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RAB15 Gene

protein-coding GIFtS: 51

GC14M064482

RAB15, member RAS onocogene family
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Descriptions
RAB15, member RAS oncogene family ^²
RAB15, member RAS onocogene family ^²
Ras-related protein Rab-15 ^²

External Ids
HGNC: 20150¹
Entrez Gene: 376267²
UniProtKB: P59190³
Ensembl: ENSG00000139998⁷

Search outside databases for aliases for RAB15 gene

Previous GC identifers: GC14M059207 GC14M063402

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: RAB15_HUMAN, P59190

Function: May act in concert with RAB3A in regulating aspects of synaptic vesicle membrane flow

within the nerve terminal (By similarity)

Gene Wiki entry for RAB15

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the RAB15 gene

Entrez Gene cytogenetic band: 14q23.3 Ensembl cytogenetic band: 14q23.3 HGNC cytogenetic band: 14q23.2

RAB15 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure

GeneLoc location for GC14M064482: (about GC identifiers)

Start:	64,482,287 bp from pter
End:	64,508,551 bp from pter
Size:	26,265 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000014.7 NT_026437.11

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: RAB15_HUMAN, P59190 (See protein sequence)

Recommended Name: Ras-related protein Rab-15

Size: 212 amino acids; 24391 Da

Subunit: The GTP bound form of RAB15 interacts with REP15

Subcellular location: Cell membrane; Lipid-anchor; Cytoplasmic side (Potential)

Secondary accessions: Q86TX7 Q8IW89

Alternative splicing: 2 isoforms: P59190-1 P59190-2

REFSEQ proteins: NP_941959.1

ENSEMBL proteins:

ENSP00000267512

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (Rab15)
	Human Recombinant Proteins from Abnova (RAB15)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

1 Gene Ontology (GO) cellular component term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005886	plasma membrane	IEA	--

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Antibodies for RAB15:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for RAB15
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (Rab15), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (RAB15)
	Novus Biologicals Antibody for RAB15

Assays for RAB15:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry P59190

ProtoNet protein and cluster: P59190

4 Blocks protein families:

IPB001806 Transforming protein P21 RAS signature

IPB002041 GTP-binding nuclear protein Ran

IPB003577 Ras small GTPase

IPB003578 Ras small GTPase

UniProtKB/Swiss-Prot: RAB15_HUMAN, P59190

Similarity: Belongs to the small GTPase superfamily. Rab family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (RAB15)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (RAB15)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_198686

Applied Biosystems Silencer® siRNAs for RAB15

Sigma-Aldrich siRNA for RAB15

Sigma-Aldrich shRNA for RAB15

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for RAB15
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_198686
Myc/DDK tagged cDNA clone in CMV expression vector: NM_198686
untagged cDNA clone in CMV expression vector: NM_198686

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_198686

UniProtKB/Swiss-Prot: RAB15_HUMAN, P59190

Function: May act in concert with RAB3A in regulating aspects of synaptic vesicle membrane flow

within the nerve terminal (By similarity)

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000166	nucleotide binding	IEA	--
GO:0005525	GTP binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for RAB15 (Your Favorite Gene powered by Ingenuity)

Arachidonic Acid Metabolism
Glutathione Metabolism

GeneDecks RAB15 for the pathways selected above

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Gene Network Central^TM Interacting Genes and Proteins Network for RAB15

3 Interacting proteins for RAB15 (ENSP00000267512³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
REP15	ENSP00000310335³	STRING (score=.985)
EEA1	ENSP00000317955³	STRING (score=.791)
TFRC	ENSP00000353224³	STRING (score=.78)

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2 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007264	small GTPase mediated signal transduction	IEA	--
GO:0015031	protein transport	IEA	--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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Enzo Life Sciences drugs & compounds for RAB15

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for RAB15

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (RAB15)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (RAB15)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_198686

Sigma-Aldrich siRNA for RAB15

Sigma-Aldrich shRNA for RAB15

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_198686

REFSEQ mRNAs for RAB15 gene:

NM_198686.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_198686

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_198686
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_198686
                                 untagged cDNA clone in CMV expression vector: NM_198686

Additional cDNA sequence:

BC014511.1 BC040679.2 BX248046.1 BX640825.1

10 DOTS entries:

DT.91655154 DT.100715880 DT.454380 DT.92426949 DT.100790904 DT.100714529 DT.97816418 DT.95242640

DT.95257083 DT.100715879

24/120 AceView cDNA sequences (see all 120 ):

AI554311 BX248046 CB158366 BX093757 BM128186 CB044182 BM975016 CK300190

BM551913 BX397019 BX647017 AW027845 BX119534 CA424721 BG057625 BQ067682

BU849866 BE799964 CK819213 BU557274 BF743860 BU552993 BG762841 BM049329

highest scoring ESTs for RAB15:

AA582932 BC040679 AA010873 AA010997 AA380204 AA503244 AA563578 AA568367 AA568687 AA975748

Unigene Cluster for RAB15:

RAB15, member RAS onocogene family

Hs.512492 [show with all ESTs]

Unigene Representative Sequence: NM_198686

GeneLoc Exon Structure

4 Alternative Splicing Database (ASD) splice patterns (SP) for RAB15

ExUns:	1a	·	1b	^	2	^	3	^	4	^	5a	·	5b	^	6a	·	6b	^	7a	·	7b	^	8a	·	8b	·	8c
SP1:													-		-
SP2:					-								-		-
SP3:					-										-
SP4:

About this scheme

ECgene alternative splicing isoforms for RAB15

1 Ensembl transcript including schematic representation:

ENST00000267512

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

RAB15 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for RAB15

¹ / ² / ³

6 probe-sets matching RAB15 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
42831_at²^{, 3}	U95-B	1	1.00	1.00	0.99	0.94	AI201843	0.40	1.00	0.76	1
59697_at²^{, 3}	U133-B	2	1.00	0.97	0.98	1.06	AA582932	0.80	1.00	0.91	1
221810_at²^{, 3}	U133-A	1	1.00	1.00	--	--	AA631242	0.40	1.00	0.76	1
59697_at²^{, 3}	U133-A	2	1.00	0.97	--	--	AA582932	0.80	1.00	0.91	1
221810_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--
59697_at²	U133Plus2	2	1.00	0.97	--	--	--	--	--	--	--

GeneDecks RAB15 for binary patterns associated with the probe-sets selected above

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: TCTTGAGGCC

SOURCE GeneReport for Unigene cluster: Hs.512492

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
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Orthologs for RAB15 gene from 1 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
mouse (Mus musculus)	Rab15⁵	12	RAB15, member RAS oncogene family	--	BY237353

About this table Species with no ortholog for RAB15

ENSEMBL Gene Tree for RAB15

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
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Paralogs for RAB15 gene

ENSG00000206004² RASEF² RAB44²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/138 NCBI SNPs in RAB15 are shown (see all 138 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 108)

AB	SNP ID	Valid	Chr 14 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs10121^1,2	A,C,F,H,O	64482526(-)	`TGGGGC/TATGTC`	1	--	ut3¹ ese³		6		MN EU EA WA	790
	rs3087955^1,2	A,C,F,H	64482501(-)	`GTTAAG/CCAGGC`	1	--	ut3¹		8		MN NA EU EA WA	718
	rs2277501^1,2	A,C,F,H	64482194(-)	`GAAGCG/AGCTCC`	1	--	ng5¹		21		EA NA EU WA	3323
	rs2296326^1,2	A,C,F,H	64484125(-)	`CAACCG/AGGGAG`	1	--	ut3¹		9		MN EU EA WA	1008
	rs2277502^1,2	C,F,H	64482031(-)	`TTATCG/AAGAGG`	1	--	ng5¹		8		EA NA EU WA	2054
--	rs3759681^1,2	C,F,H	64483359(-)	`TAGCTC/TGTAGG`	1	--	ut3¹ ese³		4		EU EA WA	412
	rs2296325^1,2	A,C	64484132(-)	`GAAACA/GGCAAC`	1	--	ut3¹ ese³		0	--	--	--	--
	rs35179634^1,2	C,F	64486823(+)	`ACCTGC/ACGTTT`	1	V/G	mis¹		5		NA EU EA WA	498
	rs8006570^1,2	F,H	64482463(+)	`CAGGTG/ACAGAG`	1	--	ut3¹ ese³		4		EU EA WA	416
	rs3759682^1,2	F,H	64483020(-)	`TTAGAT/CGGTGG`	1	--	ut3¹		5		EA EU WA	1916

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HapMap Linkage Disequilibrium images for RAB15 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

Human Genome Epidemiology Navigator: RAB15 (1 document)

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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10/11 PubMed articles for RAB15 gene (see all 11 ):

Rab15 effector protein: a novel protein for receptor recycling from the endocytic recycling compartment. (PubMed id 16195351)^{3, 4} Strick D.J. and Elferink L.A. (2005)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121)^{3, 4} Heilig R.... Weissenbach J. (2003)
Evolution of the Rab family of small GTP-binding proteins. (PubMed id 11697911)^{2, 3} Pereira-Leal J.B. and Seabra M.C. (2001)
Pathway-based evaluation of 380 candidate genes and lung cancer susceptibility suggests the importance of the cell cycle pathway. (PubMed id 18676680)³ Hosgood H.D....Lan Q. (2008)
Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PubMed id 15146197)³ Brandenberger R.... Stanton L.W. (2004)
Distinct Rab binding specificity of Rim1, Rim2, rabphilin, and Noc2. Identification of a critical determinant of Rab3A/Rab27A recognition by Rim2. (PubMed id 12578829)³ Fukuda M. (2003)
Mammalian suppressor of Sec4 modulates the inhibitory effect of Rab15 during early endocytosis. (PubMed id 12105226)³ Strick D.J....Elferink L.A. (2002)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Rab15 differentially regulates early endocytic trafficking. (PubMed id 10837464)³ Zuk P.A. and Elferink L.A. (2000)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 376267	HGNC: 20150	AceView: RAB15	Ensembl:ENSG00000139998	euGenes: HUgn376267
ECgene: RAB15	H-InvDB: RAB15

(According to HUGE)
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(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for RAB15
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for RAB15:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for RAB15-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for RAB15		Antibodies for RAB15
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for RAB15		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

	Recombinant Proteins (RAB15)
	Antibodies (RAB15)
	Chimera RNAi (RAB15)
	Custom Service for Mouse Mab
	Custom Service for Rabbit Pab from Full-length Protein

Search for Antibodies & Assays

	Recombinant Proteins (Rab15)
	Antibodies (Rab15)

Search OriGene for RAB15

Search Tocris compounds for RAB15

	Drugs for RAB15
	Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies

Antibodies for RAB15

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RAB15 Gene

protein-coding GIFtS: 51

Aliases &
Descriptions
for RAB15

Summaries
for RAB15

Genomic Location
for RAB15

Proteins
for RAB15

Protein Domains/
Families
for RAB15

Gene Function
for RAB15

Pathways & Interactions
for RAB15

Drugs & Compounds
for RAB15

Transcripts
for RAB15

Expression
for RAB15

Orthologs
for RAB15

Paralogs
for RAB15

SNPs/Variants
for RAB15

Disorders & Mutations
for RAB15

Medical News
for RAB15

Publications
for RAB15

Search for RAB15

Genome Databases showing RAB15

Other Databases showing RAB15

Specialized Databases showing RAB15

Licensable Technologies
for RAB15

Services
for RAB15

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

RAB15 Gene

protein-coding GIFtS: 51

Aliases & Descriptionsfor RAB15

Summariesfor RAB15

Genomic Locationfor RAB15

Proteinsfor RAB15

Protein Domains/Familiesfor RAB15

Gene Functionfor RAB15

Pathways & Interactionsfor RAB15

Drugs & Compoundsfor RAB15

Transcriptsfor RAB15

Expression for RAB15

Orthologsfor RAB15

Paralogsfor RAB15

SNPs/Variantsfor RAB15

Disorders & Mutationsfor RAB15

Medical Newsfor RAB15

Publicationsfor RAB15

Search for RAB15

Genome Databases showing RAB15

Other Databases showing RAB15

Specialized Databases showing RAB15

Licensable Technologiesfor RAB15

Servicesfor RAB15

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for RAB15

Summaries
for RAB15

Genomic Location
for RAB15

Proteins
for RAB15

Protein Domains/
Families
for RAB15

Gene Function
for RAB15

Pathways & Interactions
for RAB15

Drugs & Compounds
for RAB15

Transcripts
for RAB15

Expression
for RAB15

Orthologs
for RAB15

Paralogs
for RAB15

SNPs/Variants
for RAB15

Disorders & Mutations
for RAB15

Medical News
for RAB15

Publications
for RAB15

Licensable Technologies
for RAB15

Services
for RAB15