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Aliases for RAB11B-AS1 Gene

Subcategory (RNA class) for RAB11B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAB11B-AS1 Gene

  • RAB11B Antisense RNA 1 2 3 5
  • RAB11B Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RAB11B-AS1 Gene

Previous GeneCards Identifiers for RAB11B-AS1 Gene

  • GC19M008441

Summaries for RAB11B-AS1 Gene

GeneCards Summary for RAB11B-AS1 Gene

RAB11B-AS1 (RAB11B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB11B-AS1 Gene

Genomics for RAB11B-AS1 Gene

Regulatory Elements for RAB11B-AS1 Gene

Enhancers for RAB11B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G008388 1.7 Ensembl ENCODE dbSUPER 12.4 -2.2 -2154 10.3 MLX CREB3L1 YY1 ZNF143 ZNF548 ZNF263 SP3 NFYC TBX21 GLIS1 HNRNPM ZNF699 ZNF558 ELAVL1 XAB2 MARCH2 ZNF177 ZNF559 RAB11B-AS1 LOC100128428
GH19G008361 1.6 FANTOM5 ENCODE dbSUPER 12.2 +27.4 27381 3.4 PKNOX1 ARNT AGO1 ZFP64 ARID4B SIN3A YY1 FOS DEK ZNF263 ZNF177 ZNF699 ELAVL1 RAB11B HNRNPM RAB11B-AS1 ANGPTL4 ZNF558 MARCH2 MIR4999
GH19G008373 1.3 ENCODE dbSUPER 12.5 +16.4 16401 1.5 FOXA2 PKNOX1 MLX ARID4B DMAP1 YY1 SP5 NFYC REST ZNF592 LOC100128428 ELAVL1 ZNF177 ZNF558 ZNF699 RAB11B-AS1 ENSG00000269300 ZNF559 HNRNPM MARCH2
GH19G007700 1.8 FANTOM5 Ensembl ENCODE dbSUPER 5.4 +686.2 686204 7.0 HDGF PKNOX1 YBX1 ELK1 ZNF143 ZNF207 JUNB TBX21 ZNF610 NBN STXBP2 FCER2 PEX11G CD209 CLEC4G RPL21P129 MCEMP1 MCOLN1 PNPLA6 RAB11B-AS1
GH19G008404 0.5 dbSUPER 4.8 -14.0 -14017 0.9 PAF1 POLR2A FOXP2 ZNF600 MARCH2 RAB11B-AS1 GC19P008401
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RAB11B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RAB11B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000106825 490 1600 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A ZNF2 ZBTB7B YY1 ZNF143

Genomic Location for RAB11B-AS1 Gene

Chromosome:
19
Start:
8,374,373 bp from pter
End:
8,390,691 bp from pter
Size:
16,319 bases
Orientation:
Minus strand

Genomic View for RAB11B-AS1 Gene

Genes around RAB11B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB11B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB11B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB11B-AS1 Gene

Proteins for RAB11B-AS1 Gene

Post-translational modifications for RAB11B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAB11B-AS1 Gene

Domains & Families for RAB11B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAB11B-AS1 Gene

Function for RAB11B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAB11B-AS1 Gene

Localization for RAB11B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAB11B-AS1 Gene

Pathways & Interactions for RAB11B-AS1 Gene

SuperPathways for RAB11B-AS1 Gene

No Data Available

Interacting Proteins for RAB11B-AS1 Gene

Gene Ontology (GO) - Biological Process for RAB11B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAB11B-AS1 Gene

Drugs & Compounds for RAB11B-AS1 Gene

No Compound Related Data Available

Transcripts for RAB11B-AS1 Gene

mRNA/cDNA for RAB11B-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RAB11B-AS1 Gene

RAB11B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAB11B-AS1 Gene

No ASD Table

Relevant External Links for RAB11B-AS1 Gene

GeneLoc Exon Structure for
RAB11B-AS1
ECgene alternative splicing isoforms for
RAB11B-AS1

Expression for RAB11B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAB11B-AS1 Gene

SOURCE GeneReport for Unigene cluster for RAB11B-AS1 Gene:

Hs.637720
genes like me logo Genes that share expression patterns with RAB11B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAB11B-AS1 Gene

Orthologs for RAB11B-AS1 Gene

Evolution for RAB11B-AS1 Gene

ENSEMBL:
Gene Tree for RAB11B-AS1 (if available)
TreeFam:
Gene Tree for RAB11B-AS1 (if available)

No data available for Orthologs for RAB11B-AS1 Gene

Paralogs for RAB11B-AS1 Gene

No data available for Paralogs for RAB11B-AS1 Gene

Variants for RAB11B-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAB11B-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000080334 -- 8,390,701(+) CCAGA(A/G)CCTAG intron-variant, upstream-variant-2KB
rs1000346951 -- 8,389,922(+) CCCGG(A/T)AATGG intron-variant, upstream-variant-2KB
rs1000428420 -- 8,385,980(+) TAGCA(C/T)GAGAT intron-variant
rs1000538676 -- 8,381,824(+) TCATG(C/T)TATTG intron-variant
rs1000591124 -- 8,381,545(+) CCTTC(A/G)TATTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RAB11B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv6257n54 CNV gain 21841781
esv2675709 CNV deletion 23128226
esv28519 CNV loss 19812545
esv3643614 CNV gain 21293372
esv3643616 CNV gain 21293372

Relevant External Links for RAB11B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB11B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAB11B-AS1 Gene

Disorders for RAB11B-AS1 Gene

Relevant External Links for RAB11B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAB11B-AS1

No disorders were found for RAB11B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB11B-AS1 Gene

Publications for RAB11B-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for RAB11B-AS1 Gene

Sources for RAB11B-AS1 Gene

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