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Aliases for RAB9A Gene

Aliases for RAB9A Gene

  • RAB9A, Member RAS Oncogene Family 2 3 5
  • RAB9, Member RAS Oncogene Family 2 3
  • RAB9 3 4
  • Ras-Related Protein Rab-9A 3

External Ids for RAB9A Gene

Previous HGNC Symbols for RAB9A Gene

  • RAB9

Previous GeneCards Identifiers for RAB9A Gene

  • GC0XP012946
  • GC0XP012527
  • GC0XP013068
  • GC0XP013466
  • GC0XP013617
  • GC0XP011465

Summaries for RAB9A Gene

GeneCards Summary for RAB9A Gene

RAB9A (RAB9A, Member RAS Oncogene Family) is a Protein Coding gene. Among its related pathways are Vesicle-mediated transport and Sertoli-Sertoli Cell Junction Dynamics. GO annotations related to this gene include GTP binding and GDP binding. An important paralog of this gene is RAB9B.

UniProtKB/Swiss-Prot for RAB9A Gene

  • Involved in the transport of proteins between the endosomes and the trans Golgi network. Involved in the recruitment of SGSM2 to melanosomes and is required for the proper trafficking of melanogenic enzymes TYR, TYRP1 and DCT/TYRP2 to melanosomes in melanocytes.

Gene Wiki entry for RAB9A Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB9A Gene

Genomics for RAB9A Gene

Regulatory Elements for RAB9A Gene

Enhancers for RAB9A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF013647 1.3 FANTOM5 Ensembl ENCODE 14.9 -41.2 -41202 1.8 PKNOX1 ATF1 ARNT CREB3L1 ELK1 GATA2 FOS JUNB NCOA1 TSHZ1 TCEANC RAB9A RN7SKP20
GH0XF013648 0.6 ENCODE 13.2 -40.1 -40057 0.2 RAB9A TCEANC RN7SKP20
GH0XF013646 0.2 ENCODE 13.2 -42.9 -42905 0.2 ZNF263 CTCF ZNF654 RNF2 ZNF175 TRIM22 REST RAD21 ZNF324 ZFP69B RAB9A TCEANC RN7SKP20
GH0XF013650 0.4 ENCODE 13.2 -42.8 -42814 0.0 ZNF263 CTCF ZNF654 RNF2 ZNF175 TRIM22 REST RAD21 ZNF324 ZFP69B RAB9A TCEANC RN7SKP20
GH0XF013720 0.9 Ensembl ENCODE 13 +32.7 32678 3.2 SCRT1 ZNF362 INSM2 TSHZ1 ZEB2 ZNF664 ZNF366 GLIS1 MLLT1 PRDM1 TRAPPC2 RAB9A OFD1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RAB9A on UCSC Golden Path with GeneCards custom track

Promoters for RAB9A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000475719 679 2801 WRNIP1 SIN3A DMAP1 ZNF48 YY1 GLIS2 KLF7 SP3 ZHX2 TSHZ1

Genomic Location for RAB9A Gene

Chromosome:
X
Start:
13,689,121 bp from pter
End:
13,710,506 bp from pter
Size:
21,386 bases
Orientation:
Plus strand

Genomic View for RAB9A Gene

Genes around RAB9A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB9A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB9A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB9A Gene

Proteins for RAB9A Gene

  • Protein details for RAB9A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P51151-RAB9A_HUMAN
    Recommended name:
    Ras-related protein Rab-9A
    Protein Accession:
    P51151
    Secondary Accessions:
    • A8K390
    • Q6ICN1

    Protein attributes for RAB9A Gene

    Size:
    201 amino acids
    Molecular mass:
    22838 Da
    Quaternary structure:
    • Interacts (preferentially in its GTP-bound form) with GCC2 (via its GRIP domain) (PubMed:18243103, PubMed:16885419). Interacts (GTP-bound form) with SGSM1; the GDP-bound form has much lower affinity for SGSM1 (PubMed:22637480). Interacts with SGSM2 (PubMed:21808068). The GTP-bound form but not the GDP-bound form interacts with HPS4 and BLOC-3 complex (heterodimer of HPS1 and HPS4) but does not interact with HPS1 alone (PubMed:20048159).

    Three dimensional structures from OCA and Proteopedia for RAB9A Gene

neXtProt entry for RAB9A Gene

Post-translational modifications for RAB9A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RAB9A Gene

No data available for DME Specific Peptides for RAB9A Gene

Domains & Families for RAB9A Gene

Gene Families for RAB9A Gene

Protein Domains for RAB9A Gene

Suggested Antigen Peptide Sequences for RAB9A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P51151

UniProtKB/Swiss-Prot:

RAB9A_HUMAN :
  • Belongs to the small GTPase superfamily. Rab family.
Family:
  • Belongs to the small GTPase superfamily. Rab family.
genes like me logo Genes that share domains with RAB9A: view

Function for RAB9A Gene

Molecular function for RAB9A Gene

UniProtKB/Swiss-Prot Function:
Involved in the transport of proteins between the endosomes and the trans Golgi network. Involved in the recruitment of SGSM2 to melanosomes and is required for the proper trafficking of melanogenic enzymes TYR, TYRP1 and DCT/TYRP2 to melanosomes in melanocytes.

Gene Ontology (GO) - Molecular Function for RAB9A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003924 GTPase activity IDA,TAS 15263003
GO:0005515 protein binding IPI 18243103
GO:0005525 GTP binding IDA 15263003
GO:0019003 GDP binding IDA 15263003
genes like me logo Genes that share ontologies with RAB9A: view
genes like me logo Genes that share phenotypes with RAB9A: view

Animal Model Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for RAB9A

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RAB9A Gene

Localization for RAB9A Gene

Subcellular locations from UniProtKB/Swiss-Prot for RAB9A Gene

Cell membrane; Lipid-anchor; Cytoplasmic side. Endoplasmic reticulum membrane. Golgi apparatus membrane. Late endosome. Cytoplasmic vesicle, phagosome membrane; Lipid-anchor; Cytoplasmic side. Cytoplasmic vesicle, phagosome. Cytoplasmic vesicle membrane. Melanosome. Note=Colocalizes with OSBPL1A at the late endosome (PubMed:16176980). Recruited to phagosomes containing S.aureus or M.tuberculosis (PubMed:21255211). {ECO:0000269 PubMed:16176980, ECO:0000269 PubMed:21255211}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RAB9A Gene COMPARTMENTS Subcellular localization image for RAB9A gene
Compartment Confidence
endosome 5
extracellular 5
lysosome 5
vacuole 5
cytosol 4
endoplasmic reticulum 4
golgi apparatus 4
plasma membrane 3
nucleus 2
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for RAB9A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005764 lysosome IDA 15078902
GO:0005768 endosome IEA --
GO:0005770 late endosome IDA 15078902
GO:0005783 endoplasmic reticulum IEA --
genes like me logo Genes that share ontologies with RAB9A: view

Pathways & Interactions for RAB9A Gene

genes like me logo Genes that share pathways with RAB9A: view

Gene Ontology (GO) - Biological Process for RAB9A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0007264 small GTPase mediated signal transduction IEA --
GO:0015031 protein transport IEA --
GO:0032880 regulation of protein localization IMP 18787122
GO:0042147 retrograde transport, endosome to Golgi IBA --
genes like me logo Genes that share ontologies with RAB9A: view

No data available for SIGNOR curated interactions for RAB9A Gene

Drugs & Compounds for RAB9A Gene

(3) Drugs for RAB9A Gene - From: DrugBank and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Benzoic Acid Approved Pharma Target 7
Guanosine diphosphate Experimental Pharma Target 0

(3) Additional Compounds for RAB9A Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with RAB9A: view

Transcripts for RAB9A Gene

Unigene Clusters for RAB9A Gene

RAB9A, member RAS oncogene family:
Representative Sequences:

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for RAB9A

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RAB9A Gene

No ASD Table

Relevant External Links for RAB9A Gene

GeneLoc Exon Structure for
RAB9A
ECgene alternative splicing isoforms for
RAB9A

Expression for RAB9A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RAB9A Gene

Protein differential expression in normal tissues from HIPED for RAB9A Gene

This gene is overexpressed in Peripheral blood mononuclear cells (10.4) and Bone (9.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for RAB9A Gene



Protein tissue co-expression partners for RAB9A Gene

NURSA nuclear receptor signaling pathways regulating expression of RAB9A Gene:

RAB9A

SOURCE GeneReport for Unigene cluster for RAB9A Gene:

Hs.495704
genes like me logo Genes that share expression patterns with RAB9A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RAB9A Gene

Orthologs for RAB9A Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RAB9A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RAB9A 34 35
  • 100 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia RAB9A 35
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 97 (a)
OneToMany
-- 35
  • 80 (a)
OneToMany
dog
(Canis familiaris)
Mammalia RAB9A 34 35
  • 93.7 (n)
rat
(Rattus norvegicus)
Mammalia Rab9a 34
  • 91.38 (n)
cow
(Bos Taurus)
Mammalia RAB9A 34 35
  • 91.04 (n)
mouse
(Mus musculus)
Mammalia Rab9 34 16 35
  • 90.38 (n)
chicken
(Gallus gallus)
Aves RAB9A 34 35
  • 83.75 (n)
lizard
(Anolis carolinensis)
Reptilia RAB9A 35
  • 94 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rab9a 34
  • 78.44 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.17219 34
zebrafish
(Danio rerio)
Actinopterygii rab9a 34 35
  • 72.8 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG9994 36
  • 55 (a)
Rab7 36
  • 55 (a)
Rab9 35
  • 40 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YPT7 35
  • 48 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 55 (a)
OneToMany
Species where no ortholog for RAB9A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RAB9A Gene

ENSEMBL:
Gene Tree for RAB9A (if available)
TreeFam:
Gene Tree for RAB9A (if available)

Paralogs for RAB9A Gene

Paralogs for RAB9A Gene

genes like me logo Genes that share paralogs with RAB9A: view

Variants for RAB9A Gene

Sequence variations from dbSNP and Humsavar for RAB9A Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs10699224 -- 13,693,177(+) TGTTA(-/GTTA)AGCAG intron-variant
rs10856516 -- 13,701,612(+) TGTCA(A/G)TTACA intron-variant
rs10856517 -- 13,701,645(+) GAGGC(A/G)CGCAC intron-variant
rs112063336 -- 13,689,967(+) ATTGC(-/T)TTTTT intron-variant
rs112346655 -- 13,699,985(+) AGTCT(C/G)ACTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RAB9A Gene

Variant ID Type Subtype PubMed ID
dgv2224e212 CNV loss 25503493
dgv2225e212 CNV gain 25503493
esv3576776 CNV gain 25503493
nsv528634 CNV gain 19592680

Variation tolerance for RAB9A Gene

Residual Variation Intolerance Score: 30.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.03; 0.66% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RAB9A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB9A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RAB9A Gene

Disorders for RAB9A Gene

Relevant External Links for RAB9A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAB9A

No disorders were found for RAB9A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB9A Gene

Publications for RAB9A Gene

  1. Cloning and mapping of human Rab7 and Rab9 cDNA sequences and identification of a Rab9 pseudogene. (PMID: 9126495) Davies J.P. … Ioannou Y.A. (Genomics 1997) 2 3 4 22 64
  2. RUTBC2 protein, a Rab9A effector and GTPase-activating protein for Rab36. (PMID: 22637480) Nottingham R.M. … Pfeffer S.R. (J. Biol. Chem. 2012) 3 4 64
  3. Rab GTPases regulating phagosome maturation are differentially recruited to mycobacterial phagosomes. (PMID: 21255211) Seto S. … Koide Y. (Traffic 2011) 3 4 64
  4. RUTBC1 protein, a Rab9A effector that activates GTP hydrolysis by Rab32 and Rab33B proteins. (PMID: 21808068) Nottingham R.M. … Pfeffer S.R. (J. Biol. Chem. 2011) 3 4 64
  5. Assembly of the biogenesis of lysosome-related organelles complex-3 (BLOC-3) and its interaction with Rab9. (PMID: 20048159) Kloer D.P. … Bonifacino J.S. (J. Biol. Chem. 2010) 3 4 64

Products for RAB9A Gene

Sources for RAB9A Gene

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