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Aliases & Descriptions for RAB5A
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| | | Descriptions |
|---|
| RAB5A, member RAS oncogene family 2 | | RAS-associated protein RAB5A 2 |
|
| | Search outside databases for aliases for RAB5A genePrevious GC identifers: GC03P019319 GC03M019342 GC03P019838 |
Summaries for RAB5A(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: RAB5A_HUMAN, P20339Function: Required for the fusion of plasma membranes and early endosomesGene Wiki entry for RAB5A |
Genomic Location for RAB5A
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the RAB5A gene 
Entrez Gene cytogenetic band: 3p24-p22 Ensembl cytogenetic band: 3p24.3 HGNC cytogenetic band: 3p24-p22RAB5A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03P019963:
(about GC identifiers)
Start:
|
19,963,749 bp from pter |
End:
|
20,001,647 bp from pter |
Size:
|
37,899 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000003.10 NT_022517.17
| Proteins for RAB5A
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: RAB5A_HUMAN, P20339 (See
protein sequence)Recommended Name: Ras-related protein Rab-5A Size: 215 amino acids; 23659 Da
Subunit: Binds EEA1. Interacts with RIN1 and GAPVD1, which regulate its pathway, probably by acting as a GEF. Interacts with ALS2CL, UNC84B, ZFYVE20 and RUFY1. Interacts with SGSM1 and SGSM3 (By similarity)
Subcellular location: Cell membrane; Lipid-anchor; Cytoplasmic side (By similarity). Early endosome membrane; Lipid-anchor (By similarity). Melanosome. Note=Enriched in stage I melanosomes
PDB structures from and Proteopedia :1N6H (3D)
 1N6I (3D)
 1N6K (3D)
 1N6L (3D)
 1N6N (3D)
 1N6O (3D)
 1N6P (3D)
 1N6R (3D)
 1R2Q (3D)
 1TU3 (3D)
 1TU4 (3D)
 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_004153.2
ENSEMBL proteins: ENSP00000273047
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: RAB5A 
5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
): About this table
Antibodies for RAB5A: Assays for RAB5A: | Protein
Domains/ Families for RAB5A(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P20339
ProtoNet protein and cluster: P20339 1 Blocks protein family: IPB001806 Transforming protein P21 RAS signature
UniProtKB/Swiss-Prot: RAB5A_HUMAN, P20339Similarity: Belongs to the small GTPase superfamily. Rab family | Gene Function for RAB5A
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004162
Applied Biosystems Silencer® siRNAs for RAB5A
Sigma-Aldrich siRNA for RAB5A  Sigma-Aldrich shRNA for RAB5A  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004162                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004162                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004162 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004162
UniProtKB/Swiss-Prot: RAB5A_HUMAN, P20339Function: Required for the fusion of plasma membranes and early endosomesEnzyme regulation: Regulated by guanine nucleotide exchange factors (GEFs) which promote the exchange of bound GDP for free GTPGenatlas biochemistry entry for RAB5A:RAB5A,Ras oncogene superfamily member,located in early endosomes5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for RAB5A
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
4 Sigma-Aldrich "Your Favorite Gene" Pathways for RAB5A (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for RAB5A 
5/61 Interacting proteins for RAB5A (P203391, 2 ENSP000002730473) via UniProtKB, MINT, and/or STRING (see all 61
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for RAB5A(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for RAB5A |
Browse Tocris compounds for RAB5A 10/15 Novoseek chemical compound relationships for RAB5A gene (see all 15
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| phosphatidylinositol 3-phosphate |
76.30 |
7 |
11602609 (4), 14618335 (1), 9697774 (1), 10652369 (1) |
| gdp |
67.38 |
26 |
15702993 (4), 8226909 (3), 18957427 (2), 9748259 (2) (see all 10) |
| gtp |
65.05 |
41 |
17473071 (3), 8226909 (3), 14600265 (2), 8137813 (2) (see all 18) |
| ptdins(3)p |
58.95 |
6 |
10652369 (3), 15998320 (1), 17233583 (1) |
| phosphatidylinositol |
51.64 |
11 |
11252727 (2), 11559593 (2), 10660521 (1), 18523285 (1) (see all 8) |
| guanosine |
37.26 |
1 |
11581220 (1) |
| wortmannin |
36.96 |
12 |
11559593 (5), 18980614 (1), 14521088 (1) |
| mevalonate |
34.39 |
1 |
9703948 (1) |
| mannose 6-phosphate |
27.19 |
2 |
10821869 (1), 11404461 (1) |
| tyrosine |
10.12 |
5 |
15152255 (2), 15601859 (1), 11062256 (1), 18723684 (1) |
About this table
|
Transcripts for RAB5A(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004162
Sigma-Aldrich siRNA for RAB5A  Sigma-Aldrich shRNA for RAB5A  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004162 REFSEQ mRNAs for RAB5A gene: NM_004162.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004162               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004162                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004162                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004162  Additional cDNA sequence: AF464088.1 AF498936.1 AK295992.1 AK309287.1 AK312618.1 BC001267.1 BC018288.1 CR536492.1 CR597533.1 CR625175.1 M28215.1 18 DOTS entries: DT.417369 DT.100827317 DT.120910567 DT.95276985 DT.100827318 DT.95276987 DT.100827322 DT.120910620 DT.75170387 DT.100827325 DT.70103305 DT.95276984 DT.99928106 DT.100827323 DT.120910629 DT.120910585 DT.120910601 DT.95152330 24/264 AceView cDNA sequences (see all 264
):AI139501 BQ232003 AF498936 AI754665 BF512151 BE467569 Z39196 AI080727 BP377470 T27860 AW272383 BX279863 CA391029 BQ720552 AI798565 BC018288 AI421405 AI039442 BX359299 CD678338 AW130909 CR625175 BX356544 AA512889
highest scoring ESTs for RAB5A:M28215 AA031571 AA172035 AA172287 AA219213 AA455069 AA512889 AA514846 AA521005 AA663412 Unigene Cluster for RAB5A: RAB5A, member RAS oncogene family Hs.475663 [show with all ESTs]Unigene Representative Sequence: NM_004162
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for RAB5A (see all 6
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | · | 6c | ^ | 7a | · | 7b | ^ | 8 | ^ | 9 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for RAB5A
1 Ensembl transcript including schematic representation: ENST00000273047
|
Expression for RAB5A
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| RAB5A expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for RAB5A
1 / 2 / 3 6 probe-sets matching RAB5A gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TGTCAGAGAT
SOURCE GeneReport for Unigene cluster: Hs.475663
Expression variation in blood from EXPOLDB for RAB5A |
Orthologs for RAB5A
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for RAB5A gene from 5/18 species (see all 18
)
About this table Species with no ortholog for RAB5A
ENSEMBL Gene Tree for RAB5A | Paralogs for RAB5A(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for RAB5A gene
- RAB5C2 RAB5B2 RAB172
|
SNPs/Variants for RAB5A(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for RAB5A (up to first 250kb)
|
Disorders & Mutations for RAB5A
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 179512
4 Novoseek disease relationships for RAB5A gene
About this table
|
Medical News for RAB5A(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for RAB5A (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/196 PubMed articles for RAB5A gene (see all 196
):- Direct interaction of EEA1 with Rab5b. (PubMed id 10491193)1, 3, 4 Callaghan J.M.... Stenmark H. (1999)
- Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes. (PubMed id 17081065)3, 4 Chi A....Hunt D.F. (2006)
- Rabip4' is an effector of rab5 and rab4 and regulates transport through early endosomes. (PubMed id 14617813)3, 4 Fouraux M.A.... Pruijn G.J.M. (2004)
- ALS2CL, the novel protein highly homologous to the carboxy-terminal half of ALS2, binds to Rab5 and modulates endosome dynamics. (PubMed id 15388334)3, 4 Hadano S.... Ikeda J.E. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- High resolution crystal structures of human Rab5a and five mutants with substitutions in the catalytically important phosphate-binding loop. (PubMed id 12433916)3, 4 Zhu G.... Zhang X.C. (2003)
- Ras-activated endocytosis is mediated by the Rab5 guanine nucleotide exchange activity of RIN1. (PubMed id 11703925)3, 4 Tall G.G.... Horazdovsky B.F. (2001)
- A novel membrane-anchored Rab5 interacting protein required for homotypic endosome fusion. (PubMed id 10818110)3, 4 Hoffenberg S.... Knoll B.J. (2000)
- Rabenosyn-5, a novel Rab5 effector, is complexed with hVPS45 and recruited to endosomes through a FYVE finger domain. (PubMed id 11062261)3, 4 Nielsen E.... Zerial M. (2000)
- Rab geranylgeranyl transferase catalyzes the geranylgeranylation of adjacent cysteines in the small GTPases Rab1A, Rab3A, and Rab5A. (PubMed id 7991565)3, 4 Farnsworth C.C.... Glomset J.A. (1994)
|
Search for RAB5A
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing RAB5A
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing RAB5A
(According to HUGE)
About This Section
| -- |
Specialized Databases showing RAB5A(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for RAB5A(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for RAB5A:

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