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Aliases for RAB40AL Gene

Aliases for RAB40AL Gene

  • RAB40A, Member RAS Oncogene Family-Like 2 3
  • RLGP 3 4 6
  • Ras Like GTPase 2 3
  • Ras-Like GTPase 3 4
  • MRXSMP 3 6
  • SOCS Box Containing Protein RAR2 3
  • Ras-Related Protein Rab-40A-Like 3
  • RAR2 3

External Ids for RAB40AL Gene

Summaries for RAB40AL Gene

Entrez Gene Summary for RAB40AL Gene

  • This gene encodes a member of the Rab40 subfamily of Rab small GTP-binding proteins that contains a C-terminal suppressors of cytokine signaling box. Disruptions in this gene are associated with Duchenne muscular dystrophy. [provided by RefSeq, Apr 2010]

GeneCards Summary for RAB40AL Gene

RAB40AL (RAB40A, Member RAS Oncogene Family-Like) is a Protein Coding gene. Diseases associated with RAB40AL include mental retardation, x-linked, syndromic, martin-probst type and deafness - intellectual disability, martin-probst type. GO annotations related to this gene include GTP binding. An important paralog of this gene is RAB40B.

UniProtKB/Swiss-Prot for RAB40AL Gene

  • May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB40AL Gene

Genomics for RAB40AL Gene

Genomic Location for RAB40AL Gene

Start:
102,937,250 bp from pter
End:
102,938,962 bp from pter
Size:
1,713 bases
Orientation:
Plus strand

Genomic View for RAB40AL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RAB40AL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB40AL Gene

Regulatory Elements for RAB40AL Gene

Proteins for RAB40AL Gene

  • Protein details for RAB40AL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C0E4-RB40L_HUMAN
    Recommended name:
    Ras-related protein Rab-40A-like
    Protein Accession:
    P0C0E4
    Secondary Accessions:
    • Q495H3

    Protein attributes for RAB40AL Gene

    Size:
    278 amino acids
    Molecular mass:
    31239 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RAB40AL Gene

Proteomics data for RAB40AL Gene at MOPED

Post-translational modifications for RAB40AL Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RAB40AL Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RAB40AL Gene

Domains for RAB40AL Gene

Protein Domains for RAB40AL Gene

Suggested Antigen Peptide Sequences for RAB40AL Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P0C0E4

UniProtKB/Swiss-Prot:

RB40L_HUMAN
Domain:
  • The SOCS box domain mediates the interaction with the Elongin BC complex, an adapter module in different E3 ubiquitin ligase complexes.:
    • P0C0E4
  • Contains 1 SOCS box domain.:
    • P0C0E4
Family:
  • Belongs to the small GTPase superfamily. Rab family.:
    • P0C0E4
genes like me logo Genes that share domains with RAB40AL: view

No data available for Gene Families for RAB40AL Gene

Function for RAB40AL Gene

Molecular function for RAB40AL Gene

UniProtKB/Swiss-Prot Function: May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Gene Ontology (GO) - Molecular Function for RAB40AL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003924 GTPase activity IBA --
GO:0005525 GTP binding IEA --
genes like me logo Genes that share ontologies with RAB40AL: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RAB40AL Gene

Localization for RAB40AL Gene

Subcellular locations from UniProtKB/Swiss-Prot for RAB40AL Gene

Cell membrane; Lipid-anchor; Cytoplasmic side. Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RAB40AL Gene COMPARTMENTS Subcellular localization image for RAB40AL gene
Compartment Confidence
mitochondrion 5
plasma membrane 5
cytosol 3
cytoskeleton 1
extracellular 1
nucleus 1

Gene Ontology (GO) - Cellular Components for RAB40AL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005737 cytoplasm IDA 22581972
GO:0005739 mitochondrion IDA 22581972
GO:0005886 plasma membrane IEA --
GO:0010008 endosome membrane IBA --
genes like me logo Genes that share ontologies with RAB40AL: view

Pathways for RAB40AL Gene

SuperPathways for RAB40AL Gene

No Data Available

UniProtKB/Swiss-Prot P0C0E4-RB40L_HUMAN

  • Pathway: Protein modification; protein ubiquitination

Interacting Proteins for RAB40AL Gene

Gene Ontology (GO) - Biological Process for RAB40AL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006184 obsolete GTP catabolic process --
GO:0006886 intracellular protein transport IBA --
GO:0006904 NOT vesicle docking involved in exocytosis IBA --
GO:0006913 nucleocytoplasmic transport --
GO:0007165 signal transduction --
genes like me logo Genes that share ontologies with RAB40AL: view

No data available for Pathways by source for RAB40AL Gene

Transcripts for RAB40AL Gene

mRNA/cDNA for RAB40AL Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RAB40AL Gene

RAB40A, member RAS oncogene family-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAB40AL Gene

No ASD Table

Relevant External Links for RAB40AL Gene

GeneLoc Exon Structure for
RAB40AL
ECgene alternative splicing isoforms for
RAB40AL

Expression for RAB40AL Gene

mRNA expression in normal human tissues for RAB40AL Gene

SOURCE GeneReport for Unigene cluster for RAB40AL Gene Hs.449517

mRNA Expression by UniProt/SwissProt for RAB40AL Gene

P0C0E4-RB40L_HUMAN
Tissue specificity: Expressed in brain, lung, heart, skeletal muscle, kidney and liver. Highest expression in brain. Expressed in fetal brain and kidney.
genes like me logo Genes that share expressions with RAB40AL: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Protein expression for RAB40AL Gene

Orthologs for RAB40AL Gene

This gene was present in the common ancestor of animals.

Orthologs for RAB40AL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RAB40AL 35
  • 99.28 (n)
  • 99.28 (a)
RAB40AL 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RAB40B 36
  • 80 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 57 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Rab40b 36
  • 82 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 4 (a)
OneToMany
chicken
(Gallus gallus)
Aves RAB40B 36
  • 73 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 74 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii rab40b 36
  • 78 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Rab40 36
  • 57 (a)
OneToMany
Species with no ortholog for RAB40AL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RAB40AL Gene

ENSEMBL:
Gene Tree for RAB40AL (if available)
TreeFam:
Gene Tree for RAB40AL (if available)

Paralogs for RAB40AL Gene

Paralogs for RAB40AL Gene

genes like me logo Genes that share paralogs with RAB40AL: view

Variants for RAB40AL Gene

Sequence variations from dbSNP and Humsavar for RAB40AL Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs5945908 -- 102,936,399(+) ATTTC(A/G)TCATC upstream-variant-2KB
rs5945909 -- 102,937,333(+) CCGGG(C/T)AGCCC reference, synonymous-codon
rs5987498 -- 102,936,155(+) ACTGA(G/T)AAGTG upstream-variant-2KB
rs7065679 -- 102,935,779(+) AGCAC(C/T)TCCCT upstream-variant-2KB
rs7876193 -- 102,937,957(+) CTCCC(A/G)CTCCC synonymous-codon, reference

Relevant External Links for RAB40AL Gene

HapMap Linkage Disequilibrium report
RAB40AL
Human Gene Mutation Database (HGMD)
RAB40AL
Locus Specific Mutation Databases (LSDB)
RAB40AL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for RAB40AL Gene

Disorders for RAB40AL Gene

(1) OMIM Diseases for RAB40AL Gene (300405)

UniProtKB/Swiss-Prot

RB40L_HUMAN
  • Mental retardation, X-linked, syndromic, Martin-Probst type (MRXSMP) [MIM:300519]: A rare neurodevelopmental disorder characterized by mental retardation, sensorineural hearing loss, short stature and craniofacial dysmorphisms. Patients also exhibit abnormal teeth, widely spaced nipples, abnormal dermatoglyphics, renal insufficiency, and impaired haematopoiesis. Mental retardation is defined as significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. {ECO:0000269 PubMed:22581972}. Note=The disease is caused by mutations affecting the gene represented in this entry.
genes like me logo Genes that share disorders with RAB40AL: view

Publications for RAB40AL Gene

  1. The Xq22 inversion breakpoint interrupted a novel Ras-like GTPase gene in a patient with Duchenne muscular dystrophy and profound mental retardation. (PMID: 12145744) Saito-Ohara F. … Inazawa J. (Am. J. Hum. Genet. 2002) 3 4 23
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  4. Disruption of RAB40AL function leads to Martin--Probst syndrome, a rare X-linked multisystem neurodevelopmental human disorder. (PMID: 22581972) Bedoyan J.K. … Martin D.M. (J. Med. Genet. 2012) 3 4
  5. Mutation in the X-linked RAB40AL gene (Martin-Probst syndrome) with mental retardation, sensorineural hearing loss, and anomalies of the craniofacies and genitourinary tract: a second case report. (PMID: 24863632) Lee J. … Boles R.G. (Eur. J. Pediatr. 2014) 3

Products for RAB40AL Gene

Sources for RAB40AL Gene

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