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Aliases for RAB11B-AS1 Gene

Subcategory (RNA class) for RAB11B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAB11B-AS1 Gene

  • RAB11B Antisense RNA 1 2 3 5
  • RAB11B Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RAB11B-AS1 Gene

Previous GeneCards Identifiers for RAB11B-AS1 Gene

  • GC19M008441

Summaries for RAB11B-AS1 Gene

GeneCards Summary for RAB11B-AS1 Gene

RAB11B-AS1 (RAB11B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB11B-AS1 Gene

Genomics for RAB11B-AS1 Gene

Regulatory Elements for RAB11B-AS1 Gene

Enhancers for RAB11B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F008373 0.7 ENCODE 12.5 +16.4 16401 1.5 PKNOX1 MLX ARID4B DMAP1 ZNF48 YY1 ZNF121 SP5 NFYC REST ELAVL1 ZNF558 ZNF699 RAB11B-AS1 ENSG00000269300 ZNF559 HNRNPM MARCH2 LOC100128428 ZNF414
GH19F008388 1 Ensembl ENCODE 12.4 -2.2 -2154 10.3 HDGF PKNOX1 ARNT CREB3L1 MLX SIN3A ARID4B ZNF2 YY1 ZNF143 ZNF558 ZNF699 HNRNPM ELAVL1 XAB2 ZNF559 MARCH2 LINC01862 ENSG00000261866 LYPLA2P2
GH19F008361 0.9 FANTOM5 ENCODE 12.1 +27.4 27381 3.4 PKNOX1 ARNT ZFP64 ARID4B SIN3A ZNF48 YY1 ZNF121 FOS ZNF263 ZNF177 RAB11B RAB11B-AS1 ANGPTL4 MARCH2 MIR4999
GH19F007700 0.9 FANTOM5 ENCODE 5.4 +686.2 686204 7.0 HDGF PKNOX1 YBX1 ELK1 ZNF143 JUNB TBX21 ZNF610 NBN STAT3 STXBP2 FCER2 PEX11G CD209 CLEC4G RPL21P129 MCEMP1 MCOLN1 PNPLA6 RAB11B-AS1
GH19F008398 0.5 ENCODE 0.4 -7.7 -7695 0.1 GLIS1 ZNF600 GC19P008401 RAB11B-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RAB11B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RAB11B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000140360 491 2001 HDGF PKNOX1 ARNT CREB3L1 ARID4B ZNF2 YY1 ZNF143 ZNF207 ZNF548

Genomic Location for RAB11B-AS1 Gene

Chromosome:
19
Start:
8,374,373 bp from pter
End:
8,390,691 bp from pter
Size:
16,319 bases
Orientation:
Minus strand

Genomic View for RAB11B-AS1 Gene

Genes around RAB11B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB11B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB11B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB11B-AS1 Gene

Proteins for RAB11B-AS1 Gene

Post-translational modifications for RAB11B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAB11B-AS1 Gene

Domains & Families for RAB11B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAB11B-AS1 Gene

Function for RAB11B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAB11B-AS1 Gene

Localization for RAB11B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAB11B-AS1 Gene

Pathways & Interactions for RAB11B-AS1 Gene

SuperPathways for RAB11B-AS1 Gene

No Data Available

Interacting Proteins for RAB11B-AS1 Gene

Gene Ontology (GO) - Biological Process for RAB11B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAB11B-AS1 Gene

Transcripts for RAB11B-AS1 Gene

mRNA/cDNA for RAB11B-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RAB11B-AS1 Gene

RAB11B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAB11B-AS1 Gene

No ASD Table

Relevant External Links for RAB11B-AS1 Gene

GeneLoc Exon Structure for
RAB11B-AS1
ECgene alternative splicing isoforms for
RAB11B-AS1

Expression for RAB11B-AS1 Gene

mRNA expression in normal human tissues for RAB11B-AS1 Gene

SOURCE GeneReport for Unigene cluster for RAB11B-AS1 Gene:

Hs.637720
genes like me logo Genes that share expression patterns with RAB11B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RAB11B-AS1 Gene

Orthologs for RAB11B-AS1 Gene

Evolution for RAB11B-AS1 Gene

ENSEMBL:
Gene Tree for RAB11B-AS1 (if available)
TreeFam:
Gene Tree for RAB11B-AS1 (if available)

No data available for Orthologs for RAB11B-AS1 Gene

Paralogs for RAB11B-AS1 Gene

No data available for Paralogs for RAB11B-AS1 Gene

Variants for RAB11B-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAB11B-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10024 -- 8,374,061(-) CGCAT(G/T)CAGCC intron-variant, utr-variant-3-prime
rs10411435 -- 8,388,503(+) gcctc(A/G)atttc intron-variant, upstream-variant-2KB
rs10413136 -- 8,387,995(+) gcacc(C/T)gacct intron-variant
rs10415237 -- 8,376,934(+) cagac(A/G)cgcca intron-variant
rs10417076 -- 8,385,210(+) cctta(A/G)cccag intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RAB11B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv6257n54 CNV gain 21841781
esv2675709 CNV deletion 23128226
esv28519 CNV loss 19812545
esv3643614 CNV gain 21293372
esv3643616 CNV gain 21293372

Relevant External Links for RAB11B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB11B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAB11B-AS1 Gene

Disorders for RAB11B-AS1 Gene

Relevant External Links for RAB11B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAB11B-AS1

No disorders were found for RAB11B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB11B-AS1 Gene

Publications for RAB11B-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for RAB11B-AS1 Gene

Sources for RAB11B-AS1 Gene

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