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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RAB7B Gene

protein-coding   GIFtS: 38
GCID: GC01U901021

RAB7B, member RAS oncogene family
 Explore 3 diseases affiliated with
RAB7B via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for RAB7B    

Aliases
for RAB7B gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
RAB7B, Member RAS Oncogene Family1 2
MGC162121
MGC97261
RAB72
Ras-Related Protein Rab-72
Ras-Related Protein Rab-7b2

External Ids:    HGNC: 305131   Entrez Gene: 3383822   UniProtKB: Q96AH83   

Export aliases for RAB7B gene to outside databases

Previous GC identifer: GC00P1O0000


Summaries
for RAB7B gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
UniProtKB/Swiss-Prot: RAB7B_HUMAN, Q96AH8
Function: Controls vesicular trafficking from endosomes to the trans-Golgi network (TGN). Acts as a negative regulator
of TLR9 signaling and can suppress TLR9-triggered TNFA, IL6, and IFNB production in macrophages by promoting TLR9
lysosomal degradation. Also negatively regulates TLR4 signaling in macrophages by promoting lysosomal degradation of
TLR4. Promotes megakaryocytic differentiation by increasing NF-kappa-B-dependent IL6 production and subsequently
enhancing the association of STAT3 with GATA1. Not involved in the regulation of the EGF- and EGFR degradation pathway

Gene Wiki entry for RAB7B


Genomic Views
for RAB7B gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
 Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for RAB7B
         Other transcription factors

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Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RAB7B


Genomic Location:
Chromosome:1   

Entrez Gene cytogenetic band: 1q32   HGNC cytogenetic band: 1q32

GeneLoc information about chromosome 1        


Proteins
for RAB7B gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: RAB7B_HUMAN, Q96AH8 (See protein sequence)
Recommended Name: Ras-related protein Rab-7b  
Size: 199 amino acids; 22511 Da
Subcellular location: Late endosome. Lysosome. Golgi apparatus, trans-Golgi network. Golgi apparatus. Cytoplasmic
vesicle, phagosome. Cytoplasmic vesicle, phagosome membrane; Lipid-anchor; Cytoplasmic side (By similarity).
Note=Recruited to phagosomes containing S.aureus or M.tuberculosis

Explore the universe of human proteins at neXtProt for RAB7B: NX_Q96AH8

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96AH8

    • RAB7B Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_001157994.1  NP_796377.3  

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    Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005764lysosome IDA--
    GO:0005770late endosome IDA--
    GO:0005794Golgi apparatus IDA--
    GO:0005802trans-Golgi network IDA--
    GO:0030670phagocytic vesicle membrane IEA--


    RAB7B for ontologies           About GeneDecksing



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    Protein Domains /
    Families
    for RAB7B gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    RAB7B for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR005225 Small_GTP-bd_dom
     IPR001806 Small_GTPase
     IPR003579 Small_GTPase_Rab_type

    Graphical View of Domain Structure for InterPro Entry Q96AH8

    ProtoNet protein and cluster: Q96AH8

    1 Blocks protein family: IPB001806 Transforming protein P21 RAS signature

    UniProtKB/Swiss-Prot: RAB7B_HUMAN, Q96AH8
    Similarity: Belongs to the small GTPase superfamily. Rab family


    Function
    for RAB7B gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: RAB7B_HUMAN, Q96AH8
    Function: Controls vesicular trafficking from endosomes to the trans-Golgi network (TGN). Acts as a negative regulator
    of TLR9 signaling and can suppress TLR9-triggered TNFA, IL6, and IFNB production in macrophages by promoting TLR9
    lysosomal degradation. Also negatively regulates TLR4 signaling in macrophages by promoting lysosomal degradation of
    TLR4. Promotes megakaryocytic differentiation by increasing NF-kappa-B-dependent IL6 production and subsequently
    enhancing the association of STAT3 with GATA1. Not involved in the regulation of the EGF- and EGFR degradation pathway

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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005525GTP binding IEA--


    RAB7B for ontologies           About GeneDecksing



    Pathways & Interactions
    for RAB7B gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Amoebiasis
    		Amoebiasis1.00
    2Phagosome
    		Phagosome1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways



    2         Kegg Pathways  (Kegg details for RAB7B):
        Phagosome
    Amoebiasis


    RAB7B for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RAB7B

    Gene Ontology (GO): 5/8 biological process terms (GO ID links to tree view) (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007264small GTPase mediated signal transduction IEA--
    GO:0015031protein transport IEA--
    GO:0032755positive regulation of interleukin-6 production IMP--
    GO:0034144negative regulation of toll-like receptor 4 signaling pathway ISS--
    GO:0034164negative regulation of toll-like receptor 9 signaling pathway ISS--


    RAB7B for ontologies           About GeneDecksing



    Drugs & Compounds
    for RAB7B gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
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    Transcripts
    for RAB7B gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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    About This Section
    REFSEQ mRNAs for RAB7B gene (2 alternative transcripts): 
    NM_001164522.1  NM_177403.4  

    Unigene Cluster for RAB7B:

    RAB7B, member RAS oncogene family
    Hs.534612  [show with all ESTs]
    Unigene Representative Sequence: NM_177403

    miRNA
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    Additional cDNA sequence: 

    AK122657.1 AK127140.1 AY094596.1 BC007382.1 BC017092.1 

    7 DOTS entries:

    DT.95157154  DT.410687  DT.101981046  DT.444511  DT.70104449  DT.100711980  DT.40124041 

    Expression
    for RAB7B gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RAB7B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CAGCAGCTTG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    RAB7B expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    Embryoid bodies (Two-step protocol fo...)
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See RAB7B Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RAB7B

    SOURCE GeneReport for Unigene cluster: Hs.534612

    UniProtKB/Swiss-Prot: RAB7B_HUMAN, Q96AH8
    Tissue specificity: Expressed in heart, placenta, lung, skeletal muscle and peripheral blood leukocyte

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    In Situ
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    Orthologs
    for RAB7B gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    		   --

    Paralogs
    for RAB7B gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    		  --

    Genomic Variants
    for RAB7B gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section
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    Disorders / Diseases
    for RAB7B gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    RAB7B for disorders           About GeneDecksing

    3 diseases for RAB7B:    About MalaCards
    acute promyelocytic leukemia    insulin resistance    leukemia


    Export disorders for RAB7B gene to outside databases

    Publications
    for RAB7B gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RAB7B gene, integrated from 9 sources (see all 20):
    (articles sorted by number of sources associating them with RAB7B)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Rab7b, a novel lysosome-associated small GTPase, is involved in monocytic differentiation of human acute promyelocytic leukemia cells. (PubMed id 15144907)1, 2, 3, 9 Yang M.... Cao X. (2004)
    2. Small Rab GTPase Rab7b promotes megakaryocytic differ entiation by enhancing IL-6 production and STAT3-GATA-1 association. (PubMed id 20953574)1, 2 He D....Cai Z. (2011)
    3. Rab7b controls trafficking from endosomes to the TGN. (PubMed id 20375062)1, 2 Progida C....Bucci C. (2010)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. Dynamics of Rab7b-dependent transport of sorting recep tors. (PubMed id 22708738)1 Progida C....Bakke O. (2012)
    6. Rab GTPases regulating phagosome maturation are differentially recruited to mycobacterial phagosomes. (PubMed id 21255211)2 Seto S.... Koide Y. (2011)
    7. Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
    8. Rab7b and receptors trafficking. (PubMed id 21057625)2 Bucci C.... Progida C. (2010)
    9. Live cell visualization of the interactions between H IV-1 Gag and the cellular RNA-binding protein Staufen1. (PubMed id 20459747)1 Milev M.P....Mouland A.J. (2010)
    10. Human immunodeficiency virus type-1 gag and host vesic ular trafficking pathways. (PubMed id 20012524)1 Chu H....Spearman P. (2009)

    External Searches for RAB7B gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing RAB7B gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 338382 HGNC: 30513 euGenes: HUgn338382 ECgene: RAB7B
    Kegg: 338382 H-InvDB: RAB7B

    Other Databases showing RAB7B gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing RAB7B gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RAB7B Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for RAB7B Genetics and Cytogenetics in Oncology and Haematology

    Intellectual Property
    for RAB7B gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for RAB7B gene:
    Search GeneIP for patents involving RAB7B

    GeneCards and IP:
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    About This Section

     
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