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RAB33A Gene

protein-coding   GIFtS: 56
GCID: GC0XP129305

RAB33A, Member RAS Oncogene Family

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
RAB33A, Member RAS Oncogene Family1 2
Small GTP-Binding Protein S102 3
RabS102
Ras-Related Protein Rab-33A2
RABS103

External Ids:    HGNC: 97731   Entrez Gene: 93632   Ensembl: ENSG000001345947   OMIM: 3003335   UniProtKB: Q140883   

Export aliases for RAB33A gene to outside databases

Previous GC identifers: GC0XP123951 GC0XP126151 GC0XP127250 GC0XP128011 GC0XP129031 GC0XP129133 GC0XP118701


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for RAB33A Gene:
The protein encoded by this gene belongs to the small GTPase superfamily, Rab family. It is GTP-binding protein
and may be involved in vesicle transport. (provided by RefSeq, Jul 2008)

GeneCards Summary for RAB33A Gene:
RAB33A (RAB33A, member RAS oncogene family) is a protein-coding gene. GO annotations related to this gene include GTP binding and GTPase activity. An important paralog of this gene is RAB35.

Gene Wiki entry for RAB33A Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000023.10  NC_018934.2  NT_011786.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the RAB33A gene promoter:
         AhR   Pax-6   ATF-2   c-Jun   Evi-1   Arnt   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRAB33A promoter sequence
   Search Chromatin IP Primers for RAB33A

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RAB33A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq26.1   Ensembl cytogenetic band:  Xq26.1   HGNC cytogenetic band: Xq26

RAB33A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RAB33A gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP129305:  view genomic region     (about GC identifiers)

Start:
129,305,623 bp from pter      End:
129,318,844 bp from pter
Size:
13,222 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: RB33A_HUMAN, Q14088 (See protein sequence)
Recommended Name: Ras-related protein Rab-33A  
Size: 237 amino acids; 26593 Da
Secondary accessions: Q5JUZ6 Q92465

Explore the universe of human proteins at neXtProt for RAB33A: NX_Q14088

Explore proteomics data for RAB33A at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See RAB33A Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_004785.1  
    ENSEMBL proteins: 
     ENSP00000257017  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    RAB: RAB, member RAS oncogene

    4 InterPro protein domains:
     IPR005225 Small_GTP-bd_dom
     IPR001806 Small_GTPase
     IPR003579 Small_GTPase_Rab_type
     IPR027417 P-loop_NTPase

    Graphical View of Domain Structure for InterPro Entry Q14088

    ProtoNet protein and cluster: Q14088

    1 Blocks protein domain: IPB001806 Transforming protein P21 RAS signature

    UniProtKB/Swiss-Prot: RB33A_HUMAN, Q14088
    Similarity: Belongs to the small GTPase superfamily. Rab family


    Find genes that share domains with RAB33A           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:
         Genatlas biochemistry entry for RAB33A:
    RAB33A,Ras oncogene superfamily member,expressed in brain

         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003924GTPase activity TAS7688322
    GO:0005515protein binding IPI16189514
    GO:0005525GTP binding IEA--
         
    Find genes that share ontologies with RAB33A           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for RAB33A:
     Decreased number of cells in m 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for RAB33A

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    SwitchGear 3'UTR luciferase reporter plasmidRAB33A 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    RB33A_HUMAN, Q14088: Cell membrane; Lipid-anchor; Cytoplasmic side (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane5
    cytosol3
    nucleus2
    extracellular1
    golgi apparatus1
    vacuole1

    Gene Ontology (GO): 5 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus ----
    GO:0005737cytoplasm ----
    GO:0005886plasma membrane IEA--
    GO:0016020membrane ----

    Find genes that share ontologies with RAB33A           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for RAB33A About    
    See pathways by source

    SuperPathContained pathways About
    1Sertoli-Sertoli Cell Junction Dynamics
    Epithelial Tight Junctions0.36

    1 Downloadable PowerPoint Slide of GeneGlobe Pathway Central Maps for RAB33A
        Epithelial Tight Junctions



        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RAB33A
    Interactions:

        Search GeneGlobe Interaction Network for RAB33A

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for RAB33A (Q140881, 2, 3 ENSP000002570174) via UniProtKB, MINT, STRING, and/or I2D (see all 85)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RTN4Q9NQC32, 3, ENSP000003378384MINT-68220 I2D: score=5 STRING: ENSP00000337838
    RABAC1Q9UI141, 2, 3, ENSP000002220084EBI-744685,EBI-712367 MINT-66546 I2D: score=5 STRING: ENSP00000222008
    RTN3O951973, ENSP000003441064I2D: score=4 STRING: ENSP00000344106
    ATG16L1Q676U53I2D: score=1 
    RASA1ENSP000002743764STRING: ENSP00000274376
    About this table

    Gene Ontology (GO): Selected biological process terms (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006184GTP catabolic process TAS7688322
    GO:0006886intracellular protein transport ----
    GO:0006913nucleocytoplasmic transport ----
    GO:0007165signal transduction ----
    GO:0007264small GTPase mediated signal transduction IEA--

    Find genes that share ontologies with RAB33A           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RAB33A (RB33A)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for RAB33A gene: 
    NM_004794.2  

    Unigene Cluster for RAB33A:

    RAB33A, member RAS oncogene family
    Hs.654356  [show with all ESTs]
    Unigene Representative Sequence: AK094927
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000257017(uc004evl.3 uc010nre.3)
    miRNA
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    hsa-miR-3149 hsa-miR-3934 hsa-miR-4261 hsa-miR-300 hsa-miR-3688-3p hsa-miR-381 hsa-miR-590-3p hsa-miR-1284
    SwitchGear 3'UTR luciferase reporter plasmidRAB33A 3' UTR sequence
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      QuantiTect SYBR Green Assays in human, mouse, rat RAB33A
      QuantiFast Probe-based Assays in human, mouse, rat RAB33A

    Additional mRNA sequence: 

    AF498959.1 AK094927.1 BC001157.1 BC001704.1 BC009996.2 BT007038.1 D14889.1 

    8 DOTS entries:

    DT.411309  DT.97840294  DT.100752284  DT.121278816  DT.95162596  DT.100752283  DT.121278779  DT.100022785 

    Selected AceView cDNA sequences (see all 58):

    BQ054652 NM_004794 BC009996 BQ188062 AK094927 BQ013978 AI263411 BC001157 
    CK300872 BC001704 AF498959 AI360342 AA809304 AA234960 BI197327 T29554 
    CK300478 BT007038 BI602712 AW949801 BQ011434 BF529259 CB121712 BI197877 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    RAB33A expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TGCTTGGCTT
    RAB33A Expression
    About this image


    RAB33A expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 3) fully expand
     
     Eye (Sensory Organs)
             GABAergic Amacrine Cells Inner Nuclear Layer
     
     Ovary (Reproductive System)
             Mature follicles
     
     Neurons
             GABAergic Amacrine Cells Inner Nuclear Layer
    RAB33A Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RAB33A Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.654356

    UniProtKB/Swiss-Prot: RB33A_HUMAN, Q14088
    Tissue specificity: Expressed only in lymphoid cell lines

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals and fungi.

    Orthologs for RAB33A gene from Selected species (see all 14)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rab33a1 , 5 RAB33A, member of RAS oncogene family1, 5 92.26(n)1
    98.31(a)1
      X (25.68 cM)5
    193371  NM_011228.21  NP_035358.11 
     485192855 
    chicken
    (Gallus gallus)
    Aves RAB33A1 RAB33A, member RAS oncogene family 82.94(n)
    88.26(a)
      769358  XM_004940568.1  XP_004940625.1 
    lizard
    (Anolis carolinensis)
    Reptilia RAB33A6
    RAB33A, member RAS oncogene family
    86(a)
    1 ↔ 1
    GL343451.1(331337-337886)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia rab33a1 RAB33A, member RAS oncogene family 65.89(n)
    71.5(a)
      779982  NM_001079059.1  NP_001072527.1 
    zebrafish
    (Danio rerio)
    Actinopterygii rab33a1 RAB33A, member RAS oncogene family 72.12(n)
    78.76(a)
      751718  NM_001045428.1  NP_001038893.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Rab9Fb6
    Rab GTPase 9Fb
    32(a)
    many ↔ many
    X(10845642-10846519)
    worm
    (Caenorhabditis elegans)
    Secernentea rab-336
    Protein RAB-33 (rab-33) mRNA, complete cds
    36(a)
    1 → many
    III(10500284-10503851) WBGene00004283
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes SEC46
    Rab family GTPase essential for vesicle-mediated e...
    36(a)
    1 → many
    VI(130334-130981) YFL005W


    ENSEMBL Gene Tree for RAB33A (if available)
    TreeFam Gene Tree for RAB33A (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for RAB33A gene
    RAB352  RAB33B2  RAB182  
    Selected SIMAP similar genes for RAB33A using alignment to 1 protein entry:     RB33A_HUMAN(see all similar genes):
    RAB33B    DKFZp686J07132    RAB19    RAB43    RAB30    RAB1B
    RAB15    RAB10    RAB8A    RAB1C    RAB8B    RAB11A
    RAB37    RAB39B    RAB12    RAB13    RAB26    RAB2A

    Find genes that share paralogs with RAB33A           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RAB33A (see all 203)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr X posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1882204501,2
    --129260672(+) ACCTGA/GGCCAG 1 -- us2k10--------
    rs1806799761,2
    C--129260761(+) TGTGGC/TCCTCT 1 -- us2k10--------
    rs1458499521,2
    C--129260763(+) TGGCCC/GTCTCC 1 -- us2k10--------
    rs1387086291,2
    C--129260873(+) GATAAA/GGGGAT 1 -- us2k10--------
    rs59772191,2
    C,F,H--129261085(+) TCCCTT/GTATCC 1 -- us2k18Minor allele frequency- G:0.01NS EA NA 800
    rs1412700441,2
    --129261230(+) TTGCTC/GCAGGG 1 -- us2k10--------
    rs1905484971,2
    --129261767(+) ACGCAC/GAGAGC 1 -- ut510--------
    rs115428741,2
    C,F--129261874(+) CCATCC/GTGGGC 2 L V mis11Minor allele frequency- G:0.01NA 3414
    rs2008778531,2
    C--129261895(+) TGCAGC/TCCGCC 2 P S mis10--------
    rs350565921,2
    C,F--129261936(-) AGCGAC/TGAGTC 2 S syn12Minor allele frequency- T:0.01NA 4582

    HapMap Linkage Disequilibrium report for RAB33A (129305623 - 129318844 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for RAB33A:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv528290CNV Gain19592680

    Locus Specific Mutation Databases (LSDB): RAB33A

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing RAB33A
    DNA2.0 Custom Variant and Variant Library Synthesis for RAB33A

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 300333    OMIM disorders: --

    1 disease from the University of Copenhagen DISEASES database for RAB33A:
    Alport syndrome

    Find genes that share disorders with RAB33A           About GenesLikeMe


    Export disorders for RAB33A gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RAB33A gene, integrated from 10 sources (see all 13):
    (articles sorted by number of sources associating them with RAB33A)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Molecular cloning of a cDNA encoding a novel small GTP-binding protein. (PubMed id 7688322)1, 2, 3 Koda T. and Kakinuma M. (FEBS Lett. 1993)
    2. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (Nature 2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. A novel Rab GTPase, Rab33B, is ubiquitously expressed and localized to the medial Golgi cisternae. (PubMed id 9512502)1, 3 Zheng J.Y....Kakinuma M. (J. Cell. Sci. 1998)
    5. Protein interactions of the transcription factor Hoxa1. (PubMed id 23088713)1 Lambert B....Rezsohazy R. (BMC Dev. Biol. 2012)
    6. The GTPase Rab3b/3c-positive recycling vesicles are involved in cross-presentation in dendritic cells. (PubMed id 19717423)1 Zou L....Wu Y. (Proc. Natl. Acad. Sci. U.S.A. 2009)
    7. An empirical framework for binary interactome mapping. (PubMed id 19060904)1 Venkatesan K....Vidal M. (Nat. Methods 2009)
    8. Golgi-resident small GTPase Rab33B interacts with Atg16L and modulates autophagosome formation. (PubMed id 18448665)1 Itoh T.... Fukuda M. (Mol. Biol. Cell 2008)
    9. Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)1 Rual J.F....Vidal M. (Nature 2005)
    10. Ras-associated small GTPase 33A, a novel T cell factor, is down-regulated in patients with tuberculosis. (PubMed id 16136464)1 Jacobsen M....Kaufmann S.H. (J. Infect. Dis. 2005)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 9363 HGNC: 9773 AceView: RAB33A Ensembl:ENSG00000134594 euGenes: HUgn9363
    ECgene: RAB33A H-InvDB: RAB33A

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for RAB33A Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for RAB33A Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
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    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RAB33A gene:
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