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Aliases for RAB6D Gene

Aliases for RAB6D Gene

  • RAB6D, Member RAS Oncogene Family 2 3
  • RAB6C-Like 3 5
  • WTH3DI 3 5
  • RAB6CL 3

External Ids for RAB6D Gene

Summaries for RAB6D Gene

GeneCards Summary for RAB6D Gene

RAB6D (RAB6D, Member RAS Oncogene Family) is a Protein Coding gene. An important paralog of this gene is RAB6C.

Additional gene information for RAB6D Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB6D Gene

Genomics for RAB6D Gene

GeneHancer (GH) Regulatory Elements for RAB6D Gene

Promoters and enhancers for RAB6D Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I131363 Promoter 0.9 Ensembl 550.8 +0.2 157 0.4 CTCF ZNF449 NRF1 SP2 ZBTB8A POLR2A SMARCA4 ZNF341 ZNF600 ZBTB26 ENSG00000283303 RAB6D
GH02I131364 Enhancer 0.6 Ensembl 550.8 +0.7 657 0.2 OSR2 GATA3 ZBTB21 ZNF629 CREB1 ZNF518A ATF2 SPI1 EZH2 ENSG00000283303 RAB6D
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RAB6D on UCSC Golden Path with GeneCards custom track

Genomic Locations for RAB6D Gene

Genomic Locations for RAB6D Gene
chr2:131,360,492-131,364,158
(GRCh38/hg38)
Size:
3,667 bases
Orientation:
Minus strand
chr2:132,118,065-132,121,731
(GRCh37/hg19)

Genomic View for RAB6D Gene

Genes around RAB6D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB6D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB6D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB6D Gene

Proteins for RAB6D Gene

  • Protein details for RAB6D Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q53S08
    Recommended name:
    Rab6C
    Protein Accession:
    Q53S08

    Protein attributes for RAB6D Gene

    Size:
    254 amino acids
    Molecular mass:
    28242 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RAB6D Gene

Post-translational modifications for RAB6D Gene

No Post-translational modifications

Other Protein References for RAB6D Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RAB6D Gene

Domains & Families for RAB6D Gene

Gene Families for RAB6D Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for RAB6D Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RAB6D: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAB6D Gene

Function for RAB6D Gene

Gene Ontology (GO) - Molecular Function for RAB6D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005525 GTP binding IEA --
genes like me logo Genes that share ontologies with RAB6D: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAB6D Gene

Localization for RAB6D Gene

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAB6D Gene

Pathways & Interactions for RAB6D Gene

SuperPathways for RAB6D Gene

No Data Available

Interacting Proteins for RAB6D Gene

Gene Ontology (GO) - Biological Process for RAB6D Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAB6D Gene

Drugs & Compounds for RAB6D Gene

No Compound Related Data Available

Transcripts for RAB6D Gene

mRNA/cDNA for RAB6D Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RAB6D Gene

No ASD Table

Relevant External Links for RAB6D Gene

GeneLoc Exon Structure for
RAB6D
ECgene alternative splicing isoforms for
RAB6D

Expression for RAB6D Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAB6D Gene

Orthologs for RAB6D Gene

Evolution for RAB6D Gene

ENSEMBL:
Gene Tree for RAB6D (if available)
TreeFam:
Gene Tree for RAB6D (if available)

No data available for Orthologs for RAB6D Gene

Paralogs for RAB6D Gene

Paralogs for RAB6D Gene

genes like me logo Genes that share paralogs with RAB6D: view

Variants for RAB6D Gene

Sequence variations from dbSNP and Humsavar for RAB6D Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1003672153 -- 131,364,083(-) G/T 5_prime_UTR_variant
rs1005653017 -- 131,361,270(-) C/T 3_prime_UTR_variant
rs1006169203 -- 131,366,059(-) AAAGAA/AA upstream_transcript_variant
rs1006614204 -- 131,365,884(-) AAAAAA/AAAAAAA upstream_transcript_variant
rs1007510626 -- 131,360,481(-) CAAACA/CA downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RAB6D Gene

Variant ID Type Subtype PubMed ID
dgv2032n106 OTHER inversion 24896259
dgv4075n100 CNV gain 25217958
dgv4077n100 CNV gain 25217958
dgv4078n100 CNV gain 25217958
dgv4079n100 CNV loss 25217958
dgv4080n100 CNV gain 25217958
dgv476n27 CNV loss 19166990
dgv7084n54 CNV loss 21841781
esv2670824 CNV deletion 23128226
esv27354 CNV gain+loss 19812545
esv2759092 CNV gain+loss 17122850
esv2760576 CNV gain+loss 21179565
esv34412 CNV gain 17911159
esv34704 CNV gain 17911159
esv3575300 CNV gain 25503493
esv3584079 CNV loss 25503493
esv3592474 CNV loss 21293372
esv3592475 CNV gain 21293372
esv3893359 CNV gain+loss 25118596
nsv1004646 CNV loss 25217958
nsv1014682 CNV loss 25217958
nsv1014723 CNV loss 25217958
nsv10180 CNV loss 18304495
nsv1147463 OTHER inversion 26484159
nsv428404 CNV loss 18775914
nsv459396 CNV gain 19166990
nsv459407 CNV loss 19166990
nsv470486 CNV loss 18288195
nsv520930 CNV gain 19592680
nsv522712 CNV gain 19592680
nsv524021 CNV loss 19592680
nsv583140 CNV gain 21841781
nsv583142 CNV loss 21841781
nsv583143 CNV gain+loss 21841781
nsv7327 OTHER inversion 18451855
nsv818082 CNV gain 17921354
nsv979122 CNV duplication 23825009
nsv998189 CNV loss 25217958
nsv998424 CNV loss 25217958

Additional Variant Information for RAB6D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB6D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAB6D Gene

Disorders for RAB6D Gene

No disorders were found for RAB6D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB6D Gene

Publications for RAB6D Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Screening for target Rabs of TBC (Tre-2/Bub2/Cdc16) domain-containing proteins based on their Rab-binding activity. (PMID: 16923123) Itoh T … Fukuda M (Genes to cells : devoted to molecular & cellular mechanisms 2006) 3 58

Products for RAB6D Gene

Sources for RAB6D Gene

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