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RAB33B Gene

protein-coding GIFtS: 53

GC04P140674

RAB33B, member RAS oncogene family
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
DKFZP434G099 ^¹
DKFZp434G099 ^²
MGC138182 ^²

Descriptions
RAB33B, member RAS oncogene family ^²

External Ids
HGNC: 16075¹
Entrez Gene: 83452²
UniProtKB: Q9H082³
Ensembl: ENSG00000172007⁷

Search outside databases for aliases for RAB33B gene

Previous GC identifers: GC04P141280 GC04P140841 GC04P140952 GC04P140732

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: RB33B_HUMAN, Q9H082

Function: Protein transport. Probably involved in vesicular traffic (By similarity)

Gene Wiki entry for RAB33B

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the RAB33B gene

Entrez Gene cytogenetic band: 4q28 Ensembl cytogenetic band: 4q31.1 HGNC cytogenetic band: 4q28

RAB33B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure

GeneLoc location for GC04P140674: (about GC identifiers)

Start:	140,594,411 bp from pter
End:	140,616,520 bp from pter
Size:	22,110 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000004.10 NT_016354.18

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: RB33B_HUMAN, Q9H082 (See protein sequence)

Recommended Name: Ras-related protein Rab-33B

Size: 229 amino acids; 25718 Da

Subcellular location: Golgi apparatus membrane; Lipid-anchor (By similarity)

Secondary accessions: B2R987 Q4W5B0

REFSEQ proteins: NP_112586.1

ENSEMBL proteins:

ENSP00000306496

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (RAB33B)
	Human Recombinant Proteins from Abnova (RAB33B)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

3 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000139	Golgi membrane	IEA	--
GO:0005794	Golgi apparatus	IEA	--
GO:0016020	membrane	IEA	--

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Antibodies for RAB33B:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for RAB33B
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (RAB33B), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (RAB33B)
	Novus Biologicals Antibodies for RAB33B

Assays for RAB33B:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry Q9H082

ProtoNet protein and cluster: Q9H082

1 Blocks protein family: IPB001806 Transforming protein P21 RAS signature

UniProtKB/Swiss-Prot: RB33B_HUMAN, Q9H082

Similarity: Belongs to the small GTPase superfamily. Rab family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (RAB33B)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (RAB33B)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_031296

Applied Biosystems Silencer® siRNAs for RAB33B

Sigma-Aldrich siRNA for RAB33B

Sigma-Aldrich shRNA for RAB33B

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for RAB33B
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_031296
Myc/DDK tagged cDNA clone in CMV expression vector: NM_031296
untagged cDNA clone in CMV expression vector: NM_031296

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_031296

UniProtKB/Swiss-Prot: RB33B_HUMAN, Q9H082

Function: Protein transport. Probably involved in vesicular traffic (By similarity)

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000166	nucleotide binding	IEA	--
GO:0005525	GTP binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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4 Interacting proteins for RAB33B (ENSP00000306496³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
ZNF749	ENSP00000370210³	STRING (score=.86)
RABEP1	ENSP00000262477³	STRING (score=.852)
--	ENSP00000287735³	STRING (score=.943)
--	ENSP00000349519³	STRING (score=.866)

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2 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007264	small GTPase mediated signal transduction	IEA	--
GO:0015031	protein transport	IEA	--

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Enzo Life Sciences drugs & compounds for RAB33B

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for RAB33B

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (RAB33B)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (RAB33B)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_031296

Sigma-Aldrich siRNA for RAB33B

Sigma-Aldrich shRNA for RAB33B

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_031296

REFSEQ mRNAs for RAB33B gene:

NM_031296.1

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_031296

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_031296
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_031296
                                 untagged cDNA clone in CMV expression vector: NM_031296

Additional cDNA sequence:

AF350420.1 AK313685.1 AL136904.1 BC036064.1 BC111977.1

3 DOTS entries:

DT.97838286 DT.75100804 DT.70101003

24/50 AceView cDNA sequences (see all 50 ):

CK823289 NM_031296 CF994555 AL136904 AI889871 AU280090 BM893798 BM931688

BX505064 BM675710 AA577079 BU754295 T30461 BM893637 BQ723710 Z36966

BF194896 AI554525 AV724529 AF350420 BM966968 AI598266 CD511702 BX478341

highest scoring ESTs for RAB33B:

AF350420 AI889871 AL136904 AU280090 AW961338 BC036064 BE182905 BF243121 BF699122 BF701081

Unigene Cluster for RAB33B:

RAB33B, member RAS oncogene family

Hs.591679 [show with all ESTs]

Unigene Representative Sequence: AL136904

GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:

ENST00000305626

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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RAB33B expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for RAB33B

¹ / ² / ³

3 probe-sets matching RAB33B gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
85186_r_at²^{, 3}	U95-E	1	1.00	1.00	1.00	1.00	AI889871	0.80	1.00	0.91	1
221014_s_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_031296	0.60	1.00	0.82	1
221014_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: AAGTTCAATA

SOURCE GeneReport for Unigene cluster: Hs.591679

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
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Orthologs for RAB33B gene from 5/11 species (see all 11 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
chimpanzee (Pan troglodytes)	RAB33B¹	--	RAB33B, member RAS oncogene family	99.85(n) 99.56(a)	461496 XM_517445.2 XP_517445.2
cow (Bos taurus)	RAB33B¹	--	RAB33B, member RAS oncogene family	92.72(n) 96.94(a)	519982 XM_598212.3 XP_598212.2
rat (Rattus norvegicus)	Rab33b¹	--	RAB33B, member of RAS oncogene family	87.48(n) 95.63(a)	365793 XM_345208.3 XP_345209.1
mouse (Mus musculus)	Rab33b^{1, 5}	3⁵	RAB33B, member of RAS oncogene family^{1, 5}	87.48(n)¹ 94.76(a)¹	19338¹ NM_016858.1¹ NP_058554.1¹ AB004664⁵ AB004665⁵ (see all 17)
chicken (Gallus gallus)	RAB33B¹	--	RAB33B, member RAS oncogene family	82.23(n) 92.51(a)	422441 NM_001008466.1 NP_001008466.1

About this table Species with no ortholog for RAB33B

ENSEMBL Gene Tree for RAB33B

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for RAB33B gene

RAB42² RAB33A²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/90 NCBI SNPs in RAB33B are shown (see all 90 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 28)

AB	SNP ID	Valid	Chr 4 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs13137997^1,2	C,F,H	140614325(+)	`TATTGG/ATATGT`	1	--	ut3¹ ese³		4		EU EA WA	416
	rs4074940^1,2	C,F,H	140615033(+)	`GTATCC/TCATAT`	1	--	ut3¹ ese³		8		EU EA WA NA	632
	rs3088313^1,2	A,C,F	140616381(-)	`ATAGCG/TAACTA`	1	--	ut3¹ ese³		5		MN NA EA	546
	rs6536199^1,2	A,C,F,H	140608663(+)	`ctctaT/Cgtcca`	1	--	int¹		7		EU EA WA NA	550
	rs12645911^1,2	A,C,F,H	140598436(+)	`ACCTAG/CGTTGT`	1	--	int¹		4		EU EA WA	412
	rs6818778^1,2	A,C,F,H	140603748(+)	`ctggcA/Gagagt`	1	--	int¹		7		EU EA WA NA	554
	rs12651431^1,2	C,F,H	140597963(+)	`TTCCTC/TGTGTG`	1	--	int¹ trp³		6		EU EA WA NA	600
	rs10014315^1,2	C,F,H	140611937(+)	`tgcctC/Ttcatt`	1	--	int¹		4		EU EA WA	416
--	rs7662484^1,2	A,C,F	140606825(+)	`TTCTGC/TGTAAT`	1	--	int¹		3		NA	138
--	rs6536198^1,2	A,C	140607431(+)	`tgcccA/Gcctcg`	1	--	int¹		0	--	--	--	--

About this table

HapMap Linkage Disequilibrium images for RAB33B (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 605950

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/11 PubMed articles for RAB33B gene (see all 11 ):

Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)^{3, 4} Hillier L.W....Wilson R.K. (2005)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)^{3, 4} Wiemann S.... Poustka A. (2001)
Golgi-resident small GTPase Rab33B interacts with Atg16L and modulates autophagosome formation. (PubMed id 18448665)³ Itoh T....Fukuda M. (2008)
High-throughput mapping of a dynamic signaling network in mammalian cells. (PubMed id 15761153)³ Barrios-Rodiles M....Wrana J.L. (2005)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)⁴ Ota T....Sugano S. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Identification of rabaptin-5, rabex-5, and GM130 as putative effectors of rab33b, a regulator of retrograde traffic between the Golgi apparatus and ER. (PubMed id 11718716)³ Valsdottir R....Nilsson T. (2001)
Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )⁴ Aoki H.... Hino O. (2000)
Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. (PubMed id 11256614)³ Simpson J.C.... Wiemann S. (2000)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 83452	HGNC: 16075	AceView: RAB33B	Ensembl:ENSG00000172007	euGenes: HUgn83452
ECgene: RAB33B	H-InvDB: RAB33B

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
ATLAS Chromosomes in Cancer entry for RAB33B	Genetics and Cytogenetics in Oncology and Haematology

Licensable Technologies for RAB33B
(Available from WIS Yeda, Salk, Tufts)

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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for RAB33B:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for RAB33B-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for RAB33B		Antibodies for RAB33B
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for RAB33B		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

	Recombinant Proteins (RAB33B)
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	Custom Service for Mouse Mab
	Custom Service for Rabbit Pab from Full-length Protein

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Search OriGene for RAB33B

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	Drugs for RAB33B
	Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies

Antibodies for RAB33B

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RAB33B Gene

protein-coding GIFtS: 53

Aliases &
Descriptions
for RAB33B

Summaries
for RAB33B

Genomic Location
for RAB33B

Proteins
for RAB33B

Protein Domains/
Families
for RAB33B

Gene Function
for RAB33B

Pathways & Interactions
for RAB33B

Drugs & Compounds
for RAB33B

Transcripts
for RAB33B

Expression
for RAB33B

Orthologs
for RAB33B

Paralogs
for RAB33B

SNPs/Variants
for RAB33B

Disorders & Mutations
for RAB33B

Medical News
for RAB33B

Publications
for RAB33B

Search for RAB33B

Genome Databases showing RAB33B

Other Databases showing RAB33B

Specialized Databases showing RAB33B

Licensable Technologies
for RAB33B

Services
for RAB33B

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

RAB33B Gene

protein-coding GIFtS: 53

Aliases & Descriptionsfor RAB33B

Summariesfor RAB33B

Genomic Locationfor RAB33B

Proteinsfor RAB33B

Protein Domains/Familiesfor RAB33B

Gene Functionfor RAB33B

Pathways & Interactionsfor RAB33B

Drugs & Compoundsfor RAB33B

Transcriptsfor RAB33B

Expression for RAB33B

Orthologsfor RAB33B

Paralogsfor RAB33B

SNPs/Variantsfor RAB33B

Disorders & Mutationsfor RAB33B

Medical Newsfor RAB33B

Publicationsfor RAB33B

Search for RAB33B

Genome Databases showing RAB33B

Other Databases showing RAB33B

Specialized Databases showing RAB33B

Licensable Technologiesfor RAB33B

Servicesfor RAB33B

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for RAB33B

Summaries
for RAB33B

Genomic Location
for RAB33B

Proteins
for RAB33B

Protein Domains/
Families
for RAB33B

Gene Function
for RAB33B

Pathways & Interactions
for RAB33B

Drugs & Compounds
for RAB33B

Transcripts
for RAB33B

Expression
for RAB33B

Orthologs
for RAB33B

Paralogs
for RAB33B

SNPs/Variants
for RAB33B

Disorders & Mutations
for RAB33B

Medical News
for RAB33B

Publications
for RAB33B

Licensable Technologies
for RAB33B

Services
for RAB33B