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Aliases for RAB6C Gene

Aliases for RAB6C Gene

  • RAB6C, Member RAS Oncogene Family 2 3 5
  • Rab6-Like Protein WTH3 3 4
  • WTH3 3 4
  • Ras-Related Protein Rab-6C 3

External Ids for RAB6C Gene

Previous GeneCards Identifiers for RAB6C Gene

  • GC02P128038
  • GC02M130298
  • GC02P130643
  • GC02M132331
  • GC02P130831
  • GC02M131954
  • GC02P130454
  • GC02U900801
  • GC11M073065
  • GC02P130737
  • GC02P123046

Summaries for RAB6C Gene

GeneCards Summary for RAB6C Gene

RAB6C (RAB6C, Member RAS Oncogene Family) is a Protein Coding gene. Among its related pathways are Sertoli-Sertoli Cell Junction Dynamics. GO annotations related to this gene include GTP binding and GTPase activity. An important paralog of this gene is WTH3DI.

UniProtKB/Swiss-Prot for RAB6C Gene

  • May be involved in the regulation of centrosome duplication and cell cycle progression.

Gene Wiki entry for RAB6C Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB6C Gene

Genomics for RAB6C Gene

Regulatory Elements for RAB6C Gene

Enhancers for RAB6C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G129957 0.7 ENCODE 0.3 -21.6 -21570 0.2 PKNOX1 SIN3A RAD21 CTBP1 GATA3 FOS RCOR1 HCFC1 CHD1 ZHX2 RPL22P7 RAB6C
GH02G129958 0.6 ENCODE 0.3 -21.9 -21860 0.2 ZNF217 GATA3 HCFC1 ZHX2 SIN3A CUX1 RPL22P7 RAB6C
GH02G129959 0.5 ENCODE 0.3 -20.8 -20750 0.1 GATA3 ZNF512 FOXA1 FAR2P2 RPL22P7 RAB6C
GH02G129955 0.2 ENCODE 0.3 -23.6 -23636 0.7 RAB6C-AS1 RPL22P7 RAB6C
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RAB6C on UCSC Golden Path with GeneCards custom track

Promoters for RAB6C Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000123059 38 201 CTCF SIN3A ZNF2 HIC1 GLIS2 ZNF366 POLR2A ZNF600 PRDM10 ZBTB20

Genomic Location for RAB6C Gene

Chromosome:
2
Start:
129,979,662 bp from pter
End:
129,982,738 bp from pter
Size:
3,077 bases
Orientation:
Plus strand

Genomic View for RAB6C Gene

Genes around RAB6C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB6C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB6C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB6C Gene

Proteins for RAB6C Gene

  • Protein details for RAB6C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H0N0-RAB6C_HUMAN
    Recommended name:
    Ras-related protein Rab-6C
    Protein Accession:
    Q9H0N0
    Secondary Accessions:
    • Q53RU3
    • Q6FIF7
    • Q9P128

    Protein attributes for RAB6C Gene

    Size:
    254 amino acids
    Molecular mass:
    28355 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • Previously reported to exhibit GTP-binding affinity comparable to that of RAB6A (PubMed:16103095). In contrast (PubMed:20064528) concludes that RAB6C is an inefficient GTP-binding.
    • Primate-specific retrogene derived from isoform 2 of RAB6A transcript.

neXtProt entry for RAB6C Gene

Post-translational modifications for RAB6C Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RAB6C Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RAB6C Gene

Domains & Families for RAB6C Gene

Gene Families for RAB6C Gene

Protein Domains for RAB6C Gene

Suggested Antigen Peptide Sequences for RAB6C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H0N0

UniProtKB/Swiss-Prot:

RAB6C_HUMAN :
  • Belongs to the small GTPase superfamily. Rab family.
Family:
  • Belongs to the small GTPase superfamily. Rab family.
genes like me logo Genes that share domains with RAB6C: view

Function for RAB6C Gene

Molecular function for RAB6C Gene

UniProtKB/Swiss-Prot Function:
May be involved in the regulation of centrosome duplication and cell cycle progression.

Gene Ontology (GO) - Molecular Function for RAB6C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003924 GTPase activity IDA 10455022
GO:0005525 GTP binding IEA --
genes like me logo Genes that share ontologies with RAB6C: view
genes like me logo Genes that share phenotypes with RAB6C: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RAB6C Gene

Localization for RAB6C Gene

Subcellular locations from UniProtKB/Swiss-Prot for RAB6C Gene

Nucleus. Cytoplasm. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RAB6C gene
Compartment Confidence
cytoskeleton 5
nucleus 4
cytosol 4
golgi apparatus 4

Gene Ontology (GO) - Cellular Components for RAB6C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IC 10455022
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IEA --
GO:0005794 Golgi apparatus IDA --
GO:0005813 centrosome IDA 20064528
genes like me logo Genes that share ontologies with RAB6C: view

Pathways & Interactions for RAB6C Gene

genes like me logo Genes that share pathways with RAB6C: view

Pathways by source for RAB6C Gene

1 Qiagen pathway for RAB6C Gene

Gene Ontology (GO) - Biological Process for RAB6C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000278 mitotic cell cycle IMP 20064528
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IBA --
GO:0006891 intra-Golgi vesicle-mediated transport IBA --
GO:0007264 small GTPase mediated signal transduction TAS 10455022
GO:0010824 regulation of centrosome duplication IMP 20064528
genes like me logo Genes that share ontologies with RAB6C: view

No data available for SIGNOR curated interactions for RAB6C Gene

Drugs & Compounds for RAB6C Gene

No Compound Related Data Available

Transcripts for RAB6C Gene

mRNA/cDNA for RAB6C Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RAB6C Gene

No ASD Table

Relevant External Links for RAB6C Gene

GeneLoc Exon Structure for
RAB6C
ECgene alternative splicing isoforms for
RAB6C

Expression for RAB6C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAB6C Gene

Protein differential expression in normal tissues from HIPED for RAB6C Gene

This gene is overexpressed in Bone (19.2), Adipocyte (18.8), and Pancreas (8.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for RAB6C Gene



NURSA nuclear receptor signaling pathways regulating expression of RAB6C Gene:

RAB6C

mRNA Expression by UniProt/SwissProt for RAB6C Gene:

Q9H0N0-RAB6C_HUMAN
Tissue specificity: Highest levels are found in fetal and adult brain, prostate, testis and spinal cord. Undetectable expression in adrenal gland, skeletal muscle, bone marrow, fetal, and adult liver, heart, salivary gland, and trachea. Detected in the HEK293, HEK293T, LNCaP, MCF-7, T-47D and EVSA-T cell lines (at protein level).

Evidence on tissue expression from TISSUES for RAB6C Gene

  • Kidney(4.2)
  • Nervous system(3.3)
genes like me logo Genes that share expression patterns with RAB6C: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAB6C Gene

Orthologs for RAB6C Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RAB6C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RAB6C 35
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RAB6C 35
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RAB6C 35
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rab6a 35
  • 90 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 89 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 87 (a)
OneToMany
chicken
(Gallus gallus)
Aves RAB6A 35
  • 92 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 90 (a)
ManyToMany
-- 35
  • 85 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii rab6a 35
  • 89 (a)
ManyToMany
CU694807.1 35
  • 88 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta Rab6 36 35
  • 79 (a)
worm
(Caenorhabditis elegans)
Secernentea rab-6.2 35
  • 74 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YPT6 35
  • 56 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10389 35
  • 78 (a)
OneToMany
Species where no ortholog for RAB6C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for RAB6C Gene

ENSEMBL:
Gene Tree for RAB6C (if available)
TreeFam:
Gene Tree for RAB6C (if available)

Paralogs for RAB6C Gene

Variants for RAB6C Gene

Sequence variations from dbSNP and Humsavar for RAB6C Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000020366 -- 129,978,515(+) GAAAT(A/G)CTTTT intron-variant, upstream-variant-2KB
rs1002242624 -- 129,978,964(+) AGAGA(G/T)ATGAG nc-transcript-variant, upstream-variant-2KB
rs1002708225 -- 129,979,313(+) TTTCT(G/T)TTCAA intron-variant, upstream-variant-2KB
rs1002994759 -- 129,980,616(+) CTCTT(C/T)CGACG upstream-variant-2KB, reference, synonymous-codon
rs1004141129 -- 129,981,336(+) AGGTC(A/G)GAATT upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for RAB6C Gene

Variant ID Type Subtype PubMed ID
dgv4071n100 CNV loss 25217958
esv2751826 CNV gain 17911159
esv2759092 CNV gain+loss 17122850
esv29254 CNV loss 19812545
nsv1003941 CNV gain 25217958
nsv10157 CNV loss 18304495
nsv428403 CNV loss 18775914
nsv459274 CNV loss 19166990
nsv471419 CNV gain 19718026
nsv583046 CNV loss 21841781
nsv821629 CNV loss 15273396
nsv834374 CNV gain 17160897
nsv961879 CNV duplication 23825009

Variation tolerance for RAB6C Gene

Residual Variation Intolerance Score: 77% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.76; 66.57% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RAB6C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB6C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RAB6C Gene

Disorders for RAB6C Gene

Relevant External Links for RAB6C

Genetic Association Database (GAD)
RAB6C
Human Genome Epidemiology (HuGE) Navigator
RAB6C
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAB6C

No disorders were found for RAB6C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB6C Gene

Publications for RAB6C Gene

  1. WTH3 is a direct target of the p53 protein. (PMID: 17426708) Tian K. … Xu H. (Br. J. Cancer 2007) 2 3 4 64
  2. WTH3, a new member of the Rab6 gene family, and multidrug resistance. (PMID: 12007787) Shan J. … Xu H.-P. (Biochim. Biophys. Acta 2002) 3 4 22 64
  3. Rab6c, a new member of the Rab gene family, is involved in drug resistance in MCF7/AdrR cells. (PMID: 11054569) Shan J. … Xu H.-P. (Gene 2000) 2 3 4 64
  4. Assessment of a polymorphism of SDK1 with hypertension in Japanese Individuals. (PMID: 19851296) Oguri M. … Yamada Y. (Am. J. Hypertens. 2010) 3 46 64
  5. RAB6C is a retrogene that encodes a centrosomal protein involved in cell cycle progression. (PMID: 20064528) Young J. … Goud B. (J. Mol. Biol. 2010) 3 4 64

Products for RAB6C Gene

Sources for RAB6C Gene

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