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Aliases for RAB11B-AS1 Gene

Subcategory (RNA class) for RAB11B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAB11B-AS1 Gene

  • RAB11B Antisense RNA 1 2 3 5
  • RAB11B Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RAB11B-AS1 Gene

Previous GeneCards Identifiers for RAB11B-AS1 Gene

  • GC19M008441

Summaries for RAB11B-AS1 Gene

GeneCards Summary for RAB11B-AS1 Gene

RAB11B-AS1 (RAB11B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RAB11B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB11B-AS1 Gene

Genomics for RAB11B-AS1 Gene

GeneHancer (GH) Regulatory Elements for RAB11B-AS1 Gene

Promoters and enhancers for RAB11B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I008388 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 12.4 -2.2 -2153 10.3 MLX IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF548 SP3 NFYC GLIS1 RAB11B HNRNPM ELAVL1 ZNF699 ZNF558 XAB2 ZNF317 ENSG00000269300 MAP2K7 MARCH2
GH19I008361 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.2 +27.3 27282 3.6 FOXA2 PKNOX1 ARNT ZFP64 ARID4B SIN3A YY1 FOS DEK ZC3H11A ANGPTL4 HNRNPM ZNF317 XAB2 ZNF699 ZNF558 MAP2K7 ELAVL1 ZNF559 ZNF414
GH19I008373 Enhancer 1.1 ENCODE dbSUPER 12.5 +16.4 16400 1.5 PKNOX1 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 TCF12 ZNF121 RAB11B-AS1 MARCH2 ANGPTL4 MIR4999
GH19I007700 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.5 +686.2 686203 7 HDGF PKNOX1 SMAD1 YBX1 IRF4 ZNF207 ZNF143 ATF7 RUNX3 RXRA FCER2 STXBP2 ELAVL1 HNRNPM XAB2 PEX11G MAP2K7 CD209 CLEC4G RPL21P129
GH19I008404 Enhancer 0.2 dbSUPER 4.8 -14.0 -14016 0.9 MARCH2 RAB11B-AS1 GC19P008401 RAB11B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RAB11B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RAB11B-AS1 Gene

Genomic Locations for RAB11B-AS1 Gene
chr19:8,374,373-8,390,691
(GRCh38/hg38)
Size:
16,319 bases
Orientation:
Minus strand
chr19:8,439,257-8,455,575
(GRCh37/hg19)

Genomic View for RAB11B-AS1 Gene

Genes around RAB11B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB11B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB11B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB11B-AS1 Gene

Proteins for RAB11B-AS1 Gene

Post-translational modifications for RAB11B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAB11B-AS1 Gene

Domains & Families for RAB11B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAB11B-AS1 Gene

Function for RAB11B-AS1 Gene

Phenotypes From GWAS Catalog for RAB11B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAB11B-AS1 Gene

Localization for RAB11B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAB11B-AS1 Gene

Pathways & Interactions for RAB11B-AS1 Gene

SuperPathways for RAB11B-AS1 Gene

No Data Available

Interacting Proteins for RAB11B-AS1 Gene

Gene Ontology (GO) - Biological Process for RAB11B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAB11B-AS1 Gene

Drugs & Compounds for RAB11B-AS1 Gene

No Compound Related Data Available

Transcripts for RAB11B-AS1 Gene

mRNA/cDNA for RAB11B-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RAB11B-AS1 Gene

RAB11B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAB11B-AS1 Gene

No ASD Table

Relevant External Links for RAB11B-AS1 Gene

GeneLoc Exon Structure for
RAB11B-AS1
ECgene alternative splicing isoforms for
RAB11B-AS1

Expression for RAB11B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAB11B-AS1 Gene

SOURCE GeneReport for Unigene cluster for RAB11B-AS1 Gene:

Hs.637720
genes like me logo Genes that share expression patterns with RAB11B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAB11B-AS1 Gene

Orthologs for RAB11B-AS1 Gene

Evolution for RAB11B-AS1 Gene

ENSEMBL:
Gene Tree for RAB11B-AS1 (if available)
TreeFam:
Gene Tree for RAB11B-AS1 (if available)

No data available for Orthologs for RAB11B-AS1 Gene

Paralogs for RAB11B-AS1 Gene

No data available for Paralogs for RAB11B-AS1 Gene

Variants for RAB11B-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAB11B-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000080334 -- 8,390,701(-) G/A upstream_transcript_variant
rs1000346951 -- 8,389,922(-) A/T intron_variant
rs1000428420 -- 8,385,980(-) C/T intron_variant
rs1000538676 -- 8,381,824(-) C/T intron_variant
rs1000591124 -- 8,381,545(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RAB11B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv6257n54 CNV gain 21841781
esv2675709 CNV deletion 23128226
esv28519 CNV loss 19812545
esv3643614 CNV gain 21293372
esv3643616 CNV gain 21293372

Additional Variant Information for RAB11B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB11B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAB11B-AS1 Gene

Disorders for RAB11B-AS1 Gene

Additional Disease Information for RAB11B-AS1

No disorders were found for RAB11B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB11B-AS1 Gene

Publications for RAB11B-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for RAB11B-AS1 Gene

Sources for RAB11B-AS1 Gene

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