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Aliases for R3HCC1 Gene

Aliases for R3HCC1 Gene

  • R3H Domain And Coiled-Coil Containing 1 2 3 5

External Ids for R3HCC1 Gene

Previous GeneCards Identifiers for R3HCC1 Gene

  • GC08P023202
  • GC08P021691
  • GC08P023127

Summaries for R3HCC1 Gene

GeneCards Summary for R3HCC1 Gene

R3HCC1 (R3H Domain And Coiled-Coil Containing 1) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is R3HCC1L.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for R3HCC1 Gene

Genomics for R3HCC1 Gene

Regulatory Elements for R3HCC1 Gene

Enhancers for R3HCC1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F023295 0.9 Ensembl ENCODE 24.5 +27.7 27726 4.2 CTCF ZNF146 JUN SIN3A MAX RAD21 RFX5 ZNF316 POLR2A SMC3 R3HCC1 CHMP7 LOXL2 LOC100507156 GC08P023294
GH08F023301 0.9 Ensembl ENCODE 20.7 +34.7 34733 5.7 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF207 R3HCC1 CHMP7 ENSG00000253200 BIN3 LOC100507156 TNFRSF10A LOC389641 ENTPD4 LOC107986927 C8orf58
GH08F023293 0.5 ENCODE 17.1 +23.5 23483 0.2 ZNF133 PRDM1 R3HCC1 CHMP7 GC08P023294
GH08F023275 0.7 ENCODE 13.2 +6.1 6129 0.7 HDAC1 PKNOX1 SCRT2 FOS KLF13 EGR2 ZBTB2 ZEB2 SMARCA4 PBX2 R3HCC1 LOXL2 GC08P023294
GH08F023300 0.2 ENCODE 12.6 +30.8 30843 1.2 ZNF316 ZFHX2 BHLHE40 EGR2 R3HCC1 CHMP7 LOC100507156 LOC389641 TNFRSF10A LOXL2 GC08P023294
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around R3HCC1 on UCSC Golden Path with GeneCards custom track

Genomic Location for R3HCC1 Gene

Chromosome:
8
Start:
23,270,120 bp from pter
End:
23,296,279 bp from pter
Size:
26,160 bases
Orientation:
Plus strand

Genomic View for R3HCC1 Gene

Genes around R3HCC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
R3HCC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for R3HCC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for R3HCC1 Gene

Proteins for R3HCC1 Gene

  • Protein details for R3HCC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y3T6-R3HC1_HUMAN
    Recommended name:
    R3H and coiled-coil domain-containing protein 1
    Protein Accession:
    Q9Y3T6
    Secondary Accessions:
    • B7ZLI1

    Protein attributes for R3HCC1 Gene

    Size:
    440 amino acids
    Molecular mass:
    49092 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAI43823.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAI43830.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAB43396.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAB43396.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Cloning artifact and potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=EAW63629.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=EAW63630.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for R3HCC1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for R3HCC1 Gene

Post-translational modifications for R3HCC1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for R3HCC1 Gene

Domains & Families for R3HCC1 Gene

Protein Domains for R3HCC1 Gene

Suggested Antigen Peptide Sequences for R3HCC1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y3T6

UniProtKB/Swiss-Prot:

R3HC1_HUMAN :
  • Contains 1 R3H domain.
Domain:
  • Contains 1 R3H domain.
genes like me logo Genes that share domains with R3HCC1: view

No data available for Gene Families for R3HCC1 Gene

Function for R3HCC1 Gene

Gene Ontology (GO) - Molecular Function for R3HCC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding IEA --
genes like me logo Genes that share ontologies with R3HCC1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for R3HCC1 Gene

Localization for R3HCC1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for R3HCC1 Gene COMPARTMENTS Subcellular localization image for R3HCC1 gene
Compartment Confidence
nucleus 5
cytosol 3

Gene Ontology (GO) - Cellular Components for R3HCC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035145 exon-exon junction complex IBA --
genes like me logo Genes that share ontologies with R3HCC1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for R3HCC1 Gene

Pathways & Interactions for R3HCC1 Gene

SuperPathways for R3HCC1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for R3HCC1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for R3HCC1 Gene

Transcripts for R3HCC1 Gene

Unigene Clusters for R3HCC1 Gene

R3H domain and coiled-coil containing 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for R3HCC1 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10
SP1: - - -
SP2: - -
SP3: - - -
SP4: -
SP5:
SP6:

Relevant External Links for R3HCC1 Gene

GeneLoc Exon Structure for
R3HCC1
ECgene alternative splicing isoforms for
R3HCC1

Expression for R3HCC1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for R3HCC1 Gene

Protein differential expression in normal tissues from HIPED for R3HCC1 Gene

This gene is overexpressed in Retina (28.7), Fetal Brain (19.6), and Testis (6.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for R3HCC1 Gene



Protein tissue co-expression partners for R3HCC1 Gene

NURSA nuclear receptor signaling pathways regulating expression of R3HCC1 Gene:

R3HCC1

SOURCE GeneReport for Unigene cluster for R3HCC1 Gene:

Hs.458644
genes like me logo Genes that share expression patterns with R3HCC1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for R3HCC1 Gene

Orthologs for R3HCC1 Gene

This gene was present in the common ancestor of animals.

Orthologs for R3HCC1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia R3HCC1 34 35
  • 98.55 (n)
dog
(Canis familiaris)
Mammalia R3HCC1 34 35
  • 81.59 (n)
cow
(Bos Taurus)
Mammalia R3HCC1 34 35
  • 80.13 (n)
mouse
(Mus musculus)
Mammalia R3hcc1 35
  • 48 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia R3HCC1 35
  • 32 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia R3HCC1 35
  • 31 (a)
OneToOne
chicken
(Gallus gallus)
Aves R3HCC1 35
  • 23 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia R3HCC1 35
  • 21 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.19348 34
zebrafish
(Danio rerio)
Actinopterygii r3hcc1 35
  • 15 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG2162 35
  • 11 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 18 (a)
OneToMany
Species where no ortholog for R3HCC1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for R3HCC1 Gene

ENSEMBL:
Gene Tree for R3HCC1 (if available)
TreeFam:
Gene Tree for R3HCC1 (if available)

Paralogs for R3HCC1 Gene

Paralogs for R3HCC1 Gene

(2) SIMAP similar genes for R3HCC1 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with R3HCC1: view

Variants for R3HCC1 Gene

Sequence variations from dbSNP and Humsavar for R3HCC1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1002791 -- 23,295,747(-) CCTCT(A/C)CATGC intron-variant
rs1002792 -- 23,295,509(-) TAGTT(A/G)CTACT intron-variant
rs10096613 -- 23,295,198(+) AAACC(A/G)TATCC intron-variant
rs10101089 -- 23,293,122(+) AAGCC(A/G)ACCAT intron-variant
rs111243078 -- 23,287,235(+) TTCCG(G/T)ATTCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for R3HCC1 Gene

Variant ID Type Subtype PubMed ID
dgv7139n100 CNV loss 25217958
nsv1017570 CNV gain 25217958

Variation tolerance for R3HCC1 Gene

Gene Damage Index Score: 6.59; 78.08% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for R3HCC1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
R3HCC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for R3HCC1 Gene

Disorders for R3HCC1 Gene

Relevant External Links for R3HCC1

Genetic Association Database (GAD)
R3HCC1
Human Genome Epidemiology (HuGE) Navigator
R3HCC1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
R3HCC1

No disorders were found for R3HCC1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for R3HCC1 Gene

Publications for R3HCC1 Gene

  1. Efficacy of metformin therapy in adolescent girls with androgen excess: relation to sex hormone-binding globulin and androgen receptor polymorphisms. (PMID: 20691435) DA-az M. … IbA!A+ez L. (Fertil. Steril. 2010) 3 46 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  4. Toward a comprehensive characterization of a human cancer cell phosphoproteome. (PMID: 23186163) Zhou H. … Mohammed S. (J. Proteome Res. 2013) 4 64
  5. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64

Products for R3HCC1 Gene

Sources for R3HCC1 Gene

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