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Aliases for RAB2A Gene

Aliases for RAB2A Gene

  • RAB2A, Member RAS Oncogene Family 2 3
  • RAB2, Member RAS Oncogene Family 2 3
  • RAB2 3 4
  • Small GTP Binding Protein RAB2A 3
  • Ras-Related Protein Rab-2A 3
  • RAB2, 6
  • LHX 3

External Ids for RAB2A Gene

Previous HGNC Symbols for RAB2A Gene

  • RAB2

Previous GeneCards Identifiers for RAB2A Gene

  • GC08P061593
  • GC08P061429
  • GC08P056918

Summaries for RAB2A Gene

Entrez Gene Summary for RAB2A Gene

  • The protein encoded by this gene belongs to the Rab family, members of which are small molecular weight guanosine triphosphatases (GTPases) that contain highly conserved domains involved in GTP binding and hydrolysis. The Rabs are membrane-bound proteins, involved in vesicular fusion and trafficking. This protein is a resident of pre-Golgi intermediates, and is required for protein transport from the endoplasmic reticulum (ER) to the Golgi complex. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011]

GeneCards Summary for RAB2A Gene

RAB2A (RAB2A, Member RAS Oncogene Family) is a Protein Coding gene. Diseases associated with RAB2A include vaginal cancer and duane retraction syndrome. Among its related pathways are Cell Cycle, Mitotic and Cell Cycle, Mitotic. GO annotations related to this gene include GTP binding and GDP binding. An important paralog of this gene is RAB42.

UniProtKB/Swiss-Prot for RAB2A Gene

  • Required for protein transport from the endoplasmic reticulum to the Golgi complex

Gene Wiki entry for RAB2A Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB2A Gene

Genomics for RAB2A Gene

Regulatory Elements for RAB2A Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RAB2A Gene

Start:
60,516,857 bp from pter
End:
60,623,644 bp from pter
Size:
106,788 bases
Orientation:
Plus strand

Genomic View for RAB2A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RAB2A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB2A Gene

Proteins for RAB2A Gene

  • Protein details for RAB2A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P61019-RAB2A_HUMAN
    Recommended name:
    Ras-related protein Rab-2A
    Protein Accession:
    P61019
    Secondary Accessions:
    • B2R5W8
    • B4DMQ5
    • P08886

    Protein attributes for RAB2A Gene

    Size:
    212 amino acids
    Molecular mass:
    23546 Da
    Quaternary structure:
    • Interacts with PRKCI.

    Three dimensional structures from OCA and Proteopedia for RAB2A Gene

    Alternative splice isoforms for RAB2A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RAB2A Gene

Proteomics data for RAB2A Gene at MOPED

Post-translational modifications for RAB2A Gene

  • Ubiquitination at Lys56 and Lys165
  • Modification sites at PhosphoSitePlus

Other Protein References for RAB2A Gene

No data available for DME Specific Peptides for RAB2A Gene

Domains for RAB2A Gene

Gene Families for RAB2A Gene

HGNC:
  • RAB :RAB, member RAS oncogene

Suggested Antigen Peptide Sequences for RAB2A Gene

Graphical View of Domain Structure for InterPro Entry

P61019

UniProtKB/Swiss-Prot:

RAB2A_HUMAN :
  • P61019
Family:
  • Belongs to the small GTPase superfamily. Rab family.
genes like me logo Genes that share domains with RAB2A: view

Function for RAB2A Gene

Molecular function for RAB2A Gene

UniProtKB/Swiss-Prot Function: Required for protein transport from the endoplasmic reticulum to the Golgi complex

Gene Ontology (GO) - Molecular Function for RAB2A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003924 GTPase activity IDA 16034420
GO:0005515 protein binding IPI 16189514
GO:0005525 GTP binding IDA 16034420
GO:0019003 GDP binding IDA 16034420
genes like me logo Genes that share ontologies with RAB2A: view
genes like me logo Genes that share phenotypes with RAB2A: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RAB2A

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RAB2A Gene

Localization for RAB2A Gene

Subcellular locations from UniProtKB/Swiss-Prot for RAB2A Gene

Endoplasmic reticulum-Golgi intermediate compartment membrane; Lipid-anchor. Melanosome. Endoplasmic reticulum membrane; Lipid-anchor. Golgi apparatus membrane; Lipid-anchor. Note=Identified by mass spectrometry in melanosome fractions from stage I to stage IV.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RAB2A Gene COMPARTMENTS Subcellular localization image for RAB2A gene
Compartment Confidence
endoplasmic reticulum 5
golgi apparatus 5
cytosol 3
endosome 2
nucleus 2
extracellular 1
mitochondrion 1
plasma membrane 1
vacuole 1

Gene Ontology (GO) - Cellular Components for RAB2A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane TAS --
GO:0005622 intracellular --
GO:0005634 nucleus IDA 21630459
GO:0005737 cytoplasm --
GO:0005765 lysosomal membrane IDA 17897319
genes like me logo Genes that share ontologies with RAB2A: view

Pathways for RAB2A Gene

genes like me logo Genes that share pathways with RAB2A: view

Pathways by source for RAB2A Gene

Gene Ontology (GO) - Biological Process for RAB2A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000278 mitotic cell cycle TAS --
GO:0006184 obsolete GTP catabolic process --
GO:0006886 intracellular protein transport IBA --
GO:0006888 NOT ER to Golgi vesicle-mediated transport IMP 17684057
GO:0006913 nucleocytoplasmic transport --
genes like me logo Genes that share ontologies with RAB2A: view

Compounds for RAB2A Gene

(2) Novoseek inferred chemical compound relationships for RAB2A Gene

Compound -log(P) Hits PubMed IDs
vtcs 94.3 7
glyceraldehyde 3-phosphate 66.1 6
genes like me logo Genes that share compounds with RAB2A: view

Transcripts for RAB2A Gene

Unigene Clusters for RAB2A Gene

RAB2A, member RAS oncogene family:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RAB2A

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RAB2A Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9
SP1: - - - -
SP2: - -
SP3: - - -
SP4: -
SP5:

Relevant External Links for RAB2A Gene

GeneLoc Exon Structure for
RAB2A
ECgene alternative splicing isoforms for
RAB2A

Expression for RAB2A Gene

mRNA expression in normal human tissues for RAB2A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RAB2A Gene

SOURCE GeneReport for Unigene cluster for RAB2A Gene Hs.369017

genes like me logo Genes that share expressions with RAB2A: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RAB2A Gene

Orthologs for RAB2A Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RAB2A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RAB2A 35
  • 100 (n)
  • 100 (a)
RAB2A 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RAB2A 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RAB2A 35
  • 96.23 (n)
  • 100 (a)
RAB2A 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rab2a 35
  • 91.98 (n)
  • 98.58 (a)
Rab2a 16
Rab2a 36
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RAB2A 36
  • 100 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RAB2A 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rab2a 35
  • 92.14 (n)
  • 98.58 (a)
chicken
(Gallus gallus)
Aves RAB2A 35
  • 87.42 (n)
  • 99.53 (a)
RAB2A 36
  • 100 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RAB2A 36
  • 99 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rab2a 35
  • 83.16 (n)
  • 96.94 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.890 35
zebrafish
(Danio rerio)
Actinopterygii Dr.20914 35
rab2a 35
  • 81.76 (n)
  • 98.11 (a)
rab2a 36
  • 98 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005393 35
  • 72.93 (n)
  • 93.4 (a)
fruit fly
(Drosophila melanogaster)
Insecta Rab2 35
  • 73.94 (n)
  • 93.91 (a)
Rab2 36
  • 90 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea unc-108 35
  • 74.49 (n)
  • 92.35 (a)
unc-108 36
  • 87 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YPT31 36
  • 41 (a)
ManyToMany
YPT32 36
  • 39 (a)
ManyToMany
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.232 35
soybean
(Glycine max)
eudicotyledons Gma.6653 35
thale cress
(Arabidopsis thaliana)
eudicotyledons RABB1C 35
  • 74.29 (n)
  • 84.57 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.10692 35
rice
(Oryza sativa)
Liliopsida Os.8483 35
Os02g0586400 35
  • 71.45 (n)
  • 82.05 (a)
wheat
(Triticum aestivum)
Liliopsida Ta.5309 35
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5043 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.388 36
  • 90 (a)
OneToOne
Species with no ortholog for RAB2A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for RAB2A Gene

ENSEMBL:
Gene Tree for RAB2A (if available)
TreeFam:
Gene Tree for RAB2A (if available)

Paralogs for RAB2A Gene

Pseudogenes.org Pseudogenes for RAB2A Gene

genes like me logo Genes that share paralogs with RAB2A: view

Variants for RAB2A Gene

Sequence variations from dbSNP and Humsavar for RAB2A Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs7413 -- 60,621,869(+) GATGG(A/G)AAATC utr-variant-3-prime
rs9437 -- 60,622,858(+) CTACC(A/G)TTAAG utr-variant-3-prime
rs586377 -- 60,604,338(+) ttata(A/G)cagcg intron-variant
rs587380 -- 60,553,847(+) TGGTA(A/G)AATCT intron-variant
rs592014 -- 60,601,568(-) TTGAG(C/T)TTAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RAB2A Gene

Variant ID Type Subtype PubMed ID
esv2737065 CNV Deletion 23290073
esv2737066 CNV Deletion 23290073
esv2737067 CNV Deletion 23290073
esv273735 CNV Insertion 20981092
esv269471 CNV Insertion 20981092
nsv6218 CNV Loss 18451855
esv2737068 CNV Deletion 23290073
nsv831335 CNV Loss 17160897
nsv890945 CNV Gain 21882294
esv270573 CNV Insertion 20981092
esv272923 CNV Insertion 20981092
esv1615811 CNV Insertion 17803354

Relevant External Links for RAB2A Gene

HapMap Linkage Disequilibrium report
RAB2A
Human Gene Mutation Database (HGMD)
RAB2A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RAB2A Gene

Disorders for RAB2A Gene

MalaCards: The human disease database

MalaCards: The human disease database. (2) Diseases for RAB2A Gene including...

Search for RAB2A Gene in MalaCards »

(2) University of Copenhagen DISEASES for RAB2A Gene

(1) Novoseek inferred disease relationships for RAB2A Gene

Disease -log(P) Hits PubMed IDs
sezary syndrome 79.3 2

Relevant External Links for RAB2A

Genetic Association Database (GAD)
RAB2A
Human Genome Epidemiology (HuGE) Navigator
RAB2A
genes like me logo Genes that share disorders with RAB2A: view

No data available for UniProtKB/Swiss-Prot for RAB2A Gene

Publications for RAB2A Gene

  1. Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes. (PMID: 17081065) Chi A. … Hunt D.F. (J. Proteome Res. 2006) 3 4
  2. Isoprenoid modification of rab proteins terminating in CC or CXC motifs. (PMID: 1648736) Khosravi-Far R. … Der C.J. (Proc. Natl. Acad. Sci. U.S.A. 1991) 3 4
  3. The human Rab genes encode a family of GTP-binding proteins related to yeast YPT1 and SEC4 products involved in secretion. (PMID: 2501306) Zahraoui A. … Tavitian A. (J. Biol. Chem. 1989) 3 4
  4. Nucleotide sequence of a new YPT1-related human cDNA which belongs to the ras gene superfamily. (PMID: 3057444) Tachibana K. … Takano T. (Nucleic Acids Res. 1988) 3 4
  5. Regulation of anterograde transport of adrenergic and angiotensin II receptors by Rab2 and Rab6 GTPases. (PMID: 17716866) Dong C. … Wu G. (Cell. Signal. 2007) 3 23

Products for RAB2A Gene

  • Addgene plasmids for RAB2A

Sources for RAB2A Gene

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