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Aliases for RAB23 Gene

Aliases for RAB23 Gene

  • RAB23, Member RAS Oncogene Family 2 3 5
  • RAB Family Small GTP Binding Protein RAB 23 3
  • HSPC137 3

External Ids for RAB23 Gene

Previous GeneCards Identifiers for RAB23 Gene

  • GC06M057055
  • GC06M057100
  • GC06M056887

Summaries for RAB23 Gene

Entrez Gene Summary for RAB23 Gene

  • This gene encodes a small GTPase of the Ras superfamily. Rab proteins are involved in the regulation of diverse cellular functions associated with intracellular membrane trafficking, including autophagy and immune response to bacterial infection. The encoded protein may play a role in central nervous system development by antagonizing sonic hedgehog signaling. Disruption of this gene has been implicated in Carpenter syndrome as well as cancer. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

GeneCards Summary for RAB23 Gene

RAB23 (RAB23, Member RAS Oncogene Family) is a Protein Coding gene. Diseases associated with RAB23 include carpenter syndrome and cole-carpenter syndrome 2. Among its related pathways are Sertoli-Sertoli Cell Junction Dynamics and Hedgehog signaling events mediated by Gli proteins. GO annotations related to this gene include GTP binding and GTPase activity. An important paralog of this gene is RAB7B.

UniProtKB/Swiss-Prot for RAB23 Gene

  • The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. Together with SUFU, prevents nuclear import of GLI1, and thereby inhibits GLI1 transcription factor activity. Regulates GLI1 in differentiating chondrocytes. Likewise, regulates GLI3 proteolytic processing and modulates GLI2 and GLI3 transcription factor activity. Plays a role in autophagic vacuole assembly, and mediates defense against pathogens, such as S.aureus, by promoting their capture by autophagosomes that then merge with lysosomes.

Gene Wiki entry for RAB23 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB23 Gene

Genomics for RAB23 Gene

Regulatory Elements for RAB23 Gene

Promoters for RAB23 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RAB23 on UCSC Golden Path with GeneCards custom track

Genomic Location for RAB23 Gene

Chromosome:
6
Start:
57,186,992 bp from pter
End:
57,222,314 bp from pter
Size:
35,323 bases
Orientation:
Minus strand

Genomic View for RAB23 Gene

Genes around RAB23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB23 Gene

Proteins for RAB23 Gene

  • Protein details for RAB23 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9ULC3-RAB23_HUMAN
    Recommended name:
    Ras-related protein Rab-23
    Protein Accession:
    Q9ULC3
    Secondary Accessions:
    • B2R9I5
    • Q68DJ6
    • Q8NI06
    • Q9P023

    Protein attributes for RAB23 Gene

    Size:
    237 amino acids
    Molecular mass:
    26659 Da
    Quaternary structure:
    • Interacts with SUFU.

neXtProt entry for RAB23 Gene

Proteomics data for RAB23 Gene at MOPED

Post-translational modifications for RAB23 Gene

  • Ubiquitination at Lys 163
  • Modification sites at PhosphoSitePlus

Other Protein References for RAB23 Gene

Antibody Products

No data available for DME Specific Peptides for RAB23 Gene

Domains & Families for RAB23 Gene

Gene Families for RAB23 Gene

Suggested Antigen Peptide Sequences for RAB23 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9ULC3

UniProtKB/Swiss-Prot:

RAB23_HUMAN :
  • Belongs to the small GTPase superfamily. Rab family.
Family:
  • Belongs to the small GTPase superfamily. Rab family.
genes like me logo Genes that share domains with RAB23: view

Function for RAB23 Gene

Molecular function for RAB23 Gene

UniProtKB/Swiss-Prot Function:
The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. Together with SUFU, prevents nuclear import of GLI1, and thereby inhibits GLI1 transcription factor activity. Regulates GLI1 in differentiating chondrocytes. Likewise, regulates GLI3 proteolytic processing and modulates GLI2 and GLI3 transcription factor activity. Plays a role in autophagic vacuole assembly, and mediates defense against pathogens, such as S.aureus, by promoting their capture by autophagosomes that then merge with lysosomes.
genes like me logo Genes that share phenotypes with RAB23: view

Human Phenotype Ontology for RAB23 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for RAB23 Gene

MGI Knock Outs for RAB23:

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Transcription Factor Targets and HOMER Transcription for RAB23 Gene

Localization for RAB23 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RAB23 Gene

Cell membrane; Lipid-anchor; Cytoplasmic side. Cytoplasm. Cytoplasmic vesicle, autophagosome. Endosome membrane. Cytoplasmic vesicle, phagosome. Cytoplasmic vesicle, phagosome membrane; Lipid-anchor; Cytoplasmic side. Note=Recruited to phagosomes containing S.aureus or M.tuberculosis. {ECO:0000269 PubMed:21255211}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RAB23 Gene COMPARTMENTS Subcellular localization image for RAB23 gene
Compartment Confidence
extracellular 5
plasma membrane 5
vacuole 5
cytosol 4
cytoskeleton 3
endosome 3
nucleus 3
golgi apparatus 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for RAB23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005776 autophagosome IDA 22452336
genes like me logo Genes that share ontologies with RAB23: view

Pathways & Interactions for RAB23 Gene

genes like me logo Genes that share pathways with RAB23: view

Pathways by source for RAB23 Gene

1 KEGG pathway for RAB23 Gene
1 Qiagen pathway for RAB23 Gene

Interacting Proteins for RAB23 Gene

SIGNOR curated interactions for RAB23 Gene

Inactivates:

Gene Ontology (GO) - Biological Process for RAB23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006913 nucleocytoplasmic transport IEA --
GO:0006968 cellular defense response IMP 22452336
GO:0007165 signal transduction IEA --
GO:0097094 craniofacial suture morphogenesis IMP 17503333
genes like me logo Genes that share ontologies with RAB23: view

Drugs & Compounds for RAB23 Gene

No Compound Related Data Available

Transcripts for RAB23 Gene

Unigene Clusters for RAB23 Gene

RAB23, member RAS oncogene family:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAB23 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b · 9c
SP1: - - -
SP2:
SP3: - - - - - -
SP4: - - - - -
SP5: -
SP6: - - - -

Relevant External Links for RAB23 Gene

GeneLoc Exon Structure for
RAB23
ECgene alternative splicing isoforms for
RAB23

Expression for RAB23 Gene

mRNA expression in normal human tissues for RAB23 Gene

mRNA differential expression in normal tissues according to GTEx for RAB23 Gene

This gene is overexpressed in Colon - Sigmoid (x4.6) and Bladder (x4.1).

Protein differential expression in normal tissues from HIPED for RAB23 Gene

This gene is overexpressed in Colon muscle (8.6), Uterus (8.6), Prostate (7.4), and Seminal vesicle (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for RAB23 Gene



SOURCE GeneReport for Unigene cluster for RAB23 Gene Hs.555016

genes like me logo Genes that share expression patterns with RAB23: view

Protein tissue co-expression partners for RAB23 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for RAB23 Gene

Orthologs for RAB23 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RAB23 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RAB23 35
  • 99.44 (n)
  • 99.58 (a)
RAB23 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RAB23 36
  • 95 (a)
OneToOne
RAB23 35
  • 89.59 (n)
  • 94.94 (a)
dog
(Canis familiaris)
Mammalia LOC481854 35
  • 93.81 (n)
  • 97.05 (a)
RAB23 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rab23 16
Rab23 36
  • 93 (a)
OneToOne
Rab23 35
  • 86.92 (n)
  • 93.25 (a)
oppossum
(Monodelphis domestica)
Mammalia RAB23 36
  • 94 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RAB23 36
  • 94 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rab23 35
  • 87.48 (n)
  • 93.67 (a)
chicken
(Gallus gallus)
Aves RAB23 36
  • 88 (a)
OneToOne
RAB23 35
  • 80.87 (n)
  • 88.61 (a)
lizard
(Anolis carolinensis)
Reptilia RAB23 36
  • 90 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rab23 35
  • 78.25 (n)
  • 87.29 (a)
Str.15295 35
zebrafish
(Danio rerio)
Actinopterygii rab23 35
  • 71.47 (n)
  • 85.17 (a)
rab23 36
  • 84 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP011565 35
  • 57.81 (n)
  • 63.77 (a)
fruit fly
(Drosophila melanogaster)
Insecta Rab23 35
  • 59.94 (n)
  • 63.85 (a)
CG2108 37
  • 59 (a)
Rab23 36
  • 50 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes TEM1 36
  • 23 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 64 (a)
OneToOne
Species with no ortholog for RAB23:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RAB23 Gene

ENSEMBL:
Gene Tree for RAB23 (if available)
TreeFam:
Gene Tree for RAB23 (if available)

Paralogs for RAB23 Gene

Paralogs for RAB23 Gene

genes like me logo Genes that share paralogs with RAB23: view

Variants for RAB23 Gene

Sequence variations from dbSNP and Humsavar for RAB23 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1040461 - 57,190,556(+) GGTAC(C/T)TGAAT nc-transcript-variant, reference, missense
rs45442500 - 57,210,262(-) CAAGA(A/G)AACCA nc-transcript-variant, reference, missense
VAR_034902 Carpenter syndrome 1 (CRPT1)
rs45479896 - 57,196,547(-) CAGTT(G/T)CCAGT intron-variant, reference, missense
VAR_065294 Carpenter syndrome 1 (CRPT1)

Structural Variations from Database of Genomic Variants (DGV) for RAB23 Gene

Variant ID Type Subtype PubMed ID
nsv462949 CNV Loss 19166990

Variation tolerance for RAB23 Gene

Residual Variation Intolerance Score: 57.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.44; 77.28% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RAB23 Gene

HapMap Linkage Disequilibrium report
RAB23
Human Gene Mutation Database (HGMD)
RAB23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RAB23 Gene

Disorders for RAB23 Gene

MalaCards: The human disease database

(8) MalaCards diseases for RAB23 Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
carpenter syndrome
  • acrocephalopolysyndactyly type ii
cole-carpenter syndrome 2
  • clcrp2
beare-stevenson cutis gyrata syndrome
  • cutis gyrata syndrome of beare-stevenson
acid-labile subunit, deficiency of
  • acid-labile subunit deficiency
synostosis
- elite association - COSMIC cancer census association via MalaCards
Search RAB23 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

RAB23_HUMAN
  • Carpenter syndrome 1 (CRPT1) [MIM:201000]: A rare autosomal recessive disorder characterized by acrocephaly with variable synostosis of the sagittal, lambdoid, and coronal sutures; peculiar facies; brachydactyly of the hands with syndactyly; preaxial polydactyly and syndactyly of the feet; congenital heart defects; growth retardation; mental retardation; hypogenitalism; and obesity. In addition, cerebral malformations, oral and dental abnormalities, coxa valga, genu valgum, hydronephrosis, precocious puberty, and hearing loss may be observed. {ECO:0000269 PubMed:17503333, ECO:0000269 PubMed:21412941}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for RAB23

Genetic Association Database (GAD)
RAB23
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAB23
genes like me logo Genes that share disorders with RAB23: view

No data available for Genatlas for RAB23 Gene

Publications for RAB23 Gene

  1. Rab23 negatively regulates Gli1 transcriptional factor in a Su(Fu)- dependent manner. (PMID: 22365972) Chi S. … Xie J. (Cell. Signal. 2012) 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 3
  4. [Role of Rab23 in invasion and migration of human breast cancer Bcap-37 cells]. (PMID: 23948406) Zhao J. … Chi S. (Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi 2013) 3
  5. A Novel Aberrant Splice Site Mutation in RAB23 Leads to an Eight Nucleotide Deletion in the mRNA and Is Responsible for Carpenter Syndrome in a Consanguineous Emirati Family. (PMID: 23599695) Ben-Salem S. … Al-Gazali L. (Mol Syndromol 2013) 3

Products for RAB23 Gene

Sources for RAB23 Gene

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