Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RAB30-AS1 Gene

Subcategory (RNA class) for RAB30-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAB30-AS1 Gene

  • RAB30 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for RAB30-AS1 Gene

Previous GeneCards Identifiers for RAB30-AS1 Gene

  • GC11P082787

Summaries for RAB30-AS1 Gene

GeneCards Summary for RAB30-AS1 Gene

RAB30-AS1 (RAB30 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB30-AS1 Gene

Genomics for RAB30-AS1 Gene

Regulatory Elements for RAB30-AS1 Gene

Enhancers for RAB30-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F083068 1.1 ENCODE 28.3 -0.3 -347 5.5 HDGF PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 RAB30-AS1 LOC100506282 ENSG00000254551 ENSG00000254676 PCF11 ENSG00000254522 SNORA70E ENSG00000254698 RAB30 GC11M083042
GH11F082993 1.1 Ensembl ENCODE 20.1 -76.1 -76054 4.3 HDGF EBF1 ZIC2 RAD21 ZBTB40 RELA POLR2A SCRT2 EED ZNF143 RAB30 RAB30-AS1 ENSG00000254698 ENSG00000254522 SNORA70E PRCP DDIAS GC11M082975
GH11F083023 1.1 Ensembl ENCODE 19.7 -47.3 -47266 2.0 ELF3 RAD21 DNMT3B RARA RFX5 THAP11 SP5 CEBPB MAFF MIER3 RAB30-AS1 RAB30 ENSG00000254698 GC11M082975
GH11F083092 1.3 Ensembl ENCODE 16 +20.9 20908 1.8 ATF1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF48 ZNF2 YY1 SLC30A9 RAB30-AS1 ENSG00000255503 ENSG00000279900
GH11F082683 0.8 ENCODE 21.9 -389.7 -389673 0.2 CTCF MAX RAD21 ZKSCAN1 ZNF316 CTBP1 ZNF366 ZNF239 SMC3 ZNF207 RAB30-AS1 ENSG00000254676 RAB30 RPS28P7 ENSG00000255246
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RAB30-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RAB30-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000110910 -366 3401 HDGF PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for RAB30-AS1 Gene

Chromosome:
11
Start:
83,072,066 bp from pter
End:
83,106,719 bp from pter
Size:
34,654 bases
Orientation:
Plus strand

Genomic View for RAB30-AS1 Gene

Genes around RAB30-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB30-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB30-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB30-AS1 Gene

Proteins for RAB30-AS1 Gene

Post-translational modifications for RAB30-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAB30-AS1 Gene

Domains & Families for RAB30-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAB30-AS1 Gene

Function for RAB30-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAB30-AS1 Gene

Localization for RAB30-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAB30-AS1 Gene

Pathways & Interactions for RAB30-AS1 Gene

SuperPathways for RAB30-AS1 Gene

No Data Available

Interacting Proteins for RAB30-AS1 Gene

Gene Ontology (GO) - Biological Process for RAB30-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAB30-AS1 Gene

Transcripts for RAB30-AS1 Gene

mRNA/cDNA for RAB30-AS1 Gene

(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAB30-AS1 Gene

No ASD Table

Relevant External Links for RAB30-AS1 Gene

GeneLoc Exon Structure for
RAB30-AS1
ECgene alternative splicing isoforms for
RAB30-AS1

Expression for RAB30-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RAB30-AS1 Gene

genes like me logo Genes that share expression patterns with RAB30-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RAB30-AS1 Gene

Orthologs for RAB30-AS1 Gene

Evolution for RAB30-AS1 Gene

ENSEMBL:
Gene Tree for RAB30-AS1 (if available)
TreeFam:
Gene Tree for RAB30-AS1 (if available)

No data available for Orthologs for RAB30-AS1 Gene

Paralogs for RAB30-AS1 Gene

No data available for Paralogs for RAB30-AS1 Gene

Variants for RAB30-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAB30-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs112049094 -- 83,070,236(+) CTGTT(G/T)ATCTT intron-variant, upstream-variant-2KB
rs112578572 -- 83,070,206(+) TCAAC(A/G)GAGAG intron-variant, upstream-variant-2KB
rs112700232 -- 83,071,120(+) CATTA(A/T)AGGAC intron-variant, upstream-variant-2KB
rs1132314 -- 83,074,128(+) TTTGA(A/G)GCTGC downstream-variant-500B
rs11342816 -- 83,071,554(+) CTTTT(-/C)CCCTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RAB30-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv414 CNV insertion 18451855
esv33531 CNV loss 17666407

Relevant External Links for RAB30-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB30-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAB30-AS1 Gene

Disorders for RAB30-AS1 Gene

Relevant External Links for RAB30-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAB30-AS1

No disorders were found for RAB30-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB30-AS1 Gene

Publications for RAB30-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RAB30-AS1 Gene

Sources for RAB30-AS1 Gene

Content
Loading form....