compartment in the plasma membrane) of bone-resorbing osteoclasts (By similarity)
Sequence caution : Sequence=AAZ80485.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
6/31 PDB 3D structures from and Proteopedia for RAC1 (see all 31 ):1E96 (3D)
  1FOE (3D)
  1G4U (3D)
  1HE1 (3D)
  1HH4 (3D)
  1I4D (3D)
 
Secondary accessions : O95501 P15154 Q3Y4D3 Q5JAA8 Q9BTB4Alternative splicing : 2 isoforms : P63000-1, P15154-1 P63000-2, P15154-2 (Contains a phosphoserine at position 71)Explore the universe of human proteins at neXtProt for RAC1: NX_P63000 Post-translational modifications:
AMPylation at Tyr-32 and Thr-35 are mediated by bacterial enzymes in case of infection by H.somnus and V.parahaemolyticus, respectively. AMPylation occurs in the effector region and leads to inactivation of the GTPase activity by preventing the interaction with downstream effectors, thereby inhibiting actin assembly in infected cells. It is unclear whether some human enzyme mediates AMPylation; FICD has such ability in vitro but additional experiments remain to be done to confirm results in vivo1
GTP-bound active form is ubiquitinated by HACE1, leading to its degradation by the proteasome1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P63000 RAC1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_008839.2 NP_061485.1 ENSEMBL proteins: ENSP00000258737 ENSP00000348461 Reactome Protein details: P63000 Human Recombinant Protein Products: Gene Ontology (GO): 5/14 cellular component terms (GO ID links to tree view) (see all 14 ): About this table
RAC1 for ontologies About GeneDecksing RAC1 Antibody Products: Assay Products for RAC1:
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Protein
Domains / Familiesfor RAC1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
RAC1 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P63000 ProtoNet protein and cluster: P63000
UniProtKB/Swiss-Prot: RAC1_HUMAN, P63000 Domain : The effector region mediates interaction with DEF6Similarity : Belongs to the small GTPase superfamily. Rho family
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Functionfor RAC1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: RAC1_HUMAN, P63000 Function : Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states.In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages (By similarity). Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. In glioma cells, promotes cell migration and invasion Function : Isoform B has an accelerated GEF-independent GDP/GTP exchange and an impaired GTP hydrolysis, which isrestored partially by GTPase-activating proteins. It is able to bind to the GTPase-binding domain of PAK but not full-length PAK in a GTP-dependent manner, suggesting that the insertion does not completely abolish effector interaction Enzyme regulation : Regulated by guanine nucleotide exchange factors (GEFs) which promote the exchange of bound GDP forfree GTP, GTPase activating proteins (GAPs) which increase the GTP hydrolysis activity, and GDP dissociation inhibitors which inhibit the dissociation of the nucleotide from the GTPase. GTP hydrolysis is stimulated by ARHGAP30
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RAC1 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RAC1 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): RAC1 (NM_006908 ) Sino Biological Human cDNA Clone for RAC1 DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RAC1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RAC1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAC1
Gene Ontology (GO): 5/8 molecular function terms (GO ID links to tree view) (see all 8 ): About this table
RAC1 for ontologies About GeneDecksing 5 GenomeRNAi human phenotypes for RAC1 :Animal Models: Mouse knock-outs for RAC1: Rac1 tm1.1Djk Rac1 tm2Tyb Rac1 tm1Jms 15/16 MGI mutant phenotypes (inferred from 7 alleles ) (MGI details for Rac1) (see all 16 ):
RAC1 for phenotypes About GeneDecksing
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Pathways & Interactionsfor RAC1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/176 super-pathways (see all 176 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Development HGF signaling pathway 2 Cell adhesion_Integrin-mediated cell adhesion and migration 3 G-protein signaling_Ras family GTPases in kinase cascades (scheme) 4 PKC-Theta Pathway 5 Rho Family GTPases
Pathway sources See GeneCards unified pathways Show all pathways 5/46 EMD Millipore Pathways for RAC1 (see all 46 )2 R&D Systems Pathways for RAC1 5/76 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for RAC1 (see all 76 )2
Cell Signaling Technology (CST) Pathways for RAC1 5/49 GeneGo (Thomson Reuters) Pathways for RAC1 (see all 49 )5/72 BioSystems Pathways for RAC1 (see all 72 ) 5/48
Reactome Pathways for RAC1 (see all 48 )2 PharmGKB Pathways for RAC1 5/27
Kegg Pathways (Kegg details for RAC1) (see all 27 ):
RAC1 for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for RAC1 STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/441 Interacting proteins for RAC1 (P63000 1 , 2 , 3 ENSP00000348461 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 441 )Interactant Interaction Details GeneCard External ID(s) PAK1 Q13153 1 , 2 , 3 , ENSP00000278568 4 EBI-413628,EBI-1307 MINT-49675 MINT-8078140 MINT-7145274 MINT-8320267 MINT-60985 MINT-7217644 MINT-7146277 MINT-4298496 MINT-7384952 MINT-7288809 I2D:
score=12 STRING: ENSP00000278568 SET Q01105 2 , 3 , ENSP00000361777 4 MINT-4298550 MINT-4298508 MINT-4298480 MINT-4298402 MINT-8401879 MINT-4298417 MINT-4298434 MINT-4298526 I2D:
score=3 STRING: ENSP00000361777 DOCK1 Q14185 1 , 2 , 3 EBI-413628,EBI-446740 MINT-7306029 MINT-7305963 I2D:
score=6 ARHGEF7 Q14155 2 , 3 , ENSP00000364893 4 MINT-7145257 MINT-7145327 MINT-7145306 MINT-7145341 MINT-7145361 MINT-7145246 MINT-7145235 I2D:
score=3 STRING: ENSP00000364893 PLCG1 P19174 2 , 3 , ENSP00000244007 4 MINT-7230055 MINT-7229927 MINT-7229937 MINT-7229970 MINT-7230002 MINT-7230027 MINT-7229952 I2D:
score=1 STRING: ENSP00000244007
About this table Gene Ontology (GO): 5/56 biological process terms (GO ID links to tree view) (see all 56 ): About this table
RAC1 for ontologies About GeneDecksing
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Drugs & Compoundsfor RAC1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
RAC1 for compounds About GeneDecksing Compounds for RAC1 available from Tocris Bioscience About this table Compound Action
CAS
# NSC 23766 Selective inhibitor of Rac1-GEF interaction; antioncogenic [733767-34-5] EHT 1864 Potent inhibitor of Rac family GTPases [754240-09-0] PKC (19-36) Pseudosubstrate peptide; inhibitor of PKC [113731-96-7]
5 HMDB Compounds for RAC1 About this table 1 DrugBank Compound for RAC1 About this table 10/90 Novoseek chemical compound relationships for RAC1 gene (see all 90 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
gdp
76.8
53
7980444 (5), 10893266 (3), 11900529 (2), 15242348 (2) (see all 27 )
nadph
76.1
128
11007780 (5), 9585526 (3), 19344766 (3), 18658277 (3) (see all 85 )
gtp
69.6
72
7980444 (3), 10893266 (3), 10036235 (2), 12620811 (2) (see all 40 )
phosphatidylinositol
67.3
48
9488489 (3), 19473989 (2), 10594018 (2), 15836616 (2) (see all 34 )
mdi-a
65.8
1
12445462 (1)
diphenyleneiodonium
63.2
8
17008589 (1), 16990552 (1), 10747906 (1), 18218673 (1) (see all 5 )
geranylgeranyl pyrophosphate
62.4
6
16873994 (2), 17556673 (1), 15701825 (1), 17279352 (1)
tyrosine
61.2
48
8816388 (2), 19366706 (2), 17093062 (2), 9430636 (1) (see all 38 )
phosphoinositide
59.6
23
17140407 (3), 11278419 (2), 19723872 (2), 11805146 (1) (see all 12 )
guanosine
59
14
19645540 (2), 17954607 (1), 10871853 (1), 15521546 (1) (see all 11 )
Search CenterWatch for drugs/clinical trials and news about RAC1
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Transcriptsfor RAC1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for RAC1 gene (3 alternative transcripts): NM_006908.4 NM_018890.3 NM_198829.1 Unigene Cluster for RAC1:
Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) Hs.413812 [show with all ESTs ] Unigene Representative Sequence: AB209410 6 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000348035 (uc003spw.3 uc003spx.3 uc021zzg.1 ) ENST00000356142 ENST00000488373 ENST00000497741 ENST00000473564 ENST00000495499 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RAC1 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RAC1 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): RAC1 (NM_006908 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RAC1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RAC1
Additional cDNA sequence: AB209410.1 AB451238.1 AB451363.1 AF136373.1 AF498964.1 AJ012502.1 AJ132694.1 AK054993.1 AK291806.1 AK291815.1 AY279384.1 BC004247.1 BC050687.1 BC107748.1 BT007121.1 D25274.1 M29870.1 M31467.1 U85236.1
24/39 DOTS entries (see all 39 ): DT.100858626 DT.100690590
DT.97864716 DT.100045437 DT.95159201 DT.91931125 DT.92466364 DT.99943990 DT.121127892 DT.92044118 DT.92466365 DT.92005684 DT.100690587 DT.92028822 DT.95159178 DT.100045435 DT.100690586 DT.121127905 DT.100690597 DT.121127838 DT.121245026 DT.100690595 DT.121127894 DT.121127955 24/1283 AceView cDNA sequences (see all 1283 ):
F27873 BM821864 BQ685492 AI343856 CB124290 AK054993 BQ691793 AW008814 BQ671157 AI375450 BM353585 BQ575269 BU556521 BQ685708 AI921305 AI367926 CF129147 BQ927251 BI712530 AK122742 BQ688628 BM807126 BG431253 BQ882850 GeneLoc Exon Structure
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Expression for RAC1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section RAC1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TATGACTTAA
About this image RAC1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See RAC1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for RAC1 SOURCE GeneReport for Unigene cluster: Hs.413812 UniProtKB/Swiss-Prot: RAC1_HUMAN, P63000 Tissue specificity : Isoform B is predominantly identified in skin and epithelial tissues from the intestinal tract. Itsexpression is elevated in colorectal tumors at various stages of neoplastic progression, as compared to their respective adjacent tissues SABiosciences Expression via Pathway-Focused PCR Arrays including RAC1 (see all 15 ): Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RAC1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat RAC1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RAC1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RAC1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAC1
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Orthologsfor RAC1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for RAC1 gene from 8/28 species (see all 28 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
RAC11
ras-related C3 botulinum toxin substrate 1 (rho family, more
88.19(n) 100(a)
 
395871 NM_205017.1 NP_990348.1
lizard (Anolis carolinensis)
Reptilia
RAC16
--
95(a)
1 ↔ 1
GL343507.1(107364-122407)
African clawed frog (Xenopus laevis)
Amphibia
Xl.265882
Xenopus laevis rac GTPase mRNA, complete cds
84.78(n)
 
AF174644.1
zebrafish (Danio rerio)
Actinopterygii
zgc558232
similar to CEll Death abnormality CED-10, RAC related more
80.78(n)
 
393898 BC044501.1
fruit fly (Drosophila melanogaster)
Insecta
Rac13 Rac21
cell proliferation GTPase3 CG8556-PA1
91(a) (best of 4)3 72.22(n) 1 89.58(a) 1
 
3 61F53 38831 1 NM_139864.2 1 NP_648121.1 1
worm (Caenorhabditis elegans)
Secernentea
ced-101 , 3
RAS-related protein3 Protein CED-101
97(a) (best of 5)3 68.59(n) 1 83.25(a) 1
 
IV(3507381-3509495)3 177111 1 NM_067962.4 1 NP_500363.1 1
thale cress (Arabidopsis thaliana)
eudicotyledons
RAC31
Rac-like GTP-binding protein ARAC3
61.02(n) 67.76(a)
 
829654 NM_001203987.1 NP_001190916.1
rice (Oryza sativa)
Liliopsida
Os02g08340001
hypothetical protein
61.14(n) 66.85(a)
 
4331272 NM_001055174.1 NP_001048639.1
ENSEMBL Gene Tree for RAC1 (if available)TreeFam Gene Tree for RAC1 (if available)
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Paralogsfor RAC1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for RAC1 gene RHOH 2 RHOQ 2 RHOBTB1 2 RHOV 2 RHOG 2 RHOU 2 RHOBTB2 2 RAC2 2 CDC42 2 RHOJ 2 RAC3 2 18/40 SIMAP similar genes for RAC1 using alignment to 4 protein entries: RAC1_HUMAN (see all proteins )
(see all similar genes ):RAC3 RAC2 CDC42 ARHG RHOG RHOJ RHOQ RHOV RHOD RHOF RHOU RHOB RHOC RHOH RND2 RHOA ARHE ARHH
RAC1 for paralogs About GeneDecksing 5 Pseudogenes.org Pseudogenes for RAC1 PGOHUM00000234900 PGOHUM00000244483 PGOHUM00000237589 PGOHUM00000232968 PGOHUM00000233232
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Genomic Variantsfor RAC1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 7 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for RAC1 (6414126 - 6443608 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for RAC1 1 Inversion : 37290 Human Gene Mutation Database (HGMD) : RAC1 1 SABiosciences Cancer Mutation PCR Assay for RAC1 : Cosmic Id AA Change 125734 p.P29S
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RAC1
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Disorders
/ Diseasesfor RAC1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
RAC1 for disorders About GeneDecksing
OMIM gene information: 602048
OMIM disorders : --20/96 diseases for RAC1 (see all 96 ): About MalaCards wiskott-aldrich syndrome familial adenomatous polyposis amyotrophic lateral sclerosis (als) amyotrophic lateral sclerosis clostridium difficile non-hodgkin lymphoma myotonic dystrophy lateral sclerosis bullous pemphigoid pituitary adenoma hairy cell leukemia chronic granulomatous disease oral squamous cell carcinoma atrial fibrillation malignant glioma squamous cell carcinoma hodgkin's lymphoma pancreatic ductal adenocarcinoma synovial sarcoma tangier disease 2 diseases from the University of Copenhagen DISEASES database for RAC1 :Cancer Vascular disease 10/57 Novoseek disease relationships for RAC1 gene (see all 57 ) About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
wiskott-aldrich syndrome
49.2
4
11493455 (1), 11179351 (1), 11865026 (1)
metastasis
40.9
33
20426825 (4), 17049467 (3), 17631638 (1), 19276387 (1) (see all 22 )
tumors
38
88
10636882 (4), 20426825 (4), 11606575 (3), 10893266 (3) (see all 47 )
colorectal tumors
27.5
8
16551621 (1), 18165265 (1), 10597294 (1), 11768613 (1)
cancer
25.2
14
20067638 (2), 15160999 (1), 14530271 (1), 15067337 (1) (see all 10 )
glioblastoma
24.3
9
18813807 (4), 14736526 (1), 16027728 (1), 11929835 (1)
astrocytoma
18.5
7
14736526 (2), 16204049 (2), 15242348 (1), 17896341 (1) (see all 5 )
pancreatic tumor
16.5
1
12902401 (1)
glomerulosclerosis
13.6
1
16690620 (1)
melanoma
13.1
14
12482591 (2), 17952876 (2), 11571298 (1), 15059909 (1) (see all 9 )
Human Genome Epidemiology (HuGE) Navigator: RAC1 (15 documents) Export disorders for RAC1 gene to outside databases
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Publicationsfor RAC1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for RAC1 gene, integrated from 9 sources (see all 1340 ): (articles sorted by number of sources associating them with RAC1) Utopia : connect your pdf to the dynamic world of online information
Cloning of a novel human Rac1b splice variant with increased expression in colorectal tumors. (PubMed id 10597294) 1 , 2 , 3, 9 Jordan P....Chastre E. (1999) Rac, a novel ras-related family of proteins that are botulinum toxin substrates. (PubMed id 2674130) 1 , 2 , 3 Didsbury J.... Snyderman R. (1989) Armus is a Rac1 effector that inactivates Rab7 and re gulates E-cadherin degradation. (PubMed id 20116244) 1 , 2 , 9 Frasa M.A....Braga V.M. (2010) Crystal structure of the Rac1-RhoGDI complex involved in NADPH oxidase activation. (PubMed id 11513578) 1 , 2 , 9 Grizot S....Pebay-Peyroula E. (2001) The TRE17 oncogene encodes a component of a novel effector pathway for Rho GTPases Cdc42 and Rac1 and stimulates actin remodeling. (PubMed id 12612085) 1 , 2 , 9 Masuda-Robens J.M....Chou M.M. (2003) Cooperation of DEF6 with activated Rac in regulating cell morphology. (PubMed id 17121847) 1 , 2 , 9 Oka T.... Fukui Y. (2007) Crystal structure of Rac1 in complex with the guanine nucleotide exchange region of Tiam1. (PubMed id 11130063) 1 , 2 , 9 Worthylake D.K.... Sondek J. (2000) Carboxyl-terminal isoprenylation of ras-related GTP-binding proteins encoded by rac1, rac2, and ralA. (PubMed id 1903399) 1 , 2 , 9 Kinsella B.T.... Maltese W.A. (1991) The E3 ubiquitin-ligase HACE1 catalyzes the ubiquitylation of active Rac1. (PubMed id 22036506) 1 , 2 Torrino S.... Lemichez E. (2011) The SWI/SNF protein BAF60b is ubiquitinated through a signalling process involving Rac GTPase and the RING finger protein Unkempt. (PubMed id 20148946) 1 , 2 LorA"s P....Gacon G. (2010)
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External Searches for RAC1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing RAC1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing RAC1 gene
(According to HUGE )
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Specialized Databases showing RAC1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for RAC1 gene: Search GeneIP for patents involving RAC1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor RAC1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for RAC1 Browse OriGene shRNA RFPs OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for RAC1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RAC1 OriGene Protein Over-expression Lysate for RAC1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for RAC1 OriGene 3'-UTR Clone for RAC1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RAC1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RAC1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for RAC1 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for RAC1 OriGene Custom Protein Services for RAC1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RAC1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RAC1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RAC1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat RAC1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RAC1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RAC1
Antibodies & Assays for RAC1  
Tocris compounds for RAC1
Recombinant Protein for RAC1
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAC1
ThermoFisher Antibody for RAC1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RAC1
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