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Aliases for RAB9BP1 Gene

Subcategory (RNA class) for RAB9BP1 Gene

lncRNA

Aliases for RAB9BP1 Gene

  • RAB9B, Member RAS Oncogene Family Pseudogene 1 2 3 5
  • RAB9, Member RAS Oncogene Family, Pseudogene 1 2 3
  • RAB9A, Member RAS Oncogene Family Pseudogene 3
  • RAB9P1 3

External Ids for RAB9BP1 Gene

ORGUL Members for RAB9BP1 Gene

Previous HGNC Symbols for RAB9BP1 Gene

  • RAB9P1

Previous GeneCards Identifiers for RAB9BP1 Gene

  • GC05P104435
  • GC05P099612

Summaries for RAB9BP1 Gene

GeneCards Summary for RAB9BP1 Gene

RAB9BP1 (RAB9B, Member RAS Oncogene Family Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class. Diseases associated with RAB9BP1 include Glaucoma 1, Open Angle, E.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB9BP1 Gene

Genomics for RAB9BP1 Gene

Regulatory Elements for RAB9BP1 Gene

Enhancers for RAB9BP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around RAB9BP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RAB9BP1 Gene

Chromosome:
5
Start:
105,099,473 bp from pter
End:
105,100,098 bp from pter
Size:
626 bases
Orientation:
Plus strand

Genomic View for RAB9BP1 Gene

Genes around RAB9BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB9BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB9BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB9BP1 Gene

Proteins for RAB9BP1 Gene

Post-translational modifications for RAB9BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAB9BP1 Gene

Domains & Families for RAB9BP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAB9BP1 Gene

Function for RAB9BP1 Gene

Phenotypes for RAB9BP1 Gene

GenomeRNAi human phenotypes for RAB9BP1:
genes like me logo Genes that share phenotypes with RAB9BP1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAB9BP1 Gene

Localization for RAB9BP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAB9BP1 Gene

Pathways & Interactions for RAB9BP1 Gene

SuperPathways for RAB9BP1 Gene

No Data Available

Interacting Proteins for RAB9BP1 Gene

Gene Ontology (GO) - Biological Process for RAB9BP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAB9BP1 Gene

Drugs & Compounds for RAB9BP1 Gene

No Compound Related Data Available

Transcripts for RAB9BP1 Gene

mRNA/cDNA for RAB9BP1 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAB9BP1 Gene

No ASD Table

Relevant External Links for RAB9BP1 Gene

GeneLoc Exon Structure for
RAB9BP1
ECgene alternative splicing isoforms for
RAB9BP1

Expression for RAB9BP1 Gene

mRNA expression in normal human tissues for RAB9BP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RAB9BP1 Gene:

RAB9BP1

SOURCE GeneReport for Unigene cluster for RAB9BP1 Gene:

Hs.158296
genes like me logo Genes that share expression patterns with RAB9BP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RAB9BP1 Gene

Orthologs for RAB9BP1 Gene

Evolution for RAB9BP1 Gene

ENSEMBL:
Gene Tree for RAB9BP1 (if available)
TreeFam:
Gene Tree for RAB9BP1 (if available)

No data available for Orthologs for RAB9BP1 Gene

Paralogs for RAB9BP1 Gene

No data available for Paralogs for RAB9BP1 Gene

Variants for RAB9BP1 Gene

Sequence variations from dbSNP and Humsavar for RAB9BP1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs4264921 -- 105,100,035(+) GGTCT(A/C/G)ACTTC nc-transcript-variant
rs4476696 -- 105,099,447(+) AACAA(C/T)TAAGA upstream-variant-2KB
rs4481329 -- 105,100,301(+) GGCAC(C/T)TTACA downstream-variant-500B
rs4571441 -- 105,099,675(+) AGGAG(C/T)GATTC nc-transcript-variant
rs12188361 -- 105,098,184(+) TTTTT(C/T)TTTTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RAB9BP1 Gene

Variant ID Type Subtype PubMed ID
dgv111n17 CNV loss 16327808
dgv1633e212 CNV loss 25503493
dgv351n21 CNV loss 19592680
dgv5763n100 CNV loss 25217958
dgv5768n100 CNV loss 25217958
dgv717n27 CNV loss 19166990
dgv9984n54 CNV loss 21841781
dgv9985n54 CNV loss 21841781
dgv9986n54 CNV loss 21841781
esv25906 CNV loss 19812545
esv2664443 CNV deletion 23128226
esv2759365 CNV loss 17122850
esv2763925 CNV loss 21179565
esv33504 CNV loss 17666407
esv3566399 CNV deletion 23714750
esv3570317 CNV loss 25503493
esv3606136 CNV loss 21293372
esv3606138 CNV loss 21293372
esv3606139 CNV gain 21293372
esv3890698 CNV loss 25118596
nsv1020195 CNV loss 25217958
nsv1022638 CNV gain 25217958
nsv1023731 CNV loss 25217958
nsv1027333 CNV gain+loss 25217958
nsv1027994 CNV gain 25217958
nsv1028408 CNV loss 25217958
nsv10737 CNV loss 18304495
nsv428122 CNV gain 18775914
nsv433231 CNV loss 18776910
nsv469797 CNV gain 16826518
nsv471031 CNV loss 18288195
nsv471032 CNV gain 18288195
nsv4944 CNV deletion 18451855
nsv499711 CNV loss 21111241
nsv517325 CNV loss 19592680
nsv599214 CNV loss 21841781
nsv599216 CNV gain 21841781
nsv599230 CNV loss 21841781
nsv599231 CNV loss 21841781
nsv818371 CNV loss 17921354

Relevant External Links for RAB9BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB9BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAB9BP1 Gene

Disorders for RAB9BP1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for RAB9BP1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
glaucoma 1, open angle, e
  • primary open angle glaucoma
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for RAB9BP1

Genetic Association Database (GAD)
RAB9BP1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAB9BP1
genes like me logo Genes that share disorders with RAB9BP1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RAB9BP1 Gene

Publications for RAB9BP1 Gene

  1. Cloning and mapping of human Rab7 and Rab9 cDNA sequences and identification of a Rab9 pseudogene. (PMID: 9126495) Davies J.P. … Ioannou Y.A. (Genomics 1997) 2 3 65
  2. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low S.K. … Nakamura Y. (Cancer Sci. 2013) 3 65
  3. Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese. (PMID: 24165912) He J. … Gu D. (Circ Cardiovasc Genet 2013) 3 65
  4. Genome-wide association study of personality traits in bipolar patients. (PMID: 21368711) Alliey-Rodriguez N. … Gershon E.S. (Psychiatr. Genet. 2011) 46 65
  5. Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption. (PMID: 21490707) Cornelis M.C. … Caporaso N.E. (PLoS Genet. 2011) 46 65

Products for RAB9BP1 Gene

Sources for RAB9BP1 Gene

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