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PYGB Gene

protein-coding   GIFtS: 60

GC20P025176
phosphorylase, glycogen; brain
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
EC 2.4.1.1 3
MGC9213 2
OTTHUMP00000030488 2
Descriptions
brain glycogen phosphorylase 2
glycogen phosphorylase B 2
phosphorylase, glycogen; brain 2
External Ids
HGNC: 97231
Entrez Gene: 58342
UniProtKB: P112163
Ensembl: ENSG000001009947
Search outside databases for aliases for PYGB gene

Previous GC identifers: GC20P025216 GC20P025223

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for PYGB:
The protein encoded by this gene is a glycogen phosphorylase found predominantly in the brain. The
encoded protein forms homodimers which can associate into homotetramers, the enzymatically active
form of glycogen phosphorylase. The activity of this enzyme is positively regulated by AMP and
negatively regulated by ATP, ADP, and glucose-6-phosphate. This enzyme catalyzes the
rate-determining step in glycogen degradation. [provided by RefSeq]

UniProtKB/Swiss-Prot: PYGB_HUMAN, P11216
Function: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from
different sources differ in their regulatory mechanisms and in their natural substrates. However,
all known phosphorylases share catalytic and structural properties

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the PYGB gene  

Entrez Gene cytogenetic band: 20p11.2-p11.1   Ensembl cytogenetic band:  20p11.21   HGNC chromosome: 20

PYGB Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 20         GeneLoc Exon Structure

GeneLoc location for GC20P025176:     (about GC identifiers)

Start:
25,176,706 bp from pter
End:
25,226,648 bp from pter
Size:
49,943 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000020.9  NT_011387.8  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: PYGB_HUMAN, P11216 (See protein sequence)
Recommended Name: Glycogen phosphorylase, brain form  
Size: 843 amino acids; 96696 Da
Cofactor: Pyridoxal phosphate
Subunit: Homodimer. Dimers associate into a tetramer to form the enzymatically active phosphorylase
A
Secondary accessions: Q96AK1 Q9NPX8

Post-translational modifications:

  • Phosphorylation of Ser-15 converts phosphorylase B (unphosphorylated) to phosphorylase A1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_002853.2  

    ENSEMBL proteins: 
    ENSP00000216962 ENSP00000365780 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
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    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (GPBB)
    Human Recombinant Proteins from Abnova (PYGB)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    1 Gene Ontology (GO) cellular component term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737 cytoplasm IDA10638593
    About this table

    Antibodies for PYGB: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse Antibodies at Sigma-Aldrich
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (GPBB), each with their AbpromiseSM
    Browse Abnova for Monoclonal and Polyclonal Antibodies
    Novus Biologicals Antibodies for PYGB

    Assays for PYGB: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    2 InterPro domains/families:
     IPR011833 Glycg_phsphrylas
     IPR000811 Glyco_trans_35


       GeneDecks  PYGB for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry P11216

    ProtoNet protein and cluster: P11216

    1 Blocks protein family: IPB000811 Glycosyl transferase

    UniProtKB/Swiss-Prot: PYGB_HUMAN, P11216
    Similarity: Belongs to the glycogen phosphorylase family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (PYGB)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002862

                  Applied Biosystems Silencer® siRNAs for PYGB

                  Sigma-Aldrich siRNA and siRNA Panels for PYGB  
                         Sigma-Aldrich shRNA for PYGB  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for PYGB
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_002862
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_002862
                                     untagged cDNA clone in CMV expression vector: NM_002862 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_002862

    UniProtKB/Swiss-Prot: PYGB_HUMAN, P11216
    Function: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from
    different sources differ in their regulatory mechanisms and in their natural substrates. However,
    all known phosphorylases share catalytic and structural properties
    Catalytic activity: (1,4-alpha-D-glucosyl)(n) + phosphate = (1,4-alpha-D-glucosyl)(n-1) +
    alpha-D-glucose 1-phosphate
    Enzyme regulation: Activity of phosphorylase is controlled both by allosteric means (through the
    non-covalent binding of metabolites) and by covalent modification. Thus AMP allosterically
    activates, whereas ATP, ADP, and glucose-6-phosphate allosterically inhibit, phosphorylase B
    Enzyme Number (IUBMB): EC 2.4.1.1 

    Genatlas biochemistry entry for PYGB:
    phosphorylase,glycogen catabolism,brain

    3 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008184 glycogen phosphorylase activity NAS3346228
    GO:0016757 transferase activity, transferring glycosyl groups IEA--
    GO:0030170 pyridoxal phosphate binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    1 Invitrogen iPath™ Online BioAtlas - Pathway for PYGB (Maps provided by GeneGo):
     Galactose metabolism

       GeneDecks  PYGB for the pathways selected above  
    About GeneDecksing

    2 Millipore Pathways for PYGB
     Glycogen metabolism
     Galactose metabolism

       GeneDecks  PYGB for the pathways selected above  
    About GeneDecksing

    2 Sigma-Aldrich "Your Favorite Gene" Pathways for  PYGB  (Your Favorite Gene powered by Ingenuity) 
     Starch and Sucrose Metabolism
     &alpha

       GeneDecks  PYGB for the pathways selected above  
    About GeneDecksing

    2 Kegg Pathways  (Kegg details for PYGB):
     hsa00500 Starch and sucrose metabolism
     hsa04910 Insulin signaling pathway

       GeneDecks  PYGB for the pathways selected above  
    About GeneDecksing

    5/30 Interacting proteins for PYGB (ENSP000002169623) via UniProtKB, MINT, and/or STRING (see all 30 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PHKA2ENSP000003692743STRING (score=.956)
    UGP2ENSP000003387033STRING (score=.954)
    AGLENSP000003090203STRING (score=.953)
    GBE1ENSP000002643263STRING (score=.943)
    GYS1ENSP000003179043STRING (score=.938)
    About this table

    2 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005975 carbohydrate metabolic process IEA--
    GO:0005980 glycogen catabolic process NAS3346228
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Sigma-Aldrich Small Molecules for PYGB:
    Inhibitor

    Browse Tocris compounds for PYGB
    10/13 Novoseek chemical compound relationships for PYGB gene (see all 13 )
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    1-glcnac 94.32 2 16616506 (1)
    heptulose-2-p 92.48 1 7987213 (1)
    glycogen 88.05 101 7744850 (5), 1459992 (4), 9583890 (3), 9792273 (2) (see all 69)
    galactose-1-phosphate 78.39 3 15299833 (1), 8948464 (1), 7987213 (1)
    pyranose 59.00 1 9568898 (1)
    thermolysin 58.66 3 11784144 (1), 15481990 (1), 12213058 (1)
    hydrogen 40.46 1 9711498 (1)
    glucose 33.60 7 15299833 (1), 11886794 (1), 8057302 (1), 8180201 (1) (see all 6)
    glucose 6-phosphate 32.71 1 8331662 (1)
    adp 17.17 1 8250871 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (PYGB)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002862

                  Sigma-Aldrich siRNA and siRNA Panels for PYGB  
                         Sigma-Aldrich shRNA for PYGB  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_002862  

    REFSEQ mRNAs for PYGB gene: 

    NM_002862.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_002862  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_002862
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_002862
                                     untagged cDNA clone in CMV expression vector: NM_002862 

    Additional cDNA sequence: 

    AB209080.1 AF432222.1 AK299697.1 AK309036.1 BC017045.2 BC030795.2 BC113105.1 BC113106.1 
    CR609882.1 J03544.1 U47025.1 Z36853.1 

    24/28 DOTS entries (see all 28 ):

    DT.100815386  DT.450117  DT.100815395  DT.100747245  DT.100815382  DT.120832388  DT.120832288  DT.100810220 
    DT.100815393  DT.91744532  DT.120832377  DT.450116  DT.91763628  DT.100815389  DT.91936184  DT.92345604 
    DT.100697009  DT.100699697  DT.100747248  DT.100815397  DT.120832340  DT.91922003  DT.95105546  DT.95278098 

    24/555 AceView cDNA sequences (see all 555 ):

    BG033441 BM980763 BC017045 AF432222 BQ084148 CD518408 NM_002862 BQ433140 
    AI868699 BQ955038 H72006 H40900 BM700321 CD743231 CA416506 BQ955182 
    BU182767 BQ876761 BQ958442 BM784716 BU156170 BC030795 BE869606 AI420362 

    highest scoring ESTs for PYGB:

    U47025 AA209502 AA209516 AA300643 AA306840 AA315841 AA326607 AA336995 AA349658 AA418137 

    Unigene Cluster for PYGB:

    Phosphorylase, glycogen; brain
    Hs.368157  [show with all ESTs]
    Unigene Representative Sequence: BC017045


    GeneLoc Exon Structure

    2 Ensembl transcripts including schematic representations:
    ENST00000216962  ENST00000376595  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    PYGB expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for PYGB

    1 / 2 / 3

    4 probe-sets matching PYGB gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    36667_at2, 3 U95-A 1 0.94 1.00 0.99 1.00 U47025 1.00 1.00 1.00 1

    59669_at2, 3 U95-C 1 0.81 1.00 0.99 1.00 AI924969 0.40 1.00 0.76 1

    201481_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_002862 0.60 1.00 0.82 1

    201481_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: CTGGATCTGG

    SOURCE GeneReport for Unigene cluster: Hs.368157

    Expression variation in blood from EXPOLDB for PYGB

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for PYGB gene from 5/19 species (see all 19 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    PYGB1   -- phosphorylase, glycogen; brain 89.86(n)
    94.81(a)
    477003  XM_534201.2  XP_534201.2 
    chimpanzee
    (Pan troglodytes)
    PYGB1   -- phosphorylase, glycogen; brain 99.37(n)
    100(a)
    469908  XM_525293.2  XP_525293.2 
    cow
    (Bos taurus)
    PYGB1   -- phosphorylase, glycogen; brain 89.68(n)
    93.59(a)
    505560  NM_001035270.1  NP_001030347.1 
    rat
    (Rattus norvegicus)
    Pygb1   -- phosphorylase, glycogen; brain 88.53(n)
    95.37(a)
    25739  XM_342542.3  XP_342543.1 
    mouse
    (Mus musculus)
    Pygb1, 5 2 (84.00 cM)5
    brain glycogen phosphorylase1, 5 88.61(n)1
    95.61(a)1
    1100781  NM_153781.11  NP_722476.11 
     AI8467395  AK0287445  (see all 30)
    About this table        Species with no ortholog for PYGB

    ENSEMBL Gene Tree for PYGB
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for PYGB gene
    PYGL2  PYGM2  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/427 NCBI SNPs in PYGB are shown (see all 427 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 106)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 20 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs22278911,2
    A,C,F,H25210769(+) TGGCCG/AATACC 1 N/D mis1 ese310Minor allele frequency- A:0.29MN EA NA EU WA 2164
    rs22289761,2
    C,F,H25207006(+) TGGCCG/TCCACG 1 A/S mis1 ese313Minor allele frequency- T:0.22MN NA EU EA WA 1092
    rs61151251,2
    H25208954(+) GCTGCC/TTGAGG 1 P/L mis1 ese34Minor allele frequency- T:0.00EU EA WA 418
    --
    rs61328221,2
    A25176695(+) TCCCGC/TCCGCA 1 -- ng510--------
    rs60370771,2
    H25203283(+) GCGGCC/TTGAGT 1 P/L mis1 ese34Minor allele frequency- T:0.00EU EA WA 420
    rs60504831,2
    H25175084(+) ctcacC/Tttctc 1 -- ng514Minor allele frequency- T:0.00EU EA WA 402
    rs22278921,2
    A,C,F,H25212814(+) TTCGAC/TGTGCA 1 D/D syn1 ese39Minor allele frequency- T:0.37MN EU EA WA NA 694
    rs22278901,2
    A,C,F,H25208931(+) TGTGCG/ATACAC 1 A/A syn1 ese39Minor allele frequency- A:0.39MN EU EA WA NA 668
    rs22289771,2
    C,F,H25211895(+) AGGGAC/TGTGGC 1 D/D syn1 ese36Minor allele frequency- T:0.02MN NA EU EA WA 536
    --
    rs22278941,2
    F25203338(+) GACGGC/TGTGAA 1 G/G syn18Minor allele frequency- T:0.12MN EU EA WA NA 604
    About this table

    HapMap Linkage Disequilibrium images for PYGB (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 138550

    4 Novoseek disease relationships for PYGB gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    gastric carcinoma 30.56 1 10638593 (1)
    cancer 5.32 1 9583890 (1)
    myocardial infarction 0.00 1 8096924 (1)
    carcinoma 0.00 2 9792273 (1), 9583890 (1)
    About this table

    Human Genome Epidemiology Navigator: PYGB (2 documents)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/81 PubMed articles for PYGB gene (see all 81 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 5834 HGNC: 9723 AceView: PYGB Ensembl:ENSG00000100994 euGenes: HUgn5834
    ECgene: PYGB H-InvDB: PYGB
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for PYGB:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



      Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
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     Predesigned and custom siRNAs for PYGB Browse antibodies at Sigma-Aldrich
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for PYGB Small molecules for PYGB
     "Your Favorite Gene" Pathwaysfeedback


      
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     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Antibodies for PYGB

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