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Aliases for RAB34 Gene

Aliases for RAB34 Gene

  • RAB34, Member RAS Oncogene Family 2 3 5
  • Ras-Related Protein Rab-39 3 4
  • Ras-Related Protein Rah 3 4
  • RAB39 3 4
  • RAH 3 4
  • Nine Amino-Acid Residue-Repeats 4
  • NARR 4

External Ids for RAB34 Gene

Previous GeneCards Identifiers for RAB34 Gene

  • GC17M026887
  • GC17M028941
  • GC17M027186
  • GC17M024065
  • GC17M027041
  • GC17M023250

Summaries for RAB34 Gene

Entrez Gene Summary for RAB34 Gene

  • This gene encodes a protein belonging to the RAB family of proteins, which are small GTPases involved in protein transport. This family member is a Golgi-bound member of the secretory pathway that is involved in the repositioning of lysosomes and the activation of macropinocytosis. Alternative splicing of this gene results in multiple transcript variants. This gene overlaps and shares exon structure with the nine-amino acid residue-repeats (NARR) gene, which encodes a functionally distinct nucleolar protein from a different reading frame. [provided by RefSeq, Jan 2012]

GeneCards Summary for RAB34 Gene

RAB34 (RAB34, Member RAS Oncogene Family) is a Protein Coding gene. Diseases associated with RAB34 include low compliance bladder. Among its related pathways are Sertoli-Sertoli Cell Junction Dynamics. GO annotations related to this gene include GTP binding and guanyl nucleotide binding. An important paralog of this gene is RAB41.

UniProtKB/Swiss-Prot for RAB34 Gene

  • Protein transport. Involved in the redistribution of lysosomes to the peri-Golgi region (By similarity). Plays a role in the maturation of phagosomes that engulf pathogens, such as S.aureus and M.tuberculosis. Plays a role in the fusion of phagosomes with lysosomes.

Gene Wiki entry for RAB34 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB34 Gene

Genomics for RAB34 Gene

Regulatory Elements for RAB34 Gene

Enhancers for RAB34 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RAB34 on UCSC Golden Path with GeneCards custom track

Promoters for RAB34 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RAB34 on UCSC Golden Path with GeneCards custom track

Genomic Location for RAB34 Gene

Chromosome:
17
Start:
28,714,281 bp from pter
End:
28,718,429 bp from pter
Size:
4,149 bases
Orientation:
Minus strand

Genomic View for RAB34 Gene

Genes around RAB34 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB34 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB34 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB34 Gene

Proteins for RAB34 Gene

  • Protein details for RAB34 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DI83-NARR_HUMAN
    Recommended name:
    Ras-related protein Rab-34, isoform NARR
    Protein Accession:
    P0DI83

    Protein attributes for RAB34 Gene

    Size:
    198 amino acids
    Molecular mass:
    21118 Da
    Quaternary structure:
    • May interact with EIF5A and ERF1.

    Alternative splice isoforms for RAB34 Gene

    UniProtKB/Swiss-Prot:
  • Protein details for RAB34 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BZG1-RAB34_HUMAN
    Recommended name:
    Ras-related protein Rab-34
    Protein Accession:
    Q9BZG1
    Secondary Accessions:
    • B4E3A0
    • E9PEJ9
    • Q5BJE6
    • Q8NCJ8
    • Q96AR4

    Protein attributes for RAB34 Gene

    Size:
    259 amino acids
    Molecular mass:
    29044 Da
    Quaternary structure:
    • Interacts with RILP.

    Alternative splice isoforms for RAB34 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RAB34 Gene

Proteomics data for RAB34 Gene at MOPED

Post-translational modifications for RAB34 Gene

No data available for DME Specific Peptides for RAB34 Gene

Domains & Families for RAB34 Gene

Gene Families for RAB34 Gene

Protein Domains for RAB34 Gene

Suggested Antigen Peptide Sequences for RAB34 Gene

Graphical View of Domain Structure for InterPro Entry

Q9BZG1

UniProtKB/Swiss-Prot:

RAB34_HUMAN :
  • Belongs to the small GTPase superfamily. Rab family.
Family:
  • Belongs to the small GTPase superfamily. Rab family.
genes like me logo Genes that share domains with RAB34: view

Function for RAB34 Gene

Molecular function for RAB34 Gene

UniProtKB/Swiss-Prot Function:
Protein transport. Involved in the redistribution of lysosomes to the peri-Golgi region (By similarity). Plays a role in the maturation of phagosomes that engulf pathogens, such as S.aureus and M.tuberculosis. Plays a role in the fusion of phagosomes with lysosomes.
genes like me logo Genes that share phenotypes with RAB34: view

Animal Models for RAB34 Gene

MGI Knock Outs for RAB34:

Animal Model Products

  • Taconic Biosciences Mouse Models for RAB34

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for RAB34 Gene

Localization for RAB34 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RAB34 Gene

Nucleus. Nucleus, nucleolus. Note=Colocalizes with rDNA clusters.
Cytoplasm. Golgi apparatus. Cytoplasmic vesicle, phagosome. Cytoplasmic vesicle, phagosome membrane; Lipid-anchor; Cytoplasmic side. Note=Recruited to phagosomes containing S.aureus or M.tuberculosis.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RAB34 Gene COMPARTMENTS Subcellular localization image for RAB34 gene
Compartment Confidence
extracellular 5
golgi apparatus 5
nucleus 4
cytosol 3
endosome 2
lysosome 2
vacuole 2

Gene Ontology (GO) - Cellular Components for RAB34 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0031985 Golgi cisterna IDA 17881736
GO:0048471 perinuclear region of cytoplasm IDA 16138900
genes like me logo Genes that share ontologies with RAB34: view

Pathways & Interactions for RAB34 Gene

genes like me logo Genes that share pathways with RAB34: view

Pathways by source for RAB34 Gene

1 Qiagen pathway for RAB34 Gene

Interacting Proteins for RAB34 Gene

Selected Interacting proteins: Q9BZG1-RAB34_HUMAN for RAB34 Gene via I2D

Gene Ontology (GO) - Biological Process for RAB34 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006886 intracellular protein transport IEA --
GO:0007264 small GTPase mediated signal transduction IEA --
GO:0019882 antigen processing and presentation IMP 19717423
GO:0032418 lysosome localization IDA 17881736
GO:0090385 phagosome-lysosome fusion IMP 21255211
genes like me logo Genes that share ontologies with RAB34: view

No data available for SIGNOR curated interactions for RAB34 Gene

Drugs & Compounds for RAB34 Gene

No Compound Related Data Available

Transcripts for RAB34 Gene

Unigene Clusters for RAB34 Gene

RAB34, member RAS oncogene family:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAB34 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c · 2d · 2e · 2f · 2g · 2h · 2i · 2j · 2k · 2l ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ·
SP1: - - - - - - - - - - - -
SP2: - - - -
SP3: - - - -
SP4: - - - -
SP5: - - - - - - - - - - - -
SP6: - - - - -
SP7: - - - -
SP8: - - - - - - - -
SP9: - - - - - - - - - - - -
SP10: - - - - - -
SP11: - - - - -
SP12: - - - - - - - - - - - - - - - -
SP13: - - - - - - - - - - - -
SP14: - - - - - -
SP15: - -
SP16: - - - -
SP17: - - -
SP18: - - - - - - - - -
SP19:
SP20:
SP21: - - - - - - - -

ExUns: 8c ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b · 12c · 12d
SP1:
SP2:
SP3: - -
SP4: - - - -
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:
SP19:
SP20:
SP21:

Relevant External Links for RAB34 Gene

GeneLoc Exon Structure for
RAB34
ECgene alternative splicing isoforms for
RAB34

Expression for RAB34 Gene

mRNA expression in normal human tissues for RAB34 Gene

Protein differential expression in normal tissues from HIPED for RAB34 Gene

This gene is overexpressed in Breast (17.1) and Uterus (15.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for RAB34 Gene



SOURCE GeneReport for Unigene cluster for RAB34 Gene Hs.301853

genes like me logo Genes that share expression patterns with RAB34: view

Protein tissue co-expression partners for RAB34 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RAB34 Gene

Orthologs for RAB34 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RAB34 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RAB34 35
  • 91.01 (n)
  • 96.08 (a)
RAB34 36
  • 66 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RAB34 35
  • 92.79 (n)
  • 97.68 (a)
RAB34 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rab34 35
  • 89.19 (n)
  • 94.98 (a)
Rab34 16
Rab34 36
  • 95 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RAB34 35
  • 99.68 (n)
  • 100 (a)
RAB34 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rab34 35
  • 89.32 (n)
  • 94.59 (a)
oppossum
(Monodelphis domestica)
Mammalia RAB34 36
  • 79 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RAB34 36
  • 72 (a)
OneToOne
chicken
(Gallus gallus)
Aves LOC100858849 35
  • 77.17 (n)
  • 82.35 (a)
RAB34 36
  • 82 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rab34 35
  • 74.94 (n)
  • 81.4 (a)
Str.2247 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.3365 35
zebrafish
(Danio rerio)
Actinopterygii rab34a 35
  • 71.71 (n)
  • 75.97 (a)
rab34a 36
  • 75 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG7980 37
  • 52 (a)
RabX5 36
  • 38 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea C56E6.2 36
  • 22 (a)
ManyToMany
Y71H2AM.12 36
  • 31 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YPT6 36
  • 30 (a)
OneToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.67 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 49 (a)
OneToMany
Species with no ortholog for RAB34:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RAB34 Gene

ENSEMBL:
Gene Tree for RAB34 (if available)
TreeFam:
Gene Tree for RAB34 (if available)

Paralogs for RAB34 Gene

Paralogs for RAB34 Gene

genes like me logo Genes that share paralogs with RAB34: view

Variants for RAB34 Gene

Sequence variations from dbSNP and Humsavar for RAB34 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs12125 - 28,715,047(+) TGAGA(C/G)TGCCC intron-variant, reference, missense
rs15199 -- 28,714,397(+) TCTCC(C/T)TCACT utr-variant-3-prime
rs15200 -- 28,714,351(+) CTCAA(A/G)CACAA utr-variant-3-prime
rs3208128 -- 28,714,472(-) TTCCT(C/G)CCCCC utr-variant-3-prime
rs4429342 -- 28,715,038(+) AGTGA(A/C/G)AGATG intron-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for RAB34 Gene

Variant ID Type Subtype PubMed ID
nsv908028 CNV Loss 21882294

Variation tolerance for RAB34 Gene

Residual Variation Intolerance Score: 36% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.52; 11.32% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RAB34 Gene

HapMap Linkage Disequilibrium report
RAB34
Human Gene Mutation Database (HGMD)
RAB34

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RAB34 Gene

Disorders for RAB34 Gene

MalaCards: The human disease database

(1) MalaCards diseases for RAB34 Gene - From: DISEASES

Disorder Aliases PubMed IDs
low compliance bladder
  • hyperactivity of bladder
- elite association - COSMIC cancer census association via MalaCards
Search RAB34 in MalaCards View complete list of genes associated with diseases

Relevant External Links for RAB34

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAB34
genes like me logo Genes that share disorders with RAB34: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RAB34 Gene

Publications for RAB34 Gene

  1. Rab GTPases regulating phagosome maturation are differentially recruited to mycobacterial phagosomes. (PMID: 21255211) Seto S. … Koide Y. (Traffic 2011) 3 4 67
  2. Rab39, a novel Golgi-associated Rab GTPase from human dendritic cells involved in cellular endocytosis. (PMID: 12684051) Chen T. … Cao X. (Biochem. Biophys. Res. Commun. 2003) 3 23
  3. Small GTPase Rah/Rab34 is associated with membrane ruffles and macropinosomes and promotes macropinosome formation. (PMID: 12446704) Sun P. … Endo T. (J. Biol. Chem. 2003) 2 3
  4. Proteomic analysis and identification of cellular interactors of the giant ubiquitin ligase HERC2. (PMID: 25476789) Galligan J.T. … Howley P.M. (J. Proteome Res. 2015) 3
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3

Products for RAB34 Gene

Sources for RAB34 Gene

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