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RAB33A Gene

protein-coding GIFtS: 59

GC0XP129133

RAB33A, member RAS oncogene family
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
MGC1488 ^²
RABS10 ^³
RabS10 ^¹, ²

Descriptions
RAB33A, member RAS oncogene family ^²
Ras-related protein Rab-33A ^²
Small GTP-binding protein S10 ^², ³

External Ids
HGNC: 9773¹
Entrez Gene: 9363²
UniProtKB: Q14088³
Ensembl: ENSG00000134594⁷

Search outside databases for aliases for RAB33A gene

Previous GC identifers: GC0XP123951 GC0XP126151 GC0XP127250 GC0XP128011 GC0XP129031

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for RAB33A:

The protein encoded by this gene belongs to the small GTPase superfamily, Rab family. It is

GTP-binding protein and may be involved in vesicle transport. [provided by RefSeq]

Gene Wiki entry for RAB33A

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the RAB33A gene

Entrez Gene cytogenetic band: Xq25 Ensembl cytogenetic band: Xq25 HGNC cytogenetic band: Xq26

RAB33A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome X GeneLoc Exon Structure

GeneLoc location for GC0XP129133: (about GC identifiers)

Start:	129,133,454 bp from pter
End:	129,146,525 bp from pter
Size:	13,072 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000023.9 NT_011786.15

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: RB33A_HUMAN, Q14088 (See protein sequence)

Recommended Name: Ras-related protein Rab-33A

Size: 237 amino acids; 26593 Da

Subcellular location: Cell membrane; Lipid-anchor; Cytoplasmic side (Potential)

Secondary accessions: Q5JUZ6 Q92465

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_004785.1

ENSEMBL proteins:

ENSP00000257017

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (RAB33A)
	Human Recombinant Proteins from Abnova (RAB33A)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

1 Gene Ontology (GO) cellular component term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005886	plasma membrane	IEA	--

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Antibodies for RAB33A:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for RAB33A
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (RAB33A), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (RAB33A)
	Novus Biologicals Antibodies for RAB33A

Assays for RAB33A:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry Q14088

ProtoNet protein and cluster: Q14088

1 Blocks protein family: IPB001806 Transforming protein P21 RAS signature

UniProtKB/Swiss-Prot: RB33A_HUMAN, Q14088

Similarity: Belongs to the small GTPase superfamily. Rab family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (RAB33A)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (RAB33A)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004794

Applied Biosystems Silencer® siRNAs for RAB33A

Sigma-Aldrich siRNA for RAB33A

Sigma-Aldrich shRNA for RAB33A

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for RAB33A
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_004794
Myc/DDK tagged cDNA clone in CMV expression vector: NM_004794
untagged cDNA clone in CMV expression vector: NM_004794

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_004794

Genatlas biochemistry entry for RAB33A:

RAB33A,Ras oncogene superfamily member,expressed in brain

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000166	nucleotide binding	IEA	--
GO:0003924	GTPase activity	TAS	7688322
GO:0005525	GTP binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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4 Interacting proteins for RAB33A (Q14088² ENSP00000257017³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
RABAC1	Q9UI14²	MINT-66546
--	ENSP00000287735³	STRING (score=.941)
--	Q7RTN4²	MINT-67701
--	Q96B16²	MINT-68220

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2 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007264	small GTPase mediated signal transduction	IEA	--
GO:0015031	protein transport	IEA	--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Enzo Life Sciences drugs & compounds for RAB33A

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for RAB33A

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (RAB33A)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (RAB33A)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004794

Sigma-Aldrich siRNA for RAB33A

Sigma-Aldrich shRNA for RAB33A

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_004794

REFSEQ mRNAs for RAB33A gene:

NM_004794.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_004794

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004794
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_004794
                                 untagged cDNA clone in CMV expression vector: NM_004794

Additional cDNA sequence:

AF498959.1 AK094927.1 BC001157.1 BC001704.1 BC009996.2 BT007038.1 D14889.1

8 DOTS entries:

DT.411309 DT.97840294 DT.100752284 DT.95162596 DT.121278816 DT.100752283 DT.121278779 DT.100022785

24/58 AceView cDNA sequences (see all 58 ):

AI263411 AA809304 AK094927 AI360342 BQ013978 BC001704 BC001157 BQ054652

BQ188062 AA234960 AF498959 NM_004794 BC009996 CK300872 CK300478 AI766881

CB121712 BI197327 BV191234 BG820228 BG218285 AV722139 BQ058526 BQ189758

highest scoring ESTs for RAB33A:

D14889 AA234960 AA773789 AA809304 AF498959 AI263411 AI263415 AI274058 AI287602 AI360342

Unigene Cluster for RAB33A:

RAB33A, member RAS oncogene family

Hs.654356 [show with all ESTs]

Unigene Representative Sequence: AK094927

GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:

ENST00000257017

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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RAB33A expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for RAB33A

¹ / ² / ³

5 probe-sets matching RAB33A gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
1202_g_at²^{, 3}	U95-A	1	1.00	1.00	0.92	1.25	D14889	1.00	1.00	1.00	1
1201_at²^{, 3}	U95-A	1	1.00	1.00	0.96	0.98	D14889	1.00	1.00	1.00	1
73555_at²^{, 3}	U95-D	1	0.88	1.00	0.56	0.79	AI871462	0.60	1.00	0.82	1
206039_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_004794	0.60	1.00	0.82	1
206039_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks RAB33A for binary patterns associated with the probe-sets selected above

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: TGCTTGGCTT

SOURCE GeneReport for Unigene cluster: Hs.654356
Expression variation in blood from EXPOLDB for RAB33A
UniProtKB/Swiss-Prot: RB33A_HUMAN, Q14088
Tissue specificity: Expressed only in lymphoid cell lines

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
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Orthologs for RAB33A gene from 5/6 species (see all 6 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	RAB33A¹	--	RAB33A, member RAS oncogene family	96.48(n) 100(a)	612988 XM_849247.1 XP_854340.1
cow (Bos taurus)	LOC784703¹	--	similar to PR33A	95.5(n) 99.16(a)	784703 XM_001251479.1 XP_001251480.1
rat (Rattus norvegicus)	Rab33a¹	--	RAB33A, member of RAS oncogene family	93.11(n) 99.16(a)	317580 XM_229145.3 XP_229145.2
mouse (Mus musculus)	Rab33a^{1, 5}	X⁵	RAB33A, member of RAS oncogene family^{1, 5}	92.26(n)¹ 98.31(a)¹	19337¹ NM_011228.1¹ NP_035358.1¹ AB232628⁵ AL669901⁵ (see all 11)
chicken (Gallus gallus)	RAB33A¹	--	RAB33A, member RAS oncogene family	82.69(n) 88.46(a)	769358 XM_001231924.1 XP_001231925.1

About this table Species with no ortholog for RAB33A

ENSEMBL Gene Tree for RAB33A

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
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Paralogs for RAB33A gene

RAB42² RAB33B²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/68 NCBI SNPs in RAB33A are shown (see all 68 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 33)

AB	SNP ID	Valid	Chr X pos	Sequence	Recs	AA Chg	Type	More	Recs	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--			--
	rs209555^1,2	C,F,H	129132142(-)	`TGTTTC/ATTTTA`	1	--	ng5¹		10	EA NA EU WA	605
	rs12842875^1,2	H	129132040(+)	`CCCTGA/TCCTTG`	1	--	ng5¹		4	EU EA WA	414
	rs5977219^1,2	H	129132944(+)	`TCCCTT/GTATCC`	1	--	ng5¹		4	EU EA WA	410
	rs209548^1,2	A,C,F,H,O	129136971(-)	`TATTGC/TCCTGT`	1	--	int¹		14	EA NA EU WA	870
	rs209553^1,2	A,C,F,H,O	129134373(-)	`CAAGCA/GGTAGA`	1	--	int¹		7	EU EA WA NA	560
	rs209551^1,2	A,C,F,H,O	129136007(-)	`TCCTTT/CGGAAT`	1	--	int¹		7	EU EA WA NA	560
	rs209552^1,2	A,C,F,H	129135777(-)	`GTTAGA/GAGAGA`	1	--	int¹ trp³		16	NA EA NS EU WA	970
	rs209549^1,2	A,C,F,H	129136861(-)	`GGCTCA/GAGAGT`	1	--	int¹		4	EU EA WA	418
--	rs209547^1,2	A,C,F,H	129137528(-)	`tggatC/Tacaga`	1	--	int¹		7	NA EA EU WA	666
	rs7052250^1,2	A,F,H	129141676(+)	`GAGGCG/ATGAGC`	1	--	int¹		4	EU EA WA	418

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HapMap Linkage Disequilibrium images for RAB33A (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 300333

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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9 PubMed articles for RAB33A gene:

Molecular cloning of a cDNA encoding a novel small GTP-binding protein. (PubMed id 7688322)^{2, 3, 4} Koda T. and Kakinuma M. (1993)
The DNA sequence of the human X chromosome. (PubMed id 15772651)^{3, 4} Ross M.T.... Bentley D.R. (2005)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
A novel Rab GTPase, Rab33B, is ubiquitously expressed and localized to the medial Golgi cisternae. (PubMed id 9512502)^{2, 3} Zheng J.Y....Kakinuma M. (1998)
Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)³ Rual J.F....Vidal M. (2005)
Ras-associated small GTPase 33A, a novel T cell factor, is down-regulated in patients with tuberculosis. (PubMed id 16136464)³ Jacobsen M....Kaufmann S.H. (2005)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)³ Ota T....Sugano S. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Rab GTPases, directors of vesicle docking. (PubMed id 9712825)³ Schimmoller F....Pfeffer S.R. (1998)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 9363	HGNC: 9773	AceView: RAB33A	Ensembl:ENSG00000134594	euGenes: HUgn9363
ECgene: RAB33A	H-InvDB: RAB33A

(According to HUGE)
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(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
ATLAS Chromosomes in Cancer entry for RAB33A	Genetics and Cytogenetics in Oncology and Haematology

Licensable Technologies for RAB33A
(Available from WIS Yeda, Salk, Tufts)

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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for RAB33A:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for RAB33A-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for RAB33A		Antibodies for RAB33A
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for RAB33A		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

	Recombinant Proteins (RAB33A)
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	Drugs for RAB33A
	Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies

Antibodies for RAB33A

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RAB33A Gene

protein-coding GIFtS: 59

Aliases &
Descriptions
for RAB33A

Summaries
for RAB33A

Genomic Location
for RAB33A

Proteins
for RAB33A

Protein Domains/
Families
for RAB33A

Gene Function
for RAB33A

Pathways & Interactions
for RAB33A

Drugs & Compounds
for RAB33A

Transcripts
for RAB33A

Expression
for RAB33A

Orthologs
for RAB33A

Paralogs
for RAB33A

SNPs/Variants
for RAB33A

Disorders & Mutations
for RAB33A

Medical News
for RAB33A

Publications
for RAB33A

Search for RAB33A

Genome Databases showing RAB33A

Other Databases showing RAB33A

Specialized Databases showing RAB33A

Licensable Technologies
for RAB33A

Services
for RAB33A

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

RAB33A Gene

protein-coding GIFtS: 59

Aliases & Descriptionsfor RAB33A

Summariesfor RAB33A

Genomic Locationfor RAB33A

Proteinsfor RAB33A

Protein Domains/Familiesfor RAB33A

Gene Functionfor RAB33A

Pathways & Interactionsfor RAB33A

Drugs & Compoundsfor RAB33A

Transcriptsfor RAB33A

Expression for RAB33A

Orthologsfor RAB33A

Paralogsfor RAB33A

SNPs/Variantsfor RAB33A

Disorders & Mutationsfor RAB33A

Medical Newsfor RAB33A

Publicationsfor RAB33A

Search for RAB33A

Genome Databases showing RAB33A

Other Databases showing RAB33A

Specialized Databases showing RAB33A

Licensable Technologiesfor RAB33A

Servicesfor RAB33A

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for RAB33A

Summaries
for RAB33A

Genomic Location
for RAB33A

Proteins
for RAB33A

Protein Domains/
Families
for RAB33A

Gene Function
for RAB33A

Pathways & Interactions
for RAB33A

Drugs & Compounds
for RAB33A

Transcripts
for RAB33A

Expression
for RAB33A

Orthologs
for RAB33A

Paralogs
for RAB33A

SNPs/Variants
for RAB33A

Disorders & Mutations
for RAB33A

Medical News
for RAB33A

Publications
for RAB33A

Licensable Technologies
for RAB33A

Services
for RAB33A