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Aliases for RAB30-AS1 Gene

Subcategory (RNA class) for RAB30-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAB30-AS1 Gene

  • RAB30 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for RAB30-AS1 Gene

Previous GeneCards Identifiers for RAB30-AS1 Gene

  • GC11P082787

Summaries for RAB30-AS1 Gene

GeneCards Summary for RAB30-AS1 Gene

RAB30-AS1 (RAB30 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RAB30-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB30-AS1 Gene

Genomics for RAB30-AS1 Gene

Regulatory Elements for RAB30-AS1 Gene

Enhancers for RAB30-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H083068 1.4 ENCODE dbSUPER 28.3 -0.3 -347 5 HDGF FOXA2 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 RAB30-AS1 LOC100506282 ENSG00000254676 PCF11 ENSG00000254522 SNORA70E ENSG00000254698 RAB30 GC11M083042
GH11H082993 1.4 Ensembl ENCODE dbSUPER 20.1 -76.1 -76054 4 HDGF RB1 BATF RAD21 SCRT2 ZNF143 ZNF207 FOS ATF7 ETV6 RAB30 RAB30-AS1 ENSG00000254698 ENSG00000254522 SNORA70E PRCP DDIAS GC11M082975
GH11H082988 1.2 ENCODE dbSUPER 17.4 -82.9 -82947 1 FOXA2 ATF1 ARID4B DMAP1 TCF12 MXD4 NFYC PPARG NFIL3 MIER3 RAB30-AS1 RAB30 ENSG00000254698 ENSG00000254522 SNORA70E DDIAS GC11M082975
GH11H082959 1.2 Ensembl ENCODE dbSUPER 17.2 -111.6 -111575 2 PKNOX1 FEZF1 ZIC2 ATF7 ETV6 RUNX3 IKZF2 CREM NR2F1 CBFB DDIAS RAB30-AS1 RAB30 ENSG00000254698 ENSG00000254522 SNORA70E PRCP ENSG00000242279
GH11H083006 1.6 Ensembl ENCODE dbSUPER 11.3 -64.3 -64250 2 ARNT ARID4B DMAP1 ZNF766 SP5 JUNB ZNF592 KAT8 SMARCA4 RCOR2 PCF11 DDIAS ENSG00000254551 ENSG00000254676 ENSG00000254698 SNORA70E ENSG00000254522 RAB30 RAB30-AS1 GC11M082975
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RAB30-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RAB30-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000042777 -466 3201 HDGF FOXA2 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for RAB30-AS1 Gene

Chromosome:
11
Start:
83,072,066 bp from pter
End:
83,106,719 bp from pter
Size:
34,654 bases
Orientation:
Plus strand

Genomic View for RAB30-AS1 Gene

Genes around RAB30-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB30-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB30-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB30-AS1 Gene

Proteins for RAB30-AS1 Gene

Post-translational modifications for RAB30-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAB30-AS1 Gene

Domains & Families for RAB30-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAB30-AS1 Gene

Function for RAB30-AS1 Gene

Phenotypes From GWAS Catalog for RAB30-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAB30-AS1 Gene

Localization for RAB30-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAB30-AS1 Gene

Pathways & Interactions for RAB30-AS1 Gene

SuperPathways for RAB30-AS1 Gene

No Data Available

Interacting Proteins for RAB30-AS1 Gene

Gene Ontology (GO) - Biological Process for RAB30-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAB30-AS1 Gene

Drugs & Compounds for RAB30-AS1 Gene

No Compound Related Data Available

Transcripts for RAB30-AS1 Gene

mRNA/cDNA for RAB30-AS1 Gene

(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAB30-AS1 Gene

No ASD Table

Relevant External Links for RAB30-AS1 Gene

GeneLoc Exon Structure for
RAB30-AS1
ECgene alternative splicing isoforms for
RAB30-AS1

Expression for RAB30-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAB30-AS1 Gene

genes like me logo Genes that share expression patterns with RAB30-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAB30-AS1 Gene

Orthologs for RAB30-AS1 Gene

Evolution for RAB30-AS1 Gene

ENSEMBL:
Gene Tree for RAB30-AS1 (if available)
TreeFam:
Gene Tree for RAB30-AS1 (if available)

No data available for Orthologs for RAB30-AS1 Gene

Paralogs for RAB30-AS1 Gene

No data available for Paralogs for RAB30-AS1 Gene

Variants for RAB30-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAB30-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000388249 -- 83,072,181(+) GGGAC(A/G)GTGAG intron-variant, upstream-variant-2KB
rs1000607557 -- 83,072,048(+) AATGC(C/T)CCAAG upstream-variant-2KB
rs1000899314 -- 83,070,351(+) AAATA(C/T)CACAC intron-variant, upstream-variant-2KB
rs1001619840 -- 83,071,592(+) CCCCC(C/T)CACCT intron-variant, upstream-variant-2KB
rs1003187031 -- 83,070,725(+) CGTTT(-/A)AAAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RAB30-AS1 Gene

Variant ID Type Subtype PubMed ID
esv33531 CNV loss 17666407
nsv414 CNV insertion 18451855

Relevant External Links for RAB30-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB30-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAB30-AS1 Gene

Disorders for RAB30-AS1 Gene

Relevant External Links for RAB30-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAB30-AS1

No disorders were found for RAB30-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB30-AS1 Gene

Publications for RAB30-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for RAB30-AS1 Gene

Sources for RAB30-AS1 Gene

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