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Aliases for R3HCC1 Gene

Aliases for R3HCC1 Gene

  • R3H Domain And Coiled-Coil Containing 1 2 3

External Ids for R3HCC1 Gene

Previous GeneCards Identifiers for R3HCC1 Gene

  • GC08P023202
  • GC08P021691
  • GC08P023127

Summaries for R3HCC1 Gene

GeneCards Summary for R3HCC1 Gene

R3HCC1 (R3H Domain And Coiled-Coil Containing 1) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is R3HCC1L.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for R3HCC1 Gene

Genomics for R3HCC1 Gene

Regulatory Elements for R3HCC1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for R3HCC1 Gene

23,270,120 bp from pter
23,296,279 bp from pter
26,160 bases
Plus strand

Genomic View for R3HCC1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for R3HCC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for R3HCC1 Gene

Proteins for R3HCC1 Gene

  • Protein details for R3HCC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    R3H and coiled-coil domain-containing protein 1
    Protein Accession:
    Secondary Accessions:
    • B7ZLI1

    Protein attributes for R3HCC1 Gene

    480 amino acids
    Molecular mass:
    53259 Da
    Quaternary structure:
    No Data Available
    • Sequence=CAB43396.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Cloning artifact and potential poly-A sequence.; Evidence={ECO:0000305};

    Alternative splice isoforms for R3HCC1 Gene


neXtProt entry for R3HCC1 Gene

Proteomics data for R3HCC1 Gene at MOPED

Post-translational modifications for R3HCC1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for R3HCC1 Gene

Domains & Families for R3HCC1 Gene

Protein Domains for R3HCC1 Gene

Suggested Antigen Peptide Sequences for R3HCC1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 R3H domain.
  • Contains 1 R3H domain.
genes like me logo Genes that share domains with R3HCC1: view

No data available for Gene Families for R3HCC1 Gene

Function for R3HCC1 Gene

Gene Ontology (GO) - Molecular Function for R3HCC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding IEA --
genes like me logo Genes that share ontologies with R3HCC1: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for R3HCC1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for R3HCC1 Gene

Localization for R3HCC1 Gene

Subcellular locations from

Jensen Localization Image for R3HCC1 Gene COMPARTMENTS Subcellular localization image for R3HCC1 gene
Compartment Confidence
cytosol 3
nucleus 3

Gene Ontology (GO) - Cellular Components for R3HCC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035145 exon-exon junction complex IBA --
genes like me logo Genes that share ontologies with R3HCC1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for R3HCC1 Gene

Pathways & Interactions for R3HCC1 Gene

SuperPathways for R3HCC1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for R3HCC1 Gene


No data available for Pathways by source and SIGNOR curated interactions for R3HCC1 Gene

Drugs & Compounds for R3HCC1 Gene

No Compound Related Data Available

Transcripts for R3HCC1 Gene

Unigene Clusters for R3HCC1 Gene

R3H domain and coiled-coil containing 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for R3HCC1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for R3HCC1 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10
SP1: - - -
SP2: - -
SP3: - - -
SP4: -

Relevant External Links for R3HCC1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for R3HCC1 Gene

mRNA expression in normal human tissues for R3HCC1 Gene

Protein differential expression in normal tissues from HIPED for R3HCC1 Gene

This gene is overexpressed in Retina (28.7), Fetal Brain (19.6), and Testis (6.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for R3HCC1 Gene

SOURCE GeneReport for Unigene cluster for R3HCC1 Gene Hs.458644

genes like me logo Genes that share expression patterns with R3HCC1: view

Protein tissue co-expression partners for R3HCC1 Gene

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for R3HCC1 Gene

Orthologs for R3HCC1 Gene

This gene was present in the common ancestor of animals.

Orthologs for R3HCC1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia R3HCC1 35
  • 80.13 (n)
  • 76 (a)
R3HCC1 36
  • 34 (a)
(Canis familiaris)
Mammalia R3HCC1 35
  • 81.59 (n)
  • 75.4 (a)
R3HCC1 36
  • 40 (a)
(Pan troglodytes)
Mammalia R3HCC1 35
  • 98.55 (n)
  • 98.02 (a)
R3HCC1 36
  • 98 (a)
(Mus musculus)
Mammalia R3hcc1 16
R3hcc1 36
  • 48 (a)
(Monodelphis domestica)
Mammalia R3HCC1 36
  • 32 (a)
(Ornithorhynchus anatinus)
Mammalia R3HCC1 36
  • 31 (a)
(Gallus gallus)
Aves R3HCC1 36
  • 23 (a)
(Anolis carolinensis)
Reptilia R3HCC1 36
  • 21 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.19348 35
(Danio rerio)
Actinopterygii r3hcc1 36
  • 15 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG2162 36
  • 11 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 18 (a)
Species with no ortholog for R3HCC1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for R3HCC1 Gene

Gene Tree for R3HCC1 (if available)
Gene Tree for R3HCC1 (if available)

Paralogs for R3HCC1 Gene

Paralogs for R3HCC1 Gene

(2) SIMAP similar genes for R3HCC1 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with R3HCC1: view

Variants for R3HCC1 Gene

Sequence variations from dbSNP and Humsavar for R3HCC1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs13530 - 23,293,365(-) AGGCC(A/C/T)GGCAG missense, reference, nc-transcript-variant
rs15946 -- 23,294,821(+) CTCAC(A/C/G)CAGGG reference, synonymous-codon, nc-transcript-variant
rs883886 -- 23,294,238(+) TGGCC(A/G)TGGCG intron-variant
rs1002791 -- 23,295,747(-) CCTCT(A/C)CATGC intron-variant
rs1002792 -- 23,295,509(-) TAGTT(A/G)CTACT intron-variant

Variation tolerance for R3HCC1 Gene

Gene Damage Index Score: 6.59; 78.08% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for R3HCC1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for R3HCC1 Gene

Disorders for R3HCC1 Gene

Relevant External Links for R3HCC1

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with R3HCC1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for R3HCC1 Gene

Publications for R3HCC1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 67
  2. Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution. (PMID: 22927429) Lee S. … Qian S.B. (Proc. Natl. Acad. Sci. U.S.A. 2012) 67
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 67
  4. Initial characterization of the human central proteome. (PMID: 21269460) Burkard T.R. … Colinge J. (BMC Syst. Biol. 2011) 67
  5. Efficacy of metformin therapy in adolescent girls with androgen excess: relation to sex hormone-binding globulin and androgen receptor polymorphisms. (PMID: 20691435) DA-az M. … IbA!A+ez L. (Fertil. Steril. 2010) 67

Products for R3HCC1 Gene

Sources for R3HCC1 Gene

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