Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RABGGTB Gene

protein-coding   GIFtS: 55
GCID: GC01P076251

Rab geranylgeranyltransferase, beta subunit

 Explore 7 diseases affiliated with
RABGGTB via our new
 Human Malady Compendium 
Biological research products
for RABGGTB
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Rab Geranylgeranyltransferase, Beta Subunit1 2     EC 2.5.1.603 8
Rab GG Transferase Beta2 3     Geranylgeranyl Transferase Type-2 Subunit Beta2
Rab GGTase Beta2 3     Geranylgeranyl Transferase Type II Subunit Beta3
Type II Protein Geranyl-Geranyltransferase Subunit Beta2 3     Rab Geranyl-Geranyltransferase Subunit Beta3
GGTB2 3     Rab Geranylgeranyltransferase Subunit Beta3
GGTase-II-Beta1     

External Ids:    HGNC: 97961   Entrez Gene: 58762   Ensembl: ENSG000001379557   OMIM: 1790805   UniProtKB: P536113   

Export aliases for RABGGTB gene to outside databases

Previous GC identifers: GC01P076371 GC01P075186 GC01P075667 GC01P075674 GC01P075963 GC01P076024 GC01P074381


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RABGGTB:
This gene encodes the beta-subunit of the enzyme Rab geranylgeranyl-transferase (RabGGTase), which belongs to the
protein prenyltransferase family. RabGGTase catalyzes the post-translational addition of geranylgeranyl groups to
C-terminal cysteine residues of Rab GTPases. Three small nucleolar RNA genes are present in the intronic regions of
this gene. Alternately spliced transcript variants have been observed for this gene. A pseudogene associated with this
gene is located on chromosome 3. (provided by RefSeq, Jan 2013)

UniProtKB/Swiss-Prot: PGTB2_HUMAN, P53611
Function: Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in
Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_032977.9  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RABGGTB gene promoter:
         AP-4   E4BP4   Evi-1   C/EBPalpha   POU2F1   GATA-6   POU2F1a   FOXJ2 (long isoform)   FOXJ2   LyF-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): RABGGTB promoter sequence
   Search SABiosciences Chromatin IP Primers for RABGGTB

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RABGGTB


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p31   Ensembl cytogenetic band:  1p31.1   HGNC cytogenetic band: 1p31

RABGGTB Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RABGGTB gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P076251:  view genomic region     (about GC identifiers)

Start:
76,251,879 bp from pter      End:
76,260,764 bp from pter
Size:
8,886 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: PGTB2_HUMAN, P53611 (See protein sequence)
Recommended Name: Geranylgeranyl transferase type-2 subunit beta  
Size: 331 amino acids; 36924 Da
Cofactor: Binds 1 zinc ion per subunit (By similarity)
Subunit: Heterodimer of an alpha and a beta subunit, collectively called component B. The Rab GGTase dimer (RGGT) can
associate with CHM (component A) prior to Rab protein binding; the association is stabilized by geranylgeranyl
pyrophosphate (GGpp). The CHM:RGGT:Rab complex is destabilized by GGpp. Interaction of beta subunit with prenylated
PTP4A2 precludes its association with subunit alpha, and inhibits enzyme activity
Secondary accessions: Q92697

Explore the universe of human proteins at neXtProt for RABGGTB: NX_P53611

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P53611

  • 4/6 DME Specific Peptides for RABGGTB (P53611) (see all 6)
     NFDGGFG  ESHAGQI  TLSAVQIL  DVCYSWWVL 

    RABGGTB Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_004573.2  
    ENSEMBL proteins: 
     ENSP00000317473   ENSP00000359862   ENSP00000440452  

    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate: RABGGTB
    OriGene Custom Protein Services for RABGGTB 
    GenScript Custom Purified and Recombinant Proteins Services for RABGGTB
    Novus Biologicals RABGGTB Protein
    Novus Biologicals RABGGTB Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Browse Proteins at Uscn


    RABGGTB Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for RABGGTB 
    GenScript Custom Superior Antibodies Services for RABGGTB
    Novus Biologicals RABGGTB Antibodies
    Search for Antibodies for RABGGTB at Abcam  
    Browse Antibodies at Uscn
    Search ThermoFisher Antibodies for RABGGTB

    Assay Products for RABGGTB: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for RABGGTB
    Browse Enzo Life Sciences for kits & assays
    Browse ELISAs and CLIAs at Uscn


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    RABGGTB for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR026873 Ptb1
     IPR008930 Terpenoid_cyclase/PrenylTrfase
     IPR001330 Prenyltrans

    Graphical View of Domain Structure for InterPro Entry P53611

    ProtoNet protein and cluster: P53611

    1 Blocks protein family: IPB001330 Prenyltransferase/squalene oxidase

    UniProtKB/Swiss-Prot: PGTB2_HUMAN, P53611
    Similarity: Belongs to the protein prenyltransferase subunit beta family
    Similarity: Contains 6 PFTB repeats


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: PGTB2_HUMAN, P53611
    Function: Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in
    Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively
    Catalytic activity: Geranylgeranyl diphosphate + protein-cysteine = S-geranylgeranyl-protein + diphosphate
    Enzyme regulation: The enzymatic reaction requires the aid of a Rab escort protein (also called component A)

         Genatlas biochemistry entry for RABGGTB:
    Rab geranyl-geranyltransferase B,type II,beta subunit

    Enzyme Number (IUBMB): EC 2.5.1.601 2

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: RABGGTB
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RABGGTB
    3 QIAGEN miScript miRNA Assays for microRNAs that regulate RABGGTB:
    hsa-miR-3671 hsa-miR-32* hsa-miR-3924
    SwitchGear 3'UTR luciferase reporter plasmidRABGGTB 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RABGGTB (see all 7)
    OriGene shRNA RFP: RABGGTB
    OriGene siRNA: RABGGTB
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RABGGTB

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for RABGGTB

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RABGGTB (see all 5)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RABGGTB
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: RABGGTB (NM_004582)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RABGGTB
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RABGGTB 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for RABGGTB
    Search LifeMap BioReagents cell lines for RABGGTB

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RABGGTB

    Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004663Rab geranylgeranyltransferase activity IEA--
    GO:0005515protein binding IPI12620389
    GO:0016740transferase activity ----
    GO:0046872metal ion binding IEA--


    RABGGTB for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for RABGGTB:
     Synthetic lethal with c-Myc af 

    Animal Models:
         Mouse knock-out Rabggtbtm1Lex for RABGGTB
         1 MGI phenotypic allele for Rabggtb (no phenotypes)

    RABGGTB for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Signaling events mediated by PRL
    Signaling events mediated by PRL1.00


    1 BioSystems Pathway for RABGGTB 
        Signaling events mediated by PRL


    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RABGGTB

    STRING Interaction Network Preview (showing 5 interactants - click image to see 19)

    5/40 Interacting proteins for RABGGTB (P536111, 2, 3 ENSP000003174734) via UniProtKB, MINT, STRING, and/or I2D (see all 40)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ARAFP103981, 2, 3, ENSP000003662444EBI-536715,EBI-365961 MINT-19316 I2D: score=6 STRING: ENSP00000366244
    RABGGTAQ926963, ENSP000002168404I2D: score=6 STRING: ENSP00000216840
    CHMLP263743, ENSP000003555114I2D: score=1 STRING: ENSP00000355511
    RAB3AP203363, ENSP000002222564I2D: score=2 STRING: ENSP00000222256
    ALAS2P225573, ENSP000003323694I2D: score=2 STRING: ENSP00000332369
    About this table

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006464cellular protein modification process NAS8380507
    GO:0007601visual perception TAS8380507
    GO:0018344protein geranylgeranylation IEA--


    RABGGTB for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    EMD Millipore small molecules for RABGGTB:
    Small Molecule - inhibitor
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RABGGTB

    4 DrugBank Compounds for RABGGTB    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    FARNESYL-- --target--10592235
    FARNESYL DIPHOSPHATE-- --target--10592235
    GERANYLGERANYL DIPHOSPHATE-- --target--10592235
    N-Formylmethionine-- --target--10592235

    Search CenterWatch for drugs/clinical trials and news about RABGGTB / PGTB2 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RABGGTB gene: 
    NM_004582.3  

    Unigene Cluster for RABGGTB:

    Rab geranylgeranyltransferase, beta subunit
    Hs.78948  [show with all ESTs]
    Unigene Representative Sequence: AB209023
    15 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000496055 ENST00000319942(uc001dgy.1 uc009wbt.1 uc001dhc.1)
    ENST00000473406 ENST00000485459 ENST00000370826 ENST00000497648 ENST00000462042
    ENST00000470201 ENST00000471759 ENST00000491266 ENST00000461653 ENST00000489450
    ENST00000467748 ENST00000459697 ENST00000535300

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: RABGGTB
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RABGGTB
    3 QIAGEN miScript miRNA Assays for microRNAs that regulate RABGGTB:
    hsa-miR-3671 hsa-miR-32* hsa-miR-3924
    SwitchGear 3'UTR luciferase reporter plasmidRABGGTB 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RABGGTB (see all 7)
    OriGene shRNA RFP: RABGGTB
    OriGene siRNA: RABGGTB
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RABGGTB
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RABGGTB (see all 5)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RABGGTB
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: RABGGTB (NM_004582)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RABGGTB
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RABGGTB 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RABGGTB
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RABGGTB
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RABGGTB
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RABGGTB

    Additional cDNA sequence: 

    AB209023.1 AK127197.1 AK128861.1 AK293057.1 BC020790.1 BC035873.1 CR456941.1 U49245.1 
    X98001.1 Y08201.1 

    22 DOTS entries:

    DT.102832090  DT.449019  DT.95208188  DT.101984375  DT.92443127  DT.99992446  DT.100029891  DT.102832089 
    DT.92443131  DT.97847166  DT.40121418  DT.100797567  DT.97847169  DT.100797568  DT.102832088  DT.91725981 
    DT.100826150  DT.121438470  DT.92443137  DT.95331595  DT.97847167  DT.451554 

    24/344 AceView cDNA sequences (see all 344):

    R38066 BE349463 AI306733 BM555052 AA937894 AL702673 AA970379 AI298550 
    BM456849 F13029 AA767717 AA427560 AL552269 BI755898 AL707762 BC020790 
    CA390791 BU751998 BF511377 BQ003690 BM709893 BQ446510 CB130720 AK127197 

    GeneLoc Exon Structure

    5/23 Alternative Splicing Database (ASD) splice patterns (SP) for RABGGTB (see all 23)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c · 2d ^ 3a · 3b · 3c · 3d · 3e ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b · 9c ^ 10a · 10b ·
    SP1:                    -     -     -     -                             -                 -                 -     -     -     -     -                           
    SP2:                                                                    -                 -     -           -     -     -     -     -                           
    SP3:                                      -                             -                 -                 -     -     -     -     -                           
    SP4:                          -     -     -                             -                 -                 -     -     -     -     -                           
    SP5:                                                                                                                                -                           

    ExUns: 10c · 10d · 10e ^ 11a · 11b · 11c · 11d ^ 12a · 12b ^ 13a · 13b · 13c · 13d
    SP1:        -     -                             -                                 
    SP2:        -     -                             -                                 
    SP3:        -     -                                                               
    SP4:                                                                              
    SP5:        -     -                             -                                 


    ECgene alternative splicing isoforms for RABGGTB

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RABGGTB expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See RABGGTB Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RABGGTB

    SOURCE GeneReport for Unigene cluster: Hs.78948
        SABiosciences Custom PCR Arrays for RABGGTB
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RABGGTB
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RABGGTB
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RABGGTB
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RABGGTB
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RABGGTB

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for RABGGTB gene from 9/33 species (see all 33)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves RABGGTB1 Rab geranylgeranyltransferase, beta subunit 80.56(n)
    91.24(a)
      424723  XM_422548.3  XP_422548.2 
    lizard
    (Anolis carolinensis)
    Reptilia RABGGTB6
    --
    88(a)
    1 ↔ 1
    GL343194.1(3342089-3350409)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia Str.48482 Transcribed sequence with moderate similarity to protein more 80.45(n)    142026521 
    zebrafish
    (Danio rerio)
    Actinopterygii BC049442.12   -- 75.77(n)    BC049442.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta &bgr;ggt-II3
    betaggt-II1
    CAAX-protein geranylgeranyltransferase3
    beta subunit of type II geranylgeranyl transferase1
    64(a)3
    58.14(n)1
    65.05(a)1
      23B73
    477571  NM_080155.21  NP_524894.11 
    worm
    (Caenorhabditis elegans)
    Secernentea B0280.1b3
    ggtb-11
    Protein GGTB-11 55(a)
    (best of 2)3
    57.7(n)1
    55.7(a)1
      III(7205630-7207637)3
    1759981  NM_066158.51  NP_498559.11 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes BET2(YPR176C)4
    BET21
    Beta subunit of Type II geranylgeranyltransferase required more4
    Bet2p1
    55.52(n)1
    53.38(a)1
      16(892078-891101)4
    8563061, 4  NP_015502.11, 4 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons RGTB11 RAB geranylgeranyl transferase beta subunit 1 59.15(n)
    58.5(a)
      831094  NM_121259.3  NP_568259.1 
    rice
    (Oryza sativa)
    Liliopsida AK102273.12   -- 75.97(n)    AK102273.1 


    ENSEMBL Gene Tree for RABGGTB (if available)
    TreeFam Gene Tree for RABGGTB (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for RABGGTB gene
    PGGT1B2  
    1 SIMAP similar gene for RABGGTB using alignment to 4 protein entries:     PGTB2_HUMAN (see all proteins):
    CHURC1-FNTB

    RABGGTB for paralogs           About GeneDecksing


    2 Pseudogenes.org Pseudogenes for RABGGTB
    PGOHUM00000238134 PGOHUM00000259864


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/78 NCBI SNPs in RABGGTB are shown (see all 78    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs742258521,2
    --74381339(+) CCATTG/TCAAGT 1 -- us2k10--------
    rs11466331,2
    C,F,H,--74381645(-) CACGGC/GTGCCG 1 -- us2k17Minor allele frequency- G:0.08NS EA NA WA 540
    rs355059411,2
    C,F,--74382015(+) GGAGGG/ACCTGT 1 -- int16Minor allele frequency- A:0.07NA CSA WA 246
    rs353217121,2
    C,F,--74382034(+) GAGCAG/ACCCGA 1 -- int16Minor allele frequency- A:0.07NA CSA WA 246
    rs785095321,2
    --74382101(+) AGGGGG/TTGTCA 1 -- int10--------
    rs614853281,2
    C,--74382271(+) GAGCCG/ACATCA 1 -- int12Minor allele frequency- A:0.07CSA WA 121
    rs743198181,2
    --74382516(+) ATATTC/TTATGG 1 -- int10--------
    rs16944091,2
    --74383970(-) actagC/Ttgggc 1 -- int12Minor allele frequency- T:0.09NA WA 120
    rs16944081,2
    --74383971(-) aactaG/Actggg 1 -- int13Minor allele frequency- A:0.09NA WA 122
    rs1117249061,2
    C,--74388015(+) ACTCAT/CTGATC 1 -- int12Minor allele frequency- C:0.02NA 122

    HapMap Linkage Disequilibrium report for RABGGTB (76251879 - 76260764 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for RABGGTB: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RABGGTB
    DNA2.0 Custom Variant and Variant Library Synthesis for RABGGTB

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    RABGGTB for disorders           About GeneDecksing

    OMIM gene information: 179080    OMIM disorders: --

    7 diseases for RABGGTB:    About MalaCards
    choroideremia    retinal degeneration    retinitis    colorectal cancer
    melanoma    malaria    choroiditis

    Human Genome Epidemiology (HuGE) Navigator: RABGGTB (1 document)

    Export disorders for RABGGTB gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RABGGTB gene, integrated from 9 sources (see all 39):
    (articles sorted by number of sources associating them with RABGGTB)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. cDNA cloning and chromosomal localization of the genes encoding the alpha- and beta-subunits of human Rab geranylgeranyl transferase: the 3' end of the alpha-subunit gene overlaps with the transglutaminase 1 gene promoter. (PubMed id 8954794)1, 2, 3 van Bokhoven H....Seabra M.C. (1996)
    2. Characterization of the interaction of the monomeric GTP-binding protein Rab3a with geranylgeranyl transferase II. (PubMed id 8706741)1, 2, 3 Johannes L.... Darchen F. (1996)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Interaction of farnesylated PRL-2, a protein-tyrosine phosphatase, with the beta-subunit of geranylgeranyltransferase II. (PubMed id 11447212)1, 2 Si X.... Pallen C.J. (2001)
    5. Rab geranylgeranyl transferase catalyzes the geranylgeranylation of adjacent cysteines in the small GTPases Rab1A, Rab3A, and Rab5A. (PubMed id 7991565)1, 2 Farnsworth C.C.... Glomset J.A. (1994)
    6. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    7. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    8. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    9. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    10. Regulation of I^2-adrenergic receptor maturation and a nterograde trafficking by an interaction with Rab geranylgeranyltransferase: mo dulation of Rab geranylgeranylation by the receptor. (PubMed id 21990357)1 Lachance V....Parent J.L. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 5876 HGNC: 9796 AceView: RABGGTB Ensembl:ENSG00000137955 euGenes: HUgn5876
    ECgene: RABGGTB H-InvDB: RABGGTB

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RABGGTB Pharmacogenomics, SNPs, Pathways
    Wikipedia http://en.wikipedia.org/wiki/Rab_geranylgeranyltransferase

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RABGGTB gene:
    Search GeneIP for patents involving RABGGTB

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
     Browse for Gene Knock-down Tools from EMD Millipore
     EMD Millipore small molecules (inhibitor) for RABGGTB
     Browse Kits and Assays available from EMD Millipore
     Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
     Browse Purified and Recombinant Proteins at EMD Millipore
     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for RABGGTB  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RABGGTB   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RABGGTB  
     OriGene Protein Over-expression Lysate for RABGGTB   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for RABGGTB   OriGene 3'-UTR Clone for RABGGTB  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RABGGTB   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RABGGTB  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for RABGGTB   OriGene Custom Protein Services for RABGGTB  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RABGGTB
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RABGGTB
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RABGGTB
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RABGGTB
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RABGGTB
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RABGGTB
     GenScript Custom Purified and Recombinant Proteins Services for RABGGTB GenScript cDNA clones with any tag delivered in your preferred vector for RABGGTB
     GenScript Custom Assay Services for RABGGTB GenScript Custom Superior Antibodies Services for RABGGTB
     GenScript Custom overexpressing Cell Line Services for RABGGTB CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in RABGGTB promoter
     Search Chromatin IP Primers for RABGGTB
     RT2 qPCR Primer Assay in human, mouse, rat RABGGTB
     Search GNC Networks for RABGGTB
     SABiosciences Custom PCR Arrays for RABGGTB
     Search Tocris compounds for RABGGTB
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     RABGGTB antibodies
     RABGGTB proteins
     RABGGTB lysates
     Search for Antibodies for RABGGTB at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for RABGGTB
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     Browse ELISAs, CLIAs, Proteins, and Antibodies at Uscn
     Search LifeMap BioReagents cell lines for RABGGTB
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RABGGTB
     SwitchGear 3'UTR luciferase reporter plasmids for RABGGTB
     SwitchGear Promoter luciferase reporter plasmids for RABGGTB
     Search ThermoFisher Antibodies for RABGGTB
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RABGGTB
           
    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      RABGGTB gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 100 solr: 1.4