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RAB36 Gene

protein-coding GIFtS: 57

GC22P021812

RAB36, member RAS oncogene family
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Descriptions
RAB36, member RAS oncogene family ^²
small GTP-binding protein Rab36 ^²

External Ids
HGNC: 9775¹
Entrez Gene: 9609²
UniProtKB: O95755³
Ensembl: ENSG00000100228⁷

Search outside databases for aliases for RAB36 gene

Previous GC identifer: GC22P020186

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: RAB36_HUMAN, O95755

Function: Protein transport. Probably involved in vesicular traffic (By similarity)

Gene Wiki entry for RAB36

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the RAB36 gene

Entrez Gene cytogenetic band: 22q11.22 Ensembl cytogenetic band: 22q11.23 HGNC cytogenetic band: 22q11.22

RAB36 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 22 GeneLoc Exon Structure

GeneLoc location for GC22P021812: (about GC identifiers)

Start:	21,817,513 bp from pter
End:	21,836,531 bp from pter
Size:	19,019 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000022.9 NT_011520.11

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: RAB36_HUMAN, O95755 (See protein sequence)

Recommended Name: Ras-related protein Rab-36

Size: 333 amino acids; 36322 Da

Subcellular location: Golgi apparatus membrane; Lipid-anchor

Secondary accessions: Q2M390 Q7Z4A9 Q9UHP5

Alternative splicing: 2 isoforms: O95755-1 O95755-2

REFSEQ proteins: NP_004905.2

ENSEMBL proteins:

ENSP00000263116 ENSP00000343494

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (RAB36)
	Human Recombinant Proteins from Abnova (RAB36)

OriGene Purified Recombinant Human Protein: RAB36

3 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000139	Golgi membrane	IEA	--
GO:0005794	Golgi apparatus	TAS	9920784
GO:0016020	membrane	IEA	--

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Antibodies for RAB36:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for RAB36
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (RAB36), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (RAB36)
	Novus Biologicals Antibodies for RAB36

Assays for RAB36:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry O95755

ProtoNet protein and cluster: O95755

5 Blocks protein families:

IPB001806 Transforming protein P21 RAS signature

IPB002041 GTP-binding nuclear protein Ran

IPB003577 Ras small GTPase

IPB003578 Ras small GTPase

IPB006688 ADP-ribosylation factor

UniProtKB/Swiss-Prot: RAB36_HUMAN, O95755

Similarity: Belongs to the small GTPase superfamily. Rab family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (RAB36)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (RAB36)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004914

Applied Biosystems Silencer® siRNAs for RAB36

Sigma-Aldrich siRNA for RAB36

Sigma-Aldrich shRNA for RAB36

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_004914
Myc/DDK tagged cDNA clone in CMV expression vector: NM_004914
untagged cDNA clone in CMV expression vector: NM_004914

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_004914

UniProtKB/Swiss-Prot: RAB36_HUMAN, O95755

Function: Protein transport. Probably involved in vesicular traffic (By similarity)

Genatlas biochemistry entry for RAB36:

RAB6,Ras oncogene superfamily member,involved in vesicular trafficking associated with intra-Golgi

transport in a region deleted in malignant rhabdoid tumors but not involved in

tumorigenesis,potential contributor,like RAB6

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000166	nucleotide binding	IEA	--
GO:0005525	GTP binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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2 Interacting proteins for RAB36 (ENSP00000263116³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
RTDR1	ENSP00000216036³	STRING (score=.949)
GNAZ	ENSP00000248996³	STRING (score=.7)

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2 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007264	small GTPase mediated signal transduction	IEA	--
GO:0015031	protein transport	IEA	--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Enzo Life Sciences drugs & compounds for RAB36

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for RAB36

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (RAB36)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (RAB36)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004914

Sigma-Aldrich siRNA for RAB36

Sigma-Aldrich shRNA for RAB36

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_004914

REFSEQ mRNAs for RAB36 gene:

NM_004914.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_004914

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004914
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_004914
                                 untagged cDNA clone in CMV expression vector: NM_004914

Additional cDNA sequence:

AB023061.1 AF133588.1 AK296052.1 AY336745.1 BC017436.1 BC104989.1 BC104991.1 CR456553.1

7 DOTS entries:

DT.91639279 DT.120677454 DT.120677789 DT.101985575 DT.40271688 DT.91956824 DT.92008610

6 AceView cDNA sequences:

NM_004914 CR456553 AB023061 AF133588 AY336745 BC017436

highest scoring ESTs for RAB36:

AB023061 AY336745 BC017436 CR456553 AA219173 AA219484 AA299902 AF133588 AL039919 BE886845

Unigene Cluster for RAB36:

RAB36, member RAS oncogene family

Hs.369557 [show with all ESTs]

Unigene Representative Sequence: AB023061

GeneLoc Exon Structure

2 Ensembl transcripts including schematic representations:

ENST00000263116 ENST00000341989

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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RAB36 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for RAB36

¹ / ² / ³

4 probe-sets matching RAB36 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
39934_at²^{, 3}	U95-A	1	1.00	1.00	0.86	0.90	AB023061	1.00	1.00	1.00	1
69601_g_at²^{, 3}	U95-D	1	1.00	1.00	0.46	1.12	AI741101	0.40	1.00	0.76	1
211471_s_at²^{, 3}	U133-A	1	1.00	1.00	--	--	AF133588	0.60	1.00	0.82	1
211471_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks RAB36 for binary patterns associated with the probe-sets selected above

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: GTGGACTGTC

SOURCE GeneReport for Unigene cluster: Hs.369557
Expression variation in blood from EXPOLDB for RAB36
UniProtKB/Swiss-Prot: RAB36_HUMAN, O95755
Tissue specificity: Ubiquitously present in all tissues examined

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
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Orthologs for RAB36 gene from 5/9 species (see all 9 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	RAB36¹	--	RAB36, member RAS oncogene family	80.72(n) 81.15(a)	607684 XM_844451.1 XP_849544.1
chimpanzee (Pan troglodytes)	RAB36¹	--	RAB36, member RAS oncogene family	99.3(n) 99.1(a)	746871 XM_001169301.1 XP_001169301.1
cow (Bos taurus)	RAB36¹	--	RAB36, member RAS oncogene family	86.77(n) 87.27(a)	518312 XM_596500.3 XP_596500.3
rat (Rattus norvegicus)	Rab36¹	--	RAB36, member RAS oncogene family	85.66(n) 88.3(a)	690407 XM_001071587.1 XP_001071587.1
mouse (Mus musculus)	Rab36^{1, 5}	10⁵	RAB36, member RAS oncogene family^{1, 5}	85.79(n)¹ 88.3(a)¹	76877¹ NM_029781.2¹ NP_084057.1¹ AB232632⁵ AI842953⁵ (see all 17)

About this table Species with no ortholog for RAB36

ENSEMBL Gene Tree for RAB36

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for RAB36 gene

RAB34²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/145 NCBI SNPs in RAB36 are shown (see all 145 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 104)

AB	SNP ID	Valid	Chr 22 pos	Sequence	Recs	AA Chg	Type	More	Recs	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--			--
	rs5759612^1,2	A,C,F,H	21833170(+)	`TCGGCG/AATGGA`	1	D/N	mis¹ ese³		12	EU EA WA NA	1044
	rs4820541^1,2	A,C,F,H	21834405(+)	`AAGGGC/TTATCT`	1	--	ut3¹		7	EU EA WA NA	546
	rs6003527^1,2	A,C,F,H	21836759(+)	`CCTTCA/TTTCCC`	1	--	ng3¹		16	EU EA WA NA	1472
	rs5759619^1,2	A,C,F,H	21834862(+)	`CAGGCT/CCCTGT`	1	--	ut3¹ ese³		4	EU EA WA	412
	rs1807460^1,2	A,C,F,H	21835934(+)	`CTCTGC/TGCCTT`	1	--	ut3¹		14	NS MN EU EA WA NA	1028
	rs5751593^1,2	A,C,F,H	21834658(+)	`ATACAC/TCTCTT`	1	--	ut3¹ ese³		11	EU EA WA NA	980
	rs1476441^1,2	A,C,F,H	21817533(+)	`AGACTC/TCAGGC`	1	--	ut5¹ ese³		10	NA MN EA WA	960
	rs737818^1,2	A,C,F,H	21833756(+)	`ACTGGA/GGCCTG`	1	--	ut3¹ ese³		7	EU EA WA NA	530
	rs5751596^1,2	A,C,F,H	21835804(+)	`CCCCCA/GCCACA`	1	--	ut3¹		4	EU EA WA	418
	rs8142746^1,2	A,C,F,H	21835952(+)	`ACAGCC/TAGTGT`	1	--	ut3¹ ese³		7	EU EA WA NA	560

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HapMap Linkage Disequilibrium images for RAB36 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 605662

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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8 PubMed articles for RAB36 gene:

Cloning and characterization of a novel Rab-family gene, Rab36, within the region at 22q11.2 that is homozygously deleted in malignant rhabdoid tumors. (PubMed id 9920784)^{2, 3, 4} Mori T.... Inazawa J. (1999)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
A genome annotation-driven approach to cloning the human ORFeome. (PubMed id 15461802)^{3, 4} Collins J.E.... Dunham I. (2004)
Isolation of genes from the rhabdoid tumor deletion region in chromosome band 22q11.2. (PubMed id 10607907)^{3, 4} Zhou J.-Y.... Biegel J.A. (2000)
The DNA sequence of human chromosome 22. (PubMed id 10591208)^{2, 3} Dunham I....O'Brien K.P. (1999)
A two-dimensional electrophoresis reference map of human ovary. (PubMed id 16021519)³ Wang L....Sha J.H. (2005)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
DNA cloning using in vitro site-specific recombination. (PubMed id 11076863)³ Hartley J.L....Brasch M.A. (2000)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 9609	HGNC: 9775	AceView: RAB36	Ensembl:ENSG00000100228	euGenes: HUgn9609
ECgene: RAB36	H-InvDB: RAB36

(According to HUGE)
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(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
ATLAS Chromosomes in Cancer entry for RAB36	Genetics and Cytogenetics in Oncology and Haematology

Licensable Technologies for RAB36
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for RAB36:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for RAB36-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for RAB36		Antibodies for RAB36
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for RAB36		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

	Recombinant Proteins (RAB36)
	Antibodies (RAB36)
	Chimera RNAi (RAB36)
	Custom Service for Mouse Mab
	Custom Service for Rabbit Pab from Full-length Protein

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	Recombinant Proteins (RAB36)
	Antibodies (RAB36)

	Tagged/untagged cDNA clones
	Validated SYBR primer pairs
	Purified proteins from HEK293T cells
	Western blot validated antibodies
	shRNA in GFP-retroviral vector

Search Tocris compounds for RAB36

	Drugs for RAB36
	Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies

Antibodies for RAB36

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RAB36 Gene

protein-coding GIFtS: 57

Aliases &
Descriptions
for RAB36

Summaries
for RAB36

Genomic Location
for RAB36

Proteins
for RAB36

Protein Domains/
Families
for RAB36

Gene Function
for RAB36

Pathways & Interactions
for RAB36

Drugs & Compounds
for RAB36

Transcripts
for RAB36

Expression
for RAB36

Orthologs
for RAB36

Paralogs
for RAB36

SNPs/Variants
for RAB36

Disorders & Mutations
for RAB36

Medical News
for RAB36

Publications
for RAB36

Search for RAB36

Genome Databases showing RAB36

Other Databases showing RAB36

Specialized Databases showing RAB36

Licensable Technologies
for RAB36

Services
for RAB36

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

RAB36 Gene

protein-coding GIFtS: 57

Aliases & Descriptionsfor RAB36

Summariesfor RAB36

Genomic Locationfor RAB36

Proteinsfor RAB36

Protein Domains/Familiesfor RAB36

Gene Functionfor RAB36

Pathways & Interactionsfor RAB36

Drugs & Compoundsfor RAB36

Transcriptsfor RAB36

Expression for RAB36

Orthologsfor RAB36

Paralogsfor RAB36

SNPs/Variantsfor RAB36

Disorders & Mutationsfor RAB36

Medical Newsfor RAB36

Publicationsfor RAB36

Search for RAB36

Genome Databases showing RAB36

Other Databases showing RAB36

Specialized Databases showing RAB36

Licensable Technologiesfor RAB36

Servicesfor RAB36

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for RAB36

Summaries
for RAB36

Genomic Location
for RAB36

Proteins
for RAB36

Protein Domains/
Families
for RAB36

Gene Function
for RAB36

Pathways & Interactions
for RAB36

Drugs & Compounds
for RAB36

Transcripts
for RAB36

Expression
for RAB36

Orthologs
for RAB36

Paralogs
for RAB36

SNPs/Variants
for RAB36

Disorders & Mutations
for RAB36

Medical News
for RAB36

Publications
for RAB36

Licensable Technologies
for RAB36

Services
for RAB36