PYGO2 Gene
protein-coding GIFtS: 53
GCID: GC01M154929
|
|
pygopus homolog 2 (Drosophila)
| |
Aliases
for PYGO2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Pygopus Homolog 2 (Drosophila)1 2 | | 1190004M21Rik2 | | Pygopus 22 | | Pygopus Homolog 22 |
Export aliases for PYGO2 gene to outside databasesPrevious GC identifers: GC01P148193 GC01M150660 GC01M151704 GC01M152146 GC01M151742 GC01M153196 GC01M126291 |
Summaries
for PYGO2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: PYGO2_HUMAN, Q9BRQ0Function: Involved in signal transduction through the Wnt pathway
Gene Wiki entry for PYGO2
|
Genomic Views
for PYGO2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000001.10 NC_018912.1 NT_004487.19
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the PYGO2 gene promoter:
c-Rel p53 AP-1 HOXA5 STAT3 c-Myb AP-4 E47
Other transcription factors
Search SABiosciences Chromatin IP Primers for PYGO2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PYGO2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 1q21.3 Ensembl cytogenetic band: 1q21.3 HGNC cytogenetic band: 1q22PYGO2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M154929: view genomic region
(about GC identifiers)
Start:
|
154,929,502 bp from pter |
End:
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154,936,329 bp from pter |
Size:
|
6,828 bases |
Orientation:
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minus strand |
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Proteins
for PYGO2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: PYGO2_HUMAN, Q9BRQ0 (See
protein sequence)Recommended Name: Pygopus homolog 2 Size: 406 amino acids; 41244 Da
Subunit: Binds to BCL9 via the PHD-type zinc finger motif, and thereby becomes part of the nuclear beta-catenin/TCFcomplex
Subcellular location: Nucleus (Probable)
Sequence caution: Sequence=AAL55782.1; Type=Miscellaneous discrepancy; Note=Sequencing errors;
1 PDB 3D structure from  and Proteopedia  for PYGO2:2XB1 (3D)
Secondary accessions: Q8WYZ4 Q96CY2Explore the universe of human proteins at neXtProt for PYGO2: NX_Q9BRQ0
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9BRQ0
PYGO2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_612157.1
ENSEMBL proteins: ENSP00000357442 ENSP00000357441
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005634 | nucleus |
IEA | -- |
PYGO2 for ontologies About GeneDecksing
PYGO2 Antibody Products:
Assay Products for PYGO2: |
Protein
Domains /
Families
for PYGO2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
PYGO2 for domains About GeneDecksing
5 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q9BRQ0ProtoNet protein and cluster: Q9BRQ0 1 Blocks protein family: IPB001965 Zn-finger-like
UniProtKB/Swiss-Prot: PYGO2_HUMAN, Q9BRQ0Similarity: Contains 1 PHD-type zinc finger |
Function
for PYGO2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: PYGO2_HUMAN, Q9BRQ0Function: Involved in signal transduction through the Wnt pathway
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for PYGO2 (see all 5)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for PYGO2
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
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Synthesis Service for PYGO2 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat PYGO2 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PYGO2 |
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table
PYGO2 for ontologies About GeneDecksing
Animal Models:
Mouse knock-outs for PYGO2: Pygo2tm1.2Xdai Pygo2tm1.2Ssp
13 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Pygo2):
PYGO2 for phenotypes About GeneDecksing
|
Pathways & Interactions
for PYGO2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | WNT Signaling | | | 2 | Wnt Signaling Pathway | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1  R&D Systems Pathway for PYGO2
1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for PYGO2
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for PYGO2
STRING Interaction
Network Preview (showing 5 interactants - click image to see 12)
5/13 Interacting proteins for PYGO2 (Q9BRQ02, 3 ENSP000003574424) via UniProtKB, MINT, STRING, and/or I2D (see all 13)About this table
Gene Ontology (GO): 5/12 biological process terms (GO ID links to tree view) (see all 12): About this table
PYGO2 for ontologies About GeneDecksing
|
Drugs & Compounds
for PYGO2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for PYGO2
Search CenterWatch for drugs/clinical trials and news about PYGO2
|
Transcripts
for PYGO2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for PYGO2 gene: NM_138300.3 Unigene Cluster for PYGO2: Pygopus homolog 2 (Drosophila) Hs.533597 [show with all ESTs]Unigene Representative Sequence: NM_1383003 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000368457(uc001fft.3) ENST00000368456 ENST00000483463
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for PYGO2 (see all 5)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for PYGO2
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: PYGO2 (NM_138300) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PYGO2 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat PYGO2 |
Additional cDNA sequence: AB593176.1 AF289598.1 AF457208.1 AK090545.1 AK092389.1 AK095425.1 BC006132.1 BC013725.1 BC032099.2 12 DOTS entries: DT.91923797 DT.100060602 DT.121414075 DT.100781389 DT.100781387 DT.100645147 DT.100736708 DT.100781386 DT.100781388 DT.100846065 DT.121413969 DT.91750144 24/662 AceView cDNA sequences (see all 662): BQ962736 BQ673064 BE887474 BM554828 BU627443 BQ218463 BC011813 BM824040 CR624320 AI582572 BC032099 CN482990 AX746503 BU541173 AI813965 T50498 BQ953225 BQ962516 BF054991 BQ939807 BM005716 BQ651168 AW168209 BC006132
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for PYGO2 About this scheme
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3a | · | 3b |
|---|
|
| SP1: | | | | | - | | | | | | | | |
| SP2: | | | | | | | | | | | | |
ECgene alternative splicing isoforms for PYGO2
|
Expression
for PYGO2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| PYGO2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AGGAGAGAAG
About this image
See PYGO2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for PYGO2
SOURCE GeneReport for Unigene cluster: Hs.533597
SABiosciences Expression via Pathway-Focused PCR Arrays including PYGO2:
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for PYGO2
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat PYGO2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat PYGO2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat PYGO2 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PYGO2 |
Orthologs
for PYGO2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for PYGO2 gene from 4/15 species (see all 15) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
lizard
(Anolis carolinensis) |
Reptilia |
PYGO26 |
-- |
73(a) |
1 ↔ 1 |
GL344009.1(9426-16274) |
African clawed frog
(Xenopus laevis) |
Amphibia |
AF521655.12 |
-- |
77.31(n) |
|
AF521655.1 |
zebrafish
(Danio rerio) |
Actinopterygii |
wufc56f022 |
wufc56f02 |
74.23(n) |
|
325150 AI878033.1 |
honey bee
(Apis mellifera) |
Insecta |
-- |
-- |
20(a) |
1 → many |
Group2.2(33801-35546) |
ENSEMBL Gene Tree for PYGO2 (if available)
TreeFam Gene Tree for PYGO2 (if available) |
Paralogs
for PYGO2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for PYGO2 gene
- PYGO12
1 SIMAP similar gene for PYGO2 using alignment to 3 protein entries: PYGO2_HUMAN (see all proteins):PYGO1
PYGO2 for paralogs About GeneDecksing
|
Genomic Variants
for PYGO2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 1 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for PYGO2 (154929502 - 154936329 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for PYGO2: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing PYGO2 |
|
Disorders
/ Diseases
for PYGO2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
PYGO2 for disorders About GeneDecksing
OMIM gene information: 606903
OMIM disorders: --
5  diseases for PYGO2: About MalaCardstreacher collins syndrome crouzon syndrome epithelial ovarian cancer ovarian cancer
breast cancer
1 disease from the University of Copenhagen DISEASES database for PYGO2:Treacher Collins syndrome Export disorders for PYGO2 gene to outside databases
|
Publications
for PYGO2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for PYGO2 gene, integrated from 9 sources (see all 26):
(articles sorted by number of sources associating them with PYGO2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Large-scale cDNA transfection screening for genes related to cancer development and progression. (PubMed id 15498874)1, 2 Wan D....Gu J. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Wnt/wingless signaling requires BCL9/legless-mediated recruitment of pygopus to the nuclear beta-catenin-TCF complex. (PubMed id 11955446)1, 2 Kramps T.... Basler K. (2002)
- A new nuclear component of the Wnt signalling pathway. (PubMed id 11988739)1, 3 Thompson B....Bienz M. (2002)
- A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
- A protein array screen for Kaposi's sarcoma-associated herpesvirus LANA interactors links LANA to TIP60, PP2A activity, and telomere s hortening. (PubMed id 22379092)1 Shamay M....Hayward S.D. (2012)
- Pygo2 regulates histone gene expression and H3 K56 ace tylation in human mammary epithelial cells. (PubMed id 22186018)1 Gu B....Dai X. (2012)
- The role of Pygopus 2 in rat glioma cell growth. (PubMed id 20361361)1 Chen Y.Y....Wang Z.X. (2011)
- System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (2011)
- Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (2010)
|
External Searches for PYGO2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing PYGO2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing PYGO2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing PYGO2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for PYGO2 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for PYGO2 gene:
Search GeneIP for patents involving PYGO2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for PYGO2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | OriGene Antibodies for PYGO2 | | OriGene shRNA RFP for PYGO2 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for PYGO2 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for PYGO2 | | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for PYGO2 | | OriGene 3'-UTR Clone for PYGO2 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for PYGO2 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for PYGO2 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for PYGO2 | | OriGene Custom Protein Services for PYGO2 | | | OriGene Custom Immunoassay Development | | |
| |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat PYGO2 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing PYGO2 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PYGO2 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat PYGO2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat PYGO2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat PYGO2 |
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| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat PYGO2 |
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