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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RAB33A Gene

protein-coding   GIFtS: 56
GCID: GC0XP129305

RAB33A, Member RAS Oncogene Family

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
RAB33A, Member RAS Oncogene Family1 2
Small GTP-Binding Protein S102 3
RabS102
Ras-Related Protein Rab-33A2
RABS103

External Ids:    HGNC: 97731   Entrez Gene: 93632   Ensembl: ENSG000001345947   OMIM: 3003335   UniProtKB: Q140883   

Export aliases for RAB33A gene to outside databases

Previous GC identifers: GC0XP123951 GC0XP126151 GC0XP127250 GC0XP128011 GC0XP129031 GC0XP129133 GC0XP118701


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RAB33A Gene:
The protein encoded by this gene belongs to the small GTPase superfamily, Rab family. It is GTP-binding protein
and may be involved in vesicle transport. (provided by RefSeq, Jul 2008)

GeneCards Summary for RAB33A Gene: 
RAB33A (RAB33A, member RAS oncogene family) is a protein-coding gene. Diseases associated with RAB33A include alport syndrome, and tuberculosis, and among its related super-pathways are Sertoli-Sertoli Cell Junction Dynamics. GO annotations related to this gene include GTP binding and GTPase activity. An important paralog of this gene is RAB33B.

Gene Wiki entry for RAB33A Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000023.10  NC_018934.2  NT_011786.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RAB33A gene promoter:
         AhR   Pax-6   ATF-2   c-Jun   Evi-1   Arnt   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRAB33A promoter sequence
   Search SABiosciences Chromatin IP Primers for RAB33A

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RAB33A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq26.1   Ensembl cytogenetic band:  Xq26.1   HGNC cytogenetic band: Xq26

RAB33A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RAB33A gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP129305:  view genomic region     (about GC identifiers)

Start:
129,305,623 bp from pter      End:
129,318,844 bp from pter
Size:
13,222 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: RB33A_HUMAN, Q14088 (See protein sequence)
Recommended Name: Ras-related protein Rab-33A  
Size: 237 amino acids; 26593 Da
Subcellular location: Cell membrane; Lipid-anchor; Cytoplasmic side (Potential)
Secondary accessions: Q5JUZ6 Q92465

Explore the universe of human proteins at neXtProt for RAB33A: NX_Q14088

Explore proteomics data for RAB33A at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q14088

  • RAB33A Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    RAB33A Protein Expression
    REFSEQ proteins: NP_004785.1  
    ENSEMBL proteins: 
     ENSP00000257017  

    Human Recombinant Protein Products for RAB33A: 
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    Cloud-Clone Corp. Proteins for RAB33A 

    Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus ----
    GO:0005737cytoplasm ----
    GO:0005886plasma membrane IEA--
    GO:0016020membrane ----

    RAB33A for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    RAB: RAB, member RAS oncogene

    4 InterPro protein domains:
     IPR005225 Small_GTP-bd_dom
     IPR001806 Small_GTPase
     IPR003579 Small_GTPase_Rab_type
     IPR027417 P-loop_NTPase

    Graphical View of Domain Structure for InterPro Entry Q14088

    ProtoNet protein and cluster: Q14088

    1 Blocks protein domain: IPB001806 Transforming protein P21 RAS signature

    UniProtKB/Swiss-Prot: RB33A_HUMAN, Q14088
    Similarity: Belongs to the small GTPase superfamily. Rab family


    RAB33A for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:
         Genatlas biochemistry entry for RAB33A:
    RAB33A,Ras oncogene superfamily member,expressed in brain

         Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003924GTPase activity TAS7688322
    GO:0005515protein binding IPI16189514
    GO:0005525GTP binding IEA--
         
    RAB33A for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for RAB33A:
     Decreased number of cells in m 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for RAB33A 
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    SwitchGear 3'UTR luciferase reporter plasmidRAB33A 3' UTR sequence
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section

    SuperPaths for RAB33A About                                                                                                See pathways by source

    SuperPathContained pathways About
    1Sertoli-Sertoli Cell Junction Dynamics
    Epithelial Tight Junctions0.36

    1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for RAB33A
        Epithelial Tight Junctions



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RAB33A

    STRING Interaction Network Preview (showing 5 interactants - click image to see 10)

    5/14 Interacting proteins for RAB33A (Q140881, 2, 3 ENSP000002570174) via UniProtKB, MINT, STRING, and/or I2D (see all 14)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RTN4Q9NQC32, 3, ENSP000003378384MINT-68220 I2D: score=5 STRING: ENSP00000337838
    RABAC1Q9UI141, 2, 3, ENSP000002220084EBI-744685,EBI-712367 MINT-66546 I2D: score=5 STRING: ENSP00000222008
    RTN3O951973, ENSP000003441064I2D: score=4 STRING: ENSP00000344106
    ATG16L1Q676U53I2D: score=1 
    RASA1ENSP000002743764STRING: ENSP00000274376
    About this table

    Gene Ontology (GO): 5/6 biological process terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006184GTP catabolic process TAS7688322
    GO:0006886intracellular protein transport ----
    GO:0006913nucleocytoplasmic transport ----
    GO:0007165signal transduction ----
    GO:0007264small GTPase mediated signal transduction IEA--

    RAB33A for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RAB33A (RB33A)

    Search CenterWatch for drugs/clinical trials and news about RAB33A / RB33A

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RAB33A gene: 
    NM_004794.2  

    Unigene Cluster for RAB33A:

    RAB33A, member RAS oncogene family
    Hs.654356  [show with all ESTs]
    Unigene Representative Sequence: AK094927
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000257017(uc004evl.3 uc010nre.3)
    miRNA
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    hsa-miR-3149 hsa-miR-3934 hsa-miR-4261 hsa-miR-300 hsa-miR-3688-3p hsa-miR-381 hsa-miR-590-3p hsa-miR-1284
    SwitchGear 3'UTR luciferase reporter plasmidRAB33A 3' UTR sequence
    Inhib. RNA
    Products:
         
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RAB33A
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RAB33A

    Additional mRNA sequence: 

    AF498959.1 AK094927.1 BC001157.1 BC001704.1 BC009996.2 BT007038.1 D14889.1 

    8 DOTS entries:

    DT.411309  DT.97840294  DT.100752284  DT.121278816  DT.95162596  DT.100752283  DT.121278779  DT.100022785 

    24/58 AceView cDNA sequences (see all 58):

    AI360342 BQ054652 BC001704 CK300872 AA809304 AK094927 BQ013978 AI263411 
    BC001157 BQ188062 AA234960 BC009996 AF498959 NM_004794 AV722139 BV191234 
    BQ058526 BT007038 BF529259 BQ189478 CB121712 AW949801 N39090 BI197327 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RAB33A expression in normal human tissues (normalized intensities)      RAB33A embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TGCTTGGCTT
    RAB33A Expression
    About this image


    RAB33A expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/3 selected tissues (see all 3) fully expand
     
     Eye (Sensory Organs)
             GABAergic Amacrine Cells Inner Nuclear Layer
     
     Melanocytes (Integumentary System)
             Human EpiDermal Melanocytes (HEM)   
     
     Epidermis (Integumentary System)
             Human EpiDermal Melanocytes (HEM)   

    See RAB33A Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RAB33A

    SOURCE GeneReport for Unigene cluster: Hs.654356

    UniProtKB/Swiss-Prot: RB33A_HUMAN, Q14088
    Tissue specificity: Expressed only in lymphoid cell lines

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals and fungi.

    Orthologs for RAB33A gene from 6/12 species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rab33a1 , 5 RAB33A, member of RAS oncogene family1, 5 92.26(n)1
    98.31(a)1
      X (25.68 cM)5
    193371  NM_011228.11  NP_035358.11 
     485192855 
    chicken
    (Gallus gallus)
    Aves RAB33A1 RAB33A, member RAS oncogene family 82.69(n)
    88.46(a)
      769358  XM_001231924.2  XP_001231925.1 
    lizard
    (Anolis carolinensis)
    Reptilia RAB33A6
    Uncharacterized protein
    86(a)
    1 ↔ 1
    GL343451.1(331337-337886)
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:1537101 zgc:153710 73.8(n)
    82.33(a)
      751718  NM_001045428.1  NP_001038893.1 
    worm
    (Caenorhabditis elegans)
    Secernentea rab-336
    Ras-related protein Rab-33
    36(a)
    1 → many
    III(10500284-10503851)
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes YPT116
    Rab family GTPase that interacts with the C-termin...
    15(a)
    1 → many
    XIV(60297-61550)


    ENSEMBL Gene Tree for RAB33A (if available)
    TreeFam Gene Tree for RAB33A (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for RAB33A gene
    RAB33B2  
    18/69 SIMAP similar genes for RAB33A using alignment to 1 protein entry:     RB33A_HUMAN(see all similar genes):
    RAB33B    DKFZp686J07132    RAB19    RAB43    RAB30    RAB1B
    RAB15    RAB10    RAB8A    RAB1C    RAB8B    RAB11A
    RAB37    RAB39B    RAB12    RAB13    RAB26    RAB2A

    RAB33A for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/203 SNPs in RAB33A are shown (see all 203)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr X posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    VAR_0068494
    ----see VAR_0068492 M T mis40--------
    rs1882204501,2
    --129260672(+) ACCTGA/GGCCAG 1 -- us2k10--------
    rs1806799761,2
    C--129260761(+) TGTGGC/TCCTCT 1 -- us2k10--------
    rs1458499521,2
    C--129260763(+) TGGCCC/GTCTCC 1 -- us2k10--------
    rs1387086291,2
    C--129260873(+) GATAAA/GGGGAT 1 -- us2k10--------
    rs59772191,2
    C,F,H--129261085(+) TCCCTT/GTATCC 1 -- us2k18Minor allele frequency- G:0.01NS EA NA 800
    rs1412700441,2
    --129261230(+) TTGCTC/GCAGGG 1 -- us2k10--------
    rs1905484971,2
    --129261767(+) ACGCAC/GAGAGC 1 -- ut510--------
    rs115428741,2
    C,F--129261874(+) CCATCC/GTGGGC 2 L V mis11Minor allele frequency- G:0.01NA 3414
    rs2008778531,2
    C--129261895(+) TGCAGC/TCCGCC 2 P S mis10--------

    HapMap Linkage Disequilibrium report for RAB33A (129305623 - 129318844 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for RAB33A:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv528290CNV Gain19592680


    Locus Specific Mutation Databases (LSDB): RAB33A
    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 300333    OMIM disorders: --

    2 diseases for RAB33A:    About MalaCards
    alport syndrome    tuberculosis

    1 disease from the University of Copenhagen DISEASES database for RAB33A:
    Alport syndrome

    RAB33A for disorders           About GeneDecksing


    Export disorders for RAB33A gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RAB33A gene, integrated from 9 sources (see all 12):
    (articles sorted by number of sources associating them with RAB33A)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Molecular cloning of a cDNA encoding a novel small GTP-binding protein. (PubMed id 7688322)1, 2, 3 Koda T. and Kakinuma M. (1993)
    2. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. A novel Rab GTPase, Rab33B, is ubiquitously expressed and localized to the medial Golgi cisternae. (PubMed id 9512502)1, 3 Zheng J.Y....Kakinuma M. (1998)
    5. Protein interactions of the transcription factor Hoxa1 . (PubMed id 23088713)1 Lambert B....Rezsohazy R. (2012)
    6. An empirical framework for binary interactome mapping . (PubMed id 19060904)1 Venkatesan K....Vidal M. (2009)
    7. Golgi-resident small GTPase Rab33B interacts with Atg16L and modulates autophagosome formation. (PubMed id 18448665)1 Itoh T....Fukuda M. (2008)
    8. Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)1 Rual J.F....Vidal M. (2005)
    9. Ras-associated small GTPase 33A, a novel T cell factor, is down-regulated in patients with tuberculosis. (PubMed id 16136464)1 Jacobsen M....Kaufmann S.H. (2005)
    10. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 9363 HGNC: 9773 AceView: RAB33A Ensembl:ENSG00000134594 euGenes: HUgn9363
    ECgene: RAB33A H-InvDB: RAB33A

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RAB33A Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for RAB33A Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RAB33A gene:
    Search GeneIP for patents involving RAB33A

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