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Aliases for RAB2B Gene

Aliases for RAB2B Gene

  • RAB2B, Member RAS Oncogene Family 2 3

External Ids for RAB2B Gene

Previous GeneCards Identifiers for RAB2B Gene

  • GC14M015714
  • GC14M019917
  • GC14M020997
  • GC14M021927
  • GC14M002046

Summaries for RAB2B Gene

Entrez Gene Summary for RAB2B Gene

  • Members of the Rab protein family are nontransforming monomeric GTP-binding proteins of the Ras superfamily that contain 4 highly conserved regions involved in GTP binding and hydrolysis. Rab proteins are prenylated, membrane-bound proteins involved in vesicular fusion and trafficking; see MIM 179508.[supplied by OMIM, Apr 2006]

GeneCards Summary for RAB2B Gene

RAB2B (RAB2B, Member RAS Oncogene Family) is a Protein Coding gene. Among its related pathways are Sertoli-Sertoli Cell Junction Dynamics. GO annotations related to this gene include GTP binding and GTPase activity. An important paralog of this gene is RAB42.

UniProtKB/Swiss-Prot for RAB2B Gene

  • Required for protein transport from the endoplasmic reticulum to the Golgi complex.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB2B Gene

Genomics for RAB2B Gene

Regulatory Elements for RAB2B Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RAB2B Gene

Chromosome:
14
Start:
21,459,020 bp from pter
End:
21,476,973 bp from pter
Size:
17,954 bases
Orientation:
Minus strand

Genomic View for RAB2B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RAB2B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB2B Gene

Proteins for RAB2B Gene

  • Protein details for RAB2B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WUD1-RAB2B_HUMAN
    Recommended name:
    Ras-related protein Rab-2B
    Protein Accession:
    Q8WUD1
    Secondary Accessions:
    • B2RD03
    • D3DS24
    • Q6NZ33

    Protein attributes for RAB2B Gene

    Size:
    216 amino acids
    Molecular mass:
    24214 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RAB2B Gene

    Alternative splice isoforms for RAB2B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RAB2B Gene

Proteomics data for RAB2B Gene at MOPED

Post-translational modifications for RAB2B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RAB2B Gene

Antibody Products

No data available for DME Specific Peptides for RAB2B Gene

Domains & Families for RAB2B Gene

Gene Families for RAB2B Gene

Protein Domains for RAB2B Gene

Graphical View of Domain Structure for InterPro Entry

Q8WUD1

UniProtKB/Swiss-Prot:

RAB2B_HUMAN :
  • Belongs to the small GTPase superfamily. Rab family.
Family:
  • Belongs to the small GTPase superfamily. Rab family.
genes like me logo Genes that share domains with RAB2B: view

Function for RAB2B Gene

Molecular function for RAB2B Gene

UniProtKB/Swiss-Prot Function:
Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Gene Ontology (GO) - Molecular Function for RAB2B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003924 GTPase activity IBA --
GO:0005515 protein binding IPI 25416956
GO:0005525 GTP binding IEA --
genes like me logo Genes that share ontologies with RAB2B: view

Phenotypes for RAB2B Gene

GenomeRNAi human phenotypes for RAB2B:
genes like me logo Genes that share phenotypes with RAB2B: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for RAB2B Gene

Localization for RAB2B Gene

Subcellular locations from UniProtKB/Swiss-Prot for RAB2B Gene

Cell membrane; Lipid-anchor; Cytoplasmic side. Endoplasmic reticulum membrane. Golgi apparatus membrane.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RAB2B Gene COMPARTMENTS Subcellular localization image for RAB2B gene
Compartment Confidence
extracellular 5
endoplasmic reticulum 3
golgi apparatus 3
plasma membrane 3

Gene Ontology (GO) - Cellular Components for RAB2B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane IBA --
GO:0005622 intracellular --
GO:0005789 endoplasmic reticulum membrane IBA --
GO:0005886 plasma membrane IEA --
GO:0016020 membrane --
genes like me logo Genes that share ontologies with RAB2B: view

Pathways & Interactions for RAB2B Gene

genes like me logo Genes that share pathways with RAB2B: view

Pathways by source for RAB2B Gene

1 Qiagen pathway for RAB2B Gene

Gene Ontology (GO) - Biological Process for RAB2B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006886 intracellular protein transport IBA --
GO:0006913 nucleocytoplasmic transport --
GO:0007165 signal transduction --
GO:0007264 small GTPase mediated signal transduction --
GO:0015031 protein transport --
genes like me logo Genes that share ontologies with RAB2B: view

No data available for SIGNOR curated interactions for RAB2B Gene

Drugs & Compounds for RAB2B Gene

No Compound Related Data Available

Transcripts for RAB2B Gene

Unigene Clusters for RAB2B Gene

RAB2B, member RAS oncogene family:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAB2B Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8a · 8b
SP1: - - -
SP2: - - - -
SP3: - -
SP4: - -
SP5: -

Relevant External Links for RAB2B Gene

GeneLoc Exon Structure for
RAB2B
ECgene alternative splicing isoforms for
RAB2B

Expression for RAB2B Gene

mRNA expression in normal human tissues for RAB2B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for RAB2B Gene

This gene is overexpressed in Brain (23.5) and Fetal Brain (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for RAB2B Gene



SOURCE GeneReport for Unigene cluster for RAB2B Gene Hs.22399

mRNA Expression by UniProt/SwissProt for RAB2B Gene

Q8WUD1-RAB2B_HUMAN
Tissue specificity: Expressed in kidney, prostate, lung, liver, thymus, colon, pancreas, and skeletal muscle, and low levels in placenta. Not detected in heart, brain, spleen, testis, ovary, small intestine and leukocyte
genes like me logo Genes that share expression patterns with RAB2B: view

Protein tissue co-expression partners for RAB2B Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for RAB2B Gene

Orthologs for RAB2B Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RAB2B Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RAB2B 35
  • 94.44 (n)
  • 96.76 (a)
RAB2B 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RAB2B 35
  • 93.67 (n)
  • 97.69 (a)
RAB2B 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rab2b 35
  • 91.2 (n)
  • 94.91 (a)
Rab2b 16
Rab2b 36
  • 95 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RAB2B 35
  • 99.38 (n)
  • 100 (a)
RAB2B 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rab2b 35
  • 91.47 (n)
  • 95.81 (a)
oppossum
(Monodelphis domestica)
Mammalia RAB2B 36
  • 93 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RAB2B 36
  • 74 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 36
  • 49 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia RAB2B 36
  • 67 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rab2b 35
  • 74.11 (n)
  • 88.37 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.2749 35
zebrafish
(Danio rerio)
Actinopterygii rab11al 36
  • 46 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta Rab2 36
  • 83 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea unc-108 36
  • 86 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YPT31 36
  • 41 (a)
ManyToMany
YPT32 36
  • 39 (a)
ManyToMany
barley
(Hordeum vulgare)
Liliopsida Hv.5672 35
rice
(Oryza sativa)
Liliopsida Os04g0470100 35
  • 68.28 (n)
  • 80.1 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 29 (a)
ManyToMany
Species with no ortholog for RAB2B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RAB2B Gene

ENSEMBL:
Gene Tree for RAB2B (if available)
TreeFam:
Gene Tree for RAB2B (if available)

Paralogs for RAB2B Gene

genes like me logo Genes that share paralogs with RAB2B: view

Variants for RAB2B Gene

Sequence variations from dbSNP and Humsavar for RAB2B Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs1045811 -- 21,460,224(-) TTGCA(A/G)TTACC utr-variant-3-prime, nc-transcript-variant
rs1045812 -- 21,460,179(-) GCCTC(A/G)GAATT utr-variant-3-prime, nc-transcript-variant
rs1045813 -- 21,460,175(-) CGGAA(C/T)TTCAT utr-variant-3-prime, nc-transcript-variant
rs1045842 -- 21,459,117(-) GTCCC(A/G)TTCTC utr-variant-3-prime, nc-transcript-variant
rs3790070 -- 21,458,688(+) AACAA(A/C)AAAAA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RAB2B Gene

Variant ID Type Subtype PubMed ID
esv2422459 CNV Duplication 17116639

Variation tolerance for RAB2B Gene

Residual Variation Intolerance Score: 25.52% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.82; 17.11% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RAB2B Gene

HapMap Linkage Disequilibrium report
RAB2B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RAB2B Gene

Disorders for RAB2B Gene

Relevant External Links for RAB2B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAB2B
genes like me logo Genes that share disorders with RAB2B: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB2B Gene

Publications for RAB2B Gene

  1. Molecular cloning and characterization of a novel human Rab (Rab2B) gene. (PMID: 12376746) Ni X. … Mao Y. (J. Hum. Genet. 2002) 2 23 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 67
  3. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. (PMID: 23533145) Principe S. … Drake R.R. (Proteomics 2013) 67
  4. Bcl2-associated athanogene 3 interactome analysis reveals a new role in modulating proteasome activity. (PMID: 23824909) Chen Y. … Ge F. (Mol. Cell Proteomics 2013) 67
  5. PKCI/ promotes oncogenic functions of ATF2 in the nucleus while blocking its apoptotic function at mitochondria. (PMID: 22304920) Lau E. … Ronai Z.A. (Cell 2012) 67

Products for RAB2B Gene

Sources for RAB2B Gene

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