RAB21 Gene
protein-coding GIFtS: 53
GCID: GC12P072100
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RAB21, member RAS oncogene family
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Aliases
for RAB21 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| RAB21, Member RAS Oncogene Family1 2 | | KIAA01181 3 5 | | Ras-Related Protein Rab-212 |
Export aliases for RAB21 gene to outside databasesPrevious GC identifers: GC12P071929 GC12P070434 GC12P069197 |
Summaries
for RAB21 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for RAB21:
RAB21 belongs to the RAB family of small GTP-binding proteins that regulate intracellular vesicle targeting (Opdam etal., 2000 (PubMed 10887961)).(supplied by OMIM, Nov 2008)
UniProtKB/Swiss-Prot: RAB21_HUMAN, Q9UL25Function: Regulates integrin internalization and recycling, but does not influence the traffic of endosomallytranslocated receptors in general. As a result, may regulate cell adhesion and migration (By similarity). During themitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successfulcompletion of cytokinesis
Gene Wiki entry for RAB21
|
Genomic Views
for RAB21 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000012.11 NC_018923.1 NT_029419.12
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the RAB21 gene promoter:
Pax-2 Nkx3-1 v1 XBP-1 Pax-2a NF-kappaB C/EBPalpha YY1 Nkx3-1 v2 NF-kappaB2 NF-kappaB1
Other transcription factors
Search SABiosciences Chromatin IP Primers for RAB21
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RAB21 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 12q21.1 Ensembl cytogenetic band: 12q21.1 HGNC cytogenetic band: 12q15RAB21 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 12 GeneLoc Exon Structure GeneLoc location for GC12P072100: view genomic region
(about GC identifiers)
Start:
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72,148,654 bp from pter |
End:
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72,184,699 bp from pter |
Size:
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36,046 bases |
Orientation:
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plus strand |
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Proteins
for RAB21 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: RAB21_HUMAN, Q9UL25 (See
protein sequence)Recommended Name: Ras-related protein Rab-21 precursor Size: 225 amino acids; 24348 Da
Subunit: Interacts with the cytoplasmic tail of integrins ITGA1, ITGA2, ITGA5, ITGA6, ITGA11 and ITGB1 (By similarity).Interacts with RABGEF1 (via VPS9 domain)
Subcellular location: Endoplasmic reticulum membrane; Lipid-anchor (By similarity). Golgi apparatus membrane. Earlyendosome membrane. Cytoplasmic vesicle membrane. Cleavage furrow. Note=In nonpolarized epithelial Caco-2 cells, foundin the endoplasmic reticulum; in polarized cells, observed in vesicles in the apical cytoplasm. During mitosis, inmid-telophase, localized in the ingressing cleavage furrow. In late telophase, detected at the opposite poles of thedaughter cells, in vesicles at the base of lamellipodia formed by the separating daughter cells
5 PDB 3D structures from  and Proteopedia  for RAB21:1YZT (3D)
1YZU (3D)
1Z08 (3D)
1Z0I (3D)
2OT3 (3D)
Secondary accessions: Q14466 Q569H3Explore the universe of human proteins at neXtProt for RAB21: NX_Q9UL25
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9UL25
RAB21 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_055814.1
ENSEMBL proteins: ENSP00000261263
Human Recombinant Protein Products:
Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6): About this table
RAB21 for ontologies About GeneDecksing
RAB21 Antibody Products:
Assay Products for RAB21: |
Protein
Domains /
Families
for RAB21 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
RAB21 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q9UL25ProtoNet protein and cluster: Q9UL25 1 Blocks protein family: IPB001806 Transforming protein P21 RAS signature
UniProtKB/Swiss-Prot: RAB21_HUMAN, Q9UL25Similarity: Belongs to the small GTPase superfamily. Rab family |
Function
for RAB21 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: RAB21_HUMAN, Q9UL25Function: Regulates integrin internalization and recycling, but does not influence the traffic of endosomallytranslocated receptors in general. As a result, may regulate cell adhesion and migration (By similarity). During themitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successfulcompletion of cytokinesis
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RAB21 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RAB21
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: RAB21 (NM_014999) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RAB21 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RAB21 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAB21 |
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view): About this table
RAB21 for ontologies About GeneDecksing
|
Pathways & Interactions
for RAB21 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Sertoli-Sertoli Cell Junction Dynamics | |
1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for RAB21
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RAB21
STRING Interaction
Network Preview (showing 5 interactants - click image to see 6)
5/12 Interacting proteins for RAB21 (Q9UL252, 3 ENSP000002612634) via UniProtKB, MINT, STRING, and/or I2D (see all 12)About this table
Gene Ontology (GO): 3 biological process terms (GO ID links to tree view): About this table
RAB21 for ontologies About GeneDecksing
|
Drugs & Compounds
for RAB21 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for RAB21
Search CenterWatch for drugs/clinical trials and news about RAB21
|
Transcripts
for RAB21 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for RAB21 gene: NM_014999.2 Unigene Cluster for RAB21: RAB21, member RAS oncogene family Hs.524590 [show with all ESTs]Unigene Representative Sequence: BC0091094 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000261263(uc001swt.3) ENST00000358546 ENST00000547246 ENST00000552686
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RAB21 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RAB21
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: RAB21 (NM_014999) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RAB21 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RAB21 |
Additional cDNA sequence: AB075482.1 AF091035.1 BC009109.1 BC021901.1 BC092475.1 D42087.1 8 DOTS entries: DT.209481 DT.91922497 DT.97861767 DT.100826817 DT.65284362 DT.100680561 DT.75102206 DT.121206658 24/221 AceView cDNA sequences (see all 221): CA941131 AW338740 BF060662 AI201113 AW269639 AI310446 BQ686309 BG771050 BE501894 BU616494 BM893555 BM893579 AA922618 CR600765 AI025203 BX499957 CD640776 AI865386 AI274214 CA866159 CD722746 BQ437436 AI304549 AA419555
GeneLoc Exon Structure
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Expression
for RAB21 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| RAB21 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TAATGCAGAT
About this image
See RAB21 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for RAB21
SOURCE GeneReport for Unigene cluster: Hs.524590
UniProtKB/Swiss-Prot: RAB21_HUMAN, Q9UL25Tissue specificity: Widely expressed. In jejunal tissue, predominantly expressed in the apical region of the epithelialcell layer of the villi, weak expression, if any, in the crypt epithelium. Capillary endothelium and some cell typesin the lamina propria also show expression
SABiosciences Custom PCR Arrays for RAB21
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RAB21
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RAB21 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RAB21 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RAB21 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAB21 |
Orthologs
for RAB21 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for RAB21 gene from 7/24 species (see all 24) About this table
ENSEMBL Gene Tree for RAB21 (if available)
TreeFam Gene Tree for RAB21 (if available) |
Paralogs
for RAB21 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for RAB21 gene
- RAB5C2 RAB202 RAB312 ENSG000002672612 RAB5B2 RAB5A2 RAB242 RAB22A2
- RAB172
18/86 SIMAP similar genes for RAB21 using alignment to 1 protein entry: RAB21_HUMAN(see all similar genes):RAB5C RAB19 RAB30 RAB24 DKFZp686J07132 RAB15
RAB5B RAB39B RAB8B RAB11A RAB13 RAB3C
RAB8A RAB22A RANP1 RAB43 RAB33B RAB35
RAB21 for paralogs About GeneDecksing
|
Genomic Variants
for RAB21 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 12 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for RAB21 (72148654 - 72184699 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 3 variations for RAB21
3 CNVs: 3894 2990 8736 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RAB21 |
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Disorders
/ Diseases
for RAB21 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
RAB21 for disorders About GeneDecksing
OMIM gene information: 612398
OMIM disorders: --
1  disease for RAB21: About MalaCardsinsulin resistance
Export disorders for RAB21 gene to outside databases
|
Publications
for RAB21 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for RAB21 gene, integrated from 9 sources (see all 23):
(articles sorted by number of sources associating them with RAB21) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Expression of Rab small GTPases in epithelial Caco-2 cells: Rab21 is an apically located GTP-binding protein in polarised intestinal epithelial cells. (PubMed id 10887961)1, 2, 3 Opdam F.J.M....Fransen J.A.M. (2000)
- Integrin trafficking regulated by Rab21 is necessary for cytokinesis. (PubMed id 18804435)1, 2 Pellinen T.... Ivaska J. (2008)
- Structural basis for Rab GTPase activation by VPS9 domain exchange factors. (PubMed id 17450153)1, 2 Delprato A. and Lambright D.G. (2007)
- Small GTPase Rab21 regulates cell adhesion and controls endosomal traffic of beta1-integrins. (PubMed id 16754960)1, 3 Pellinen T....Ivaska J. (2006)
- Structural basis of family-wide Rab GTPase recognition by rabenosyn- 5. (PubMed id 16034420)1, 2 Eathiraj S.... Lambright D.G. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Evolution of the Rab family of small GTP-binding proteins. (PubMed id 11697911)1, 3 Pereira-Leal J.B. and Seabra M.C. (2001)
- Prediction of the coding sequences of unidentified human genes. III. The coding sequences of 40 new genes (KIAA0081-KIAA0120) deduced by analysis of cDNA clones from human cell line KG-1. (PubMed id 7788527)1, 2 Nagase T....Kotani H. (1995)
- Proteome-wide identification of ubiquitylation sites b y conjugation of engineered lysine-less ubiquitin. (PubMed id 22053931)1 Oshikawa K....Nakayama K.I. (2012)
- A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
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External Searches for RAB21 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing RAB21 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing RAB21 gene
(According to HUGE)
About This Section
| |
Specialized Databases showing RAB21 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for RAB21 gene:
Search GeneIP for patents involving RAB21
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for RAB21 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | OriGene Antibodies for RAB21 | | OriGene shRNA RFP for RAB21 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RAB21 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RAB21 | | | OriGene Protein Over-expression Lysate for RAB21 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for RAB21 | | OriGene 3'-UTR Clone for RAB21 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RAB21 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RAB21 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | OriGene Purified Protein for RAB21 | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for RAB21 | | OriGene Custom Protein Services for RAB21 | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RAB21 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RAB21 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RAB21 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RAB21 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RAB21 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RAB21 |
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 | | | RAB21 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAB21 |
|  |  |  | | | | Search ThermoFisher Antibodies for RAB21 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RAB21 |
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