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RAB3IL1 Gene

protein-coding GIFtS: 53

GC11M061422

RAB3A interacting protein (rabin3)-like 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
GRAB ^²

Descriptions
RAB3A interacting protein (rabin3)-like 1 ^²
Rab3A-interacting-like protein 1 ^³
Rabin3-like 1 ^³
guanine nucleotide exchange factor for Rab3A ^²

External Ids
HGNC: 9780¹
Entrez Gene: 5866²
UniProtKB: Q8TBN0³
Ensembl: ENSG00000167994⁷

Search outside databases for aliases for RAB3IL1 gene

Previous GC identifers: GC11M064178 GC11M063240 GC11M061915 GC11M061440

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: R3GEF_HUMAN, Q8TBN0

Function: Guanine nucleotide exchange factor (GEF) for Rab3A, a GTPase that regulates synaptic

vesicle exocytosis (By similarity)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the RAB3IL1 gene

Entrez Gene cytogenetic band: 11q12-q13.1 Ensembl cytogenetic band: 11q12.3 HGNC cytogenetic band: 11q12.2

RAB3IL1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure

GeneLoc location for GC11M061422: (about GC identifiers)

Start:	61,421,349 bp from pter
End:	61,444,240 bp from pter
Size:	22,892 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000011.8 NT_033903.7

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: R3GEF_HUMAN, Q8TBN0 (See protein sequence)

Recommended Name: Guanine nucleotide exchange factor for Rab3A

Size: 382 amino acids; 42637 Da

Subunit: Interacts with Rab3A and IHPK1 through the coiled coil domain. This interaction is

competitive. IHPK1 kinase activity is not required for this interaction (By similarity)

Secondary accessions: Q86V32 Q9P1Q8

Alternative splicing: 2 isoforms: Q8TBN0-1 Q8TBN0-2

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_037533.2

ENSEMBL proteins:

ENSP00000378313 ENSP00000301773 ENSP00000334416

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Browse Abcam for Recombinant Proteins
	Human Recombinant Proteins from Abnova (RAB3IL1)

OriGene Purified Recombinant Human Protein: RAB3IL1

Antibodies for RAB3IL1:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for RAB3IL1
	Browse R&D Systems for Antibodies
	Search for antibodies at Abcam and the World's Antibody Gateway (free search engine of over 150 antibody companies)
	Monoclonal and Polyclonal Antibodies from Abnova (RAB3IL1)
	Novus Biologicals Antibody for RAB3IL1

Assays for RAB3IL1:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry Q8TBN0

ProtoNet protein and cluster: Q8TBN0

1 Blocks protein family: IPB011072 Protein kinase PKN/PRK1

UniProtKB/Swiss-Prot: R3GEF_HUMAN, Q8TBN0

Similarity: Belongs to the SEC2 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (RAB3IL1)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_013401

Applied Biosystems Silencer® siRNAs for RAB3IL1

Sigma-Aldrich siRNA for RAB3IL1

Sigma-Aldrich shRNA for RAB3IL1

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for RAB3IL1
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_013401
Myc/DDK tagged cDNA clone in CMV expression vector: NM_013401
untagged cDNA clone in CMV expression vector: NM_013401

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_013401

UniProtKB/Swiss-Prot: R3GEF_HUMAN, Q8TBN0

Function: Guanine nucleotide exchange factor (GEF) for Rab3A, a GTPase that regulates synaptic

vesicle exocytosis (By similarity)

Genatlas biochemistry entry for RAB3IL1:

RAB3A interacting protein (rabin3)-like 1

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005085	guanyl-nucleotide exchange factor activity	IEA	--
GO:0005515	protein binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

4 Interacting proteins for RAB3IL1 (Q8TBN0²) via UniProtKB, MINT, and/or STRING
Interactant Interaction Details
GeneCard External ID(s)
NUDT18 Q6ZVK8² MINT-66392
RAB11A P62491² MINT-66622
RAB3IL1 Q8TBN0² MINT-66492
RAB3IP Q96QF0² MINT-67161
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Enzo Life Sciences drugs & compounds for RAB3IL1

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for RAB3IL1

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (RAB3IL1)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_013401

Sigma-Aldrich siRNA for RAB3IL1

Sigma-Aldrich shRNA for RAB3IL1

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_013401

REFSEQ mRNAs for RAB3IL1 gene:

NM_013401.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_013401

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_013401
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_013401
                                 untagged cDNA clone in CMV expression vector: NM_013401

Additional cDNA sequence:

AF084557.1 BC022239.1 BC051820.1 CR615485.1 CR624851.1

7 DOTS entries:

DT.209035 DT.100776652 DT.455866 DT.100724880 DT.100776645 DT.40317010 DT.92420577

9 AceView cDNA sequences:

NM_013401 AF084557 CR615485 BC022239 CR624851 BX391757 BC051820 CD624991

BX383339

highest scoring ESTs for RAB3IL1:

BC022239 BC051820 AF084557 AL518260 AL552338 BF984202 BG331251 BI752477 BI765652 BM546223

Unigene Cluster for RAB3IL1:

RAB3A interacting protein (rabin3)-like 1

Hs.13759 [show with all ESTs]

Unigene Representative Sequence: NM_013401

GeneLoc Exon Structure

4 Alternative Splicing Database (ASD) splice patterns (SP) for RAB3IL1

ExUns:	1	^	2	^	3	^	4	^	5	^	6	^	7	^	8	^	9	^	10	^	11	^	12a	·	12b	·	12c	·	12d
SP1:																					-
SP2:			-								-										-
SP3:																					-		-
SP4:

About this scheme

ECgene alternative splicing isoforms for RAB3IL1

3 Ensembl transcripts including schematic representations:

ENST00000394836 ENST00000301773 ENST00000335219

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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RAB3IL1 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for RAB3IL1

¹ / ² / ³

3 probe-sets matching RAB3IL1 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
47507_at²^{, 3}	U95-B	1	1.00	1.00	1.00	1.00	AI078157	0.40	1.00	0.76	1
219579_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_013401	0.60	1.00	0.82	1
219579_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks RAB3IL1 for binary patterns associated with the probe-sets selected above

About GeneDecksing

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: TGGGGCCTGG

SOURCE GeneReport for Unigene cluster: Hs.13759

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
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Orthologs for RAB3IL1 gene from 5/9 species (see all 9 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	RAB3IL1¹	--	RAB3A interacting protein (rabin3)-like 1	89.28(n) 89.54(a)	612267 XM_850007.1 XP_855100.1
chimpanzee (Pan troglodytes)	RAB3IL1¹	--	RAB3A interacting protein (rabin3)-like 1	99.38(n) 100(a)	466629 XM_522028.2 XP_522028.2
cow (Bos taurus)	RAB3IL1¹	--	RAB3A interacting protein (rabin3)-like 1	89.44(n) 90.84(a)	614335 NM_001046532.1 NP_001039997.1
rat (Rattus norvegicus)	Rab3il1¹	--	RAB3A interacting protein (rabin3)-like 1	85.37(n) 86.97(a)	171452 NM_134411.1 NP_599238.1
mouse (Mus musculus)	Rab3il1^{1, 5}	19⁵	RAB3A interacting protein (rabin3)-like 1^{1, 5}	84.64(n)¹ 86.13(a)¹	74760¹ NM_144538.2¹ NP_653121.1¹ AA638815⁵ AI115013⁵ (see all 14)

About this table Species with no ortholog for RAB3IL1

ENSEMBL Gene Tree for RAB3IL1

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for RAB3IL1 gene

RAB3IP²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/80 NCBI SNPs in RAB3IL1 are shown (see all 80 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 55)

AB	SNP ID	Valid	Chr 11 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs2521561^1,2	A,C,F,H	61442565(+)	`ACTCaT/Ctcata`	1	--	ng3¹		8		EU EA WA	838
	rs2235093^1,2	A,C,F,H	61421698(-)	`CTTCAC/TAAAGG`	1	--	ut3¹ ese³		4		EU EA WA	412
	rs13966^1,2	A,C,F,H	61421568(+)	`GTGGGC/TGATCT`	1	--	ut3¹		9		MN NA EU EA WA	932
	rs174477^1,2	C,F,H	61432220(-)	`GGCCCA/GAGGCC`	1	Q/R	mis¹ ese³		4		EA WA NA	360
	rs3815045^1,2	C,F,H	61426522(+)	`GTAATA/GGCTTT`	1	H/Y	mis¹		16		EU EA WA NA	1472
--	rs739789^1,2	A,F	61441545(-)	`CTGACT/CGGCCG`	1	--	ut5¹ ese³		1		MN	184
	rs17764935^1,2	F,H	61421333(+)	`GGCGCG/ATGGCC`	1	--	ng5¹		7		NA EU EA WA	532
--	rs7125987^1,2	C	61442539(+)	`GAGGAC/TACATT`	1	--	ng3¹		0	--	--	--	--
	rs174473^1,2	A,C,F,H,O	61428811(+)	`TGCATT/CGTGAA`	1	T/T	syn¹ ese³		6		EA NA	1572
	rs174476^1,2	C,F,H,O	61430694(+)	`ACCAGC/TGTCTT`	1	T/T	syn¹		5		MN EU EA WA	602

About this table

HapMap Linkage Disequilibrium images for RAB3IL1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

4 PubMed articles for RAB3IL1 gene:

Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)³ Rual J.F....Vidal M. (2005)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)⁴ Gerhard D.S....Malek J. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
GRAB: a physiologic guanine nucleotide exchange factor for Rab3A, which interacts with inositol hexakisphosphate kinase. (PubMed id 11516400)³ Luo H.R....Snyder S.H. (2001)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 5866	HGNC: 9780	AceView: RAB3IL1	Ensembl:ENSG00000167994	euGenes: HUgn5866
ECgene: RAB3IL1	H-InvDB: RAB3IL1

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
ATLAS Chromosomes in Cancer entry for RAB3IL1	Genetics and Cytogenetics in Oncology and Haematology

Licensable Technologies for RAB3IL1
(Available from WIS Yeda, Salk, Tufts)

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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for RAB3IL1:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for RAB3IL1-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for RAB3IL1		Antibodies for RAB3IL1
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for RAB3IL1		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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	Antibodies (RAB3IL1)
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	Custom Service for Mouse Mab
	Custom Service for Rabbit Pab from Full-length Protein

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	Tagged/untagged cDNA clones
	Validated SYBR primer pairs
	Purified proteins from HEK293T cells
	Western blot validated antibodies
	shRNA in GFP-retroviral vector

Search Tocris compounds for RAB3IL1

	Drugs for RAB3IL1
	Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies

Antibodies for RAB3IL1

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RAB3IL1 Gene

protein-coding GIFtS: 53

Aliases &
Descriptions
for RAB3IL1

Summaries
for RAB3IL1

Genomic Location
for RAB3IL1

Proteins
for RAB3IL1

Protein Domains/
Families
for RAB3IL1

Gene Function
for RAB3IL1

Pathways & Interactions
for RAB3IL1

Drugs & Compounds
for RAB3IL1

Transcripts
for RAB3IL1

Expression
for RAB3IL1

Orthologs
for RAB3IL1

Paralogs
for RAB3IL1

SNPs/Variants
for RAB3IL1

Disorders & Mutations
for RAB3IL1

Medical News
for RAB3IL1

Publications
for RAB3IL1

Search for RAB3IL1

Genome Databases showing RAB3IL1

Other Databases showing RAB3IL1

Specialized Databases showing RAB3IL1

Licensable Technologies
for RAB3IL1

Services
for RAB3IL1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

RAB3IL1 Gene

protein-coding GIFtS: 53

Aliases & Descriptionsfor RAB3IL1

Summariesfor RAB3IL1

Genomic Locationfor RAB3IL1

Proteinsfor RAB3IL1

Protein Domains/Familiesfor RAB3IL1

Gene Functionfor RAB3IL1

Pathways & Interactionsfor RAB3IL1

Drugs & Compoundsfor RAB3IL1

Transcriptsfor RAB3IL1

Expression for RAB3IL1

Orthologsfor RAB3IL1

Paralogsfor RAB3IL1

SNPs/Variantsfor RAB3IL1

Disorders & Mutationsfor RAB3IL1

Medical Newsfor RAB3IL1

Publicationsfor RAB3IL1

Search for RAB3IL1

Genome Databases showing RAB3IL1

Other Databases showing RAB3IL1

Specialized Databases showing RAB3IL1

Licensable Technologiesfor RAB3IL1

Servicesfor RAB3IL1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for RAB3IL1

Summaries
for RAB3IL1

Genomic Location
for RAB3IL1

Proteins
for RAB3IL1

Protein Domains/
Families
for RAB3IL1

Gene Function
for RAB3IL1

Pathways & Interactions
for RAB3IL1

Drugs & Compounds
for RAB3IL1

Transcripts
for RAB3IL1

Expression
for RAB3IL1

Orthologs
for RAB3IL1

Paralogs
for RAB3IL1

SNPs/Variants
for RAB3IL1

Disorders & Mutations
for RAB3IL1

Medical News
for RAB3IL1

Publications
for RAB3IL1

Licensable Technologies
for RAB3IL1

Services
for RAB3IL1