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Aliases for RAB9BP1 Gene

Subcategory (RNA class) for RAB9BP1 Gene

lncRNA

Aliases for RAB9BP1 Gene

  • RAB9B, Member RAS Oncogene Family Pseudogene 1 2 3 5
  • RAB9, Member RAS Oncogene Family, Pseudogene 1 2 3
  • RAB9A, Member RAS Oncogene Family Pseudogene 3
  • RAB9P1 3

External Ids for RAB9BP1 Gene

ORGUL Members for RAB9BP1 Gene

Previous HGNC Symbols for RAB9BP1 Gene

  • RAB9P1

Previous GeneCards Identifiers for RAB9BP1 Gene

  • GC05P104435
  • GC05P099612

Summaries for RAB9BP1 Gene

GeneCards Summary for RAB9BP1 Gene

RAB9BP1 (RAB9B, Member RAS Oncogene Family Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB9BP1 Gene

Genomics for RAB9BP1 Gene

Regulatory Elements for RAB9BP1 Gene

Enhancers for RAB9BP1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RAB9BP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RAB9BP1 Gene

Chromosome:
5
Start:
105,099,473 bp from pter
End:
105,100,098 bp from pter
Size:
626 bases
Orientation:
Plus strand

Genomic View for RAB9BP1 Gene

Genes around RAB9BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB9BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB9BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB9BP1 Gene

Proteins for RAB9BP1 Gene

Post-translational modifications for RAB9BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAB9BP1 Gene

Domains & Families for RAB9BP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAB9BP1 Gene

Function for RAB9BP1 Gene

Phenotypes for RAB9BP1 Gene

GenomeRNAi human phenotypes for RAB9BP1:
genes like me logo Genes that share phenotypes with RAB9BP1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAB9BP1 Gene

Localization for RAB9BP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAB9BP1 Gene

Pathways & Interactions for RAB9BP1 Gene

SuperPathways for RAB9BP1 Gene

No Data Available

Interacting Proteins for RAB9BP1 Gene

Gene Ontology (GO) - Biological Process for RAB9BP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAB9BP1 Gene

Drugs & Compounds for RAB9BP1 Gene

No Compound Related Data Available

Transcripts for RAB9BP1 Gene

mRNA/cDNA for RAB9BP1 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAB9BP1 Gene

No ASD Table

Relevant External Links for RAB9BP1 Gene

GeneLoc Exon Structure for
RAB9BP1
ECgene alternative splicing isoforms for
RAB9BP1

Expression for RAB9BP1 Gene

mRNA expression in normal human tissues for RAB9BP1 Gene

SOURCE GeneReport for Unigene cluster for RAB9BP1 Gene Hs.158296

genes like me logo Genes that share expression patterns with RAB9BP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RAB9BP1 Gene

Orthologs for RAB9BP1 Gene

Evolution for RAB9BP1 Gene

ENSEMBL:
Gene Tree for RAB9BP1 (if available)
TreeFam:
Gene Tree for RAB9BP1 (if available)

No data available for Orthologs for RAB9BP1 Gene

Paralogs for RAB9BP1 Gene

No data available for Paralogs for RAB9BP1 Gene

Variants for RAB9BP1 Gene

Sequence variations from dbSNP and Humsavar for RAB9BP1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs6867650 -- 105,099,204(+) TCTGC(G/T)CCTGA upstream-variant-2KB
rs4264921 -- 105,100,035(+) GGTCT(A/C/G)ACTTC nc-transcript-variant
rs6873768 -- 105,100,447(+) ATTTT(G/T)TCCTG downstream-variant-500B
rs4476696 -- 105,099,447(+) AACAA(C/T)TAAGA upstream-variant-2KB
rs4481329 -- 105,100,301(+) GGCAC(C/T)TTACA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RAB9BP1 Gene

Variant ID Type Subtype PubMed ID
nsv882545 CNV Loss 21882294
nsv428122 CNV Gain 18775914
dgv6258n71 CNV Gain 21882294
dgv1833e1 CNV Complex 17122850
nsv882562 CNV Loss 21882294
dgv351n21 CNV Loss 19592680
nsv882566 CNV Loss 21882294
nsv4944 CNV Loss 18451855
essv21093 CNV CNV 17122850
nsv10737 CNV Loss 18304495
dgv111n17 CNV Loss 16327808
nsv471031 CNV Loss 18288195
nsv469797 CNV Gain 16826518
nsv433231 CNV Loss 18776910
dgv717n27 CNV Loss 19166990
nsv517325 CNV Loss 19592680
nsv818371 CNV Loss 17921354
esv2664443 CNV Deletion 23128226
nsv499711 CNV Loss 21111241
esv25906 CNV Loss 19812545
esv33504 CNV Loss 17666407
nsv471032 CNV Gain 18288195
dgv6259n71 CNV Loss 21882294

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for RAB9BP1 Gene

Disorders for RAB9BP1 Gene

Relevant External Links for RAB9BP1

Genetic Association Database (GAD)
RAB9BP1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAB9BP1

No disorders were found for RAB9BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB9BP1 Gene

Publications for RAB9BP1 Gene

  1. Cloning and mapping of human Rab7 and Rab9 cDNA sequences and identification of a Rab9 pseudogene. (PMID: 9126495) Davies J.P. … Ioannou Y.A. (Genomics 1997) 2 3 67
  2. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low S.K. … Nakamura Y. (Cancer Sci. 2013) 3
  3. Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese. (PMID: 24165912) He J. … Gu D. (Circ Cardiovasc Genet 2013) 3

Products for RAB9BP1 Gene

Sources for RAB9BP1 Gene

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