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Aliases for RAB9BP1 Gene

Subcategory (RNA class) for RAB9BP1 Gene

lncRNA

Aliases for RAB9BP1 Gene

  • RAB9B, Member RAS Oncogene Family Pseudogene 1 2 3
  • RAB9, Member RAS Oncogene Family, Pseudogene 1 2 3
  • RAB9A, Member RAS Oncogene Family Pseudogene 3
  • RAB9P1 3

External Ids for RAB9BP1 Gene

ORGUL Members for RAB9BP1 Gene

Previous Symbols for RAB9BP1 Gene

  • RAB9P1

Summaries for RAB9BP1 Gene

GeneCards Summary for RAB9BP1 Gene

RAB9BP1 (RAB9B, Member RAS Oncogene Family Pseudogene 1) is a Pseudogene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB9BP1 Gene

Genomics for RAB9BP1 Gene

Genomic Location for RAB9BP1 Gene

Start:
105,099,473 bp from pter
End:
105,100,098 bp from pter
Size:
626 bases
Orientation:
Plus strand

Genomic View for RAB9BP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RAB9BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB9BP1 Gene

No data available for Regulatory Elements for RAB9BP1 Gene

Proteins for RAB9BP1 Gene

Post-translational modifications for RAB9BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAB9BP1 Gene

Domains for RAB9BP1 Gene

Gene Families for RAB9BP1 Gene

HGNC:
  • RAB :RAB, member RAS oncogene
genes like me logo Genes that share domains with RAB9BP1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for RAB9BP1 Gene

Function for RAB9BP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RAB9BP1 Gene

Localization for RAB9BP1 Gene

No data available for Gene Ontology (GO) - Cellular Components for RAB9BP1 Gene

Pathways for RAB9BP1 Gene

SuperPathways for RAB9BP1 Gene

No Data Available

Interacting Proteins for RAB9BP1 Gene

Gene Ontology (GO) - Biological Process for RAB9BP1 Gene

None

No data available for Pathways by source for RAB9BP1 Gene

Transcripts for RAB9BP1 Gene

mRNA/cDNA for RAB9BP1 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAB9BP1 Gene

No ASD Table

Relevant External Links for RAB9BP1 Gene

GeneLoc Exon Structure for
RAB9BP1
ECgene alternative splicing isoforms for
RAB9BP1

Expression for RAB9BP1 Gene

mRNA expression in normal human tissues for RAB9BP1 Gene

SOURCE GeneReport for Unigene cluster for RAB9BP1 Gene Hs.158296

genes like me logo Genes that share expressions with RAB9BP1: view

Orthologs for RAB9BP1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for RAB9BP1 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Rab9b-ps1 16
Species with no ortholog for RAB9BP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RAB9BP1 Gene

ENSEMBL:
Gene Tree for RAB9BP1 (if available)
TreeFam:
Gene Tree for RAB9BP1 (if available)

Paralogs for RAB9BP1 Gene

No data available for Paralogs for RAB9BP1 Gene

Variants for RAB9BP1 Gene

Sequence variations from dbSNP and Humsavar for RAB9BP1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs4264921 -- 105,100,035(+) GGTCT(A/C/G)ACTTC nc-transcript-variant
rs4476696 -- 105,099,447(+) AACAA(C/T)TAAGA upstream-variant-2KB
rs4481329 -- 105,100,301(+) GGCAC(C/T)TTACA downstream-variant-500B
rs4571441 -- 105,099,675(+) AGGAG(C/T)GATTC nc-transcript-variant
rs6867650 -- 105,099,204(+) TCTGC(G/T)CCTGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RAB9BP1 Gene

Variant ID Type Subtype PubMed ID
nsv882545 CNV Loss 21882294
nsv428122 CNV Gain 18775914
dgv6258n71 CNV Gain 21882294
dgv1833e1 CNV Complex 17122850
nsv882562 CNV Loss 21882294
dgv351n21 CNV Loss 19592680
nsv882566 CNV Loss 21882294
nsv4944 CNV Loss 18451855
essv21093 CNV CNV 17122850
nsv10737 CNV Loss 18304495
dgv111n17 CNV Loss 16327808
nsv471031 CNV Loss 18288195
nsv469797 CNV Gain 16826518
nsv433231 CNV Loss 18776910
dgv717n27 CNV Loss 19166990
nsv517325 CNV Loss 19592680
nsv818371 CNV Loss 17921354
esv2664443 CNV Deletion 23128226
nsv499711 CNV Loss 21111241
esv25906 CNV Loss 19812545
esv33504 CNV Loss 17666407
nsv471032 CNV Gain 18288195
dgv6259n71 CNV Loss 21882294

Relevant External Links for RAB9BP1 Gene

HapMap Linkage Disequilibrium report
RAB9BP1

Disorders for RAB9BP1 Gene

Relevant External Links for RAB9BP1

Genetic Association Database (GAD)
RAB9BP1
genes like me logo Genes that share disorders with RAB9BP1: view

No data available for UniProtKB/Swiss-Prot for RAB9BP1 Gene

Publications for RAB9BP1 Gene

  1. Cloning and mapping of human Rab7 and Rab9 cDNA sequences and identification of a Rab9 pseudogene. (PMID: 9126495) Davies J.P. … Ioannou Y.A. (Genomics 1997) 2 3
  2. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low S.K. … Nakamura Y. (Cancer Sci. 2013) 3
  3. Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese. (PMID: 24165912) He J. … Gu D. (Circ Cardiovasc Genet 2013) 3
  4. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 49
  5. Genome-wide association study of personality traits in bipolar patients. (PMID: 21368711) Alliey-Rodriguez N. … Gershon E.S. (Psychiatr. Genet. 2011) 49

Products for RAB9BP1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RAB9BP1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RAB9BP1
    • Block miRNA regulation of RAB9BP1 using miScript Target Protectors

    Sources for RAB9BP1 Gene

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