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Aliases for PYCARD-AS1 Gene

Subcategory (RNA class) for PYCARD-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PYCARD-AS1 Gene

  • PYCARD Antisense RNA 1 2 3 4 5
  • PYCARD Opposite Strand 2 3
  • C16orf98 3 4
  • PYCARDOS 3 4
  • Chromosome 16 Open Reading Frame 98 2
  • PYCARD Antisense Gene Protein 1 4
  • PYCARD Opposite Strand Protein 4

External Ids for PYCARD-AS1 Gene

Previous HGNC Symbols for PYCARD-AS1 Gene

  • C16orf98
  • PYCARDOS

Previous GeneCards Identifiers for PYCARD-AS1 Gene

  • GC16P031202

Summaries for PYCARD-AS1 Gene

GeneCards Summary for PYCARD-AS1 Gene

PYCARD-AS1 (PYCARD Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PYCARD-AS1 Gene

Genomics for PYCARD-AS1 Gene

Regulatory Elements for PYCARD-AS1 Gene

Enhancers for PYCARD-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G031199 1 ENCODE 0.7 -0.2 -218 3.8 HDGF PKNOX1 SIN3A ZNF2 TCF12 GLIS2 KDM4B ZNF263 REST ZNF592 PYCARD PYCARD-AS1 ENSG00000260060
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PYCARD-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for PYCARD-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000085316 615 1401 HDGF HDAC1 SIN3A ZNF2 GLIS2 EGR1 ETV6 IKZF2 KDM4B EGR2

Genomic Location for PYCARD-AS1 Gene

Chromosome:
16
Start:
31,201,885 bp from pter
End:
31,203,452 bp from pter
Size:
1,568 bases
Orientation:
Plus strand

Genomic View for PYCARD-AS1 Gene

Genes around PYCARD-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PYCARD-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PYCARD-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PYCARD-AS1 Gene

Proteins for PYCARD-AS1 Gene

  • Protein details for PYCARD-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    I3L0S3-PYAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein PYCARD-AS1
    Protein Accession:
    I3L0S3

    Protein attributes for PYCARD-AS1 Gene

    Size:
    204 amino acids
    Molecular mass:
    21949 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BX464768; Type=Frameshift; Positions=177; Evidence={ECO:0000305};

neXtProt entry for PYCARD-AS1 Gene

Post-translational modifications for PYCARD-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for PYCARD-AS1 Gene

Domains & Families for PYCARD-AS1 Gene

Protein Domains for PYCARD-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PYCARD-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PYCARD-AS1 Gene

Function for PYCARD-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PYCARD-AS1 Gene

Localization for PYCARD-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PYCARD-AS1 Gene

Pathways & Interactions for PYCARD-AS1 Gene

SuperPathways for PYCARD-AS1 Gene

No Data Available

Interacting Proteins for PYCARD-AS1 Gene

Gene Ontology (GO) - Biological Process for PYCARD-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PYCARD-AS1 Gene

Drugs & Compounds for PYCARD-AS1 Gene

No Compound Related Data Available

Transcripts for PYCARD-AS1 Gene

mRNA/cDNA for PYCARD-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PYCARD-AS1 Gene

No ASD Table

Relevant External Links for PYCARD-AS1 Gene

GeneLoc Exon Structure for
PYCARD-AS1
ECgene alternative splicing isoforms for
PYCARD-AS1

Expression for PYCARD-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PYCARD-AS1 Gene

Protein differential expression in normal tissues from HIPED for PYCARD-AS1 Gene

This gene is overexpressed in Platelet (68.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for PYCARD-AS1 Gene



Protein tissue co-expression partners for PYCARD-AS1 Gene

genes like me logo Genes that share expression patterns with PYCARD-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PYCARD-AS1 Gene

Orthologs for PYCARD-AS1 Gene

Evolution for PYCARD-AS1 Gene

ENSEMBL:
Gene Tree for PYCARD-AS1 (if available)
TreeFam:
Gene Tree for PYCARD-AS1 (if available)

No data available for Orthologs for PYCARD-AS1 Gene

Paralogs for PYCARD-AS1 Gene

No data available for Paralogs for PYCARD-AS1 Gene

Variants for PYCARD-AS1 Gene

Sequence variations from dbSNP and Humsavar for PYCARD-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000722745 -- 31,203,915(+) GCTGT(A/G)ATGCC intron-variant, upstream-variant-2KB
rs1001661265 -- 31,201,367(+) AAGGA(C/T)GGGGG downstream-variant-500B, upstream-variant-2KB
rs1002321311 -- 31,202,869(+) GTCCC(C/G)TCCCA nc-transcript-variant, upstream-variant-2KB
rs1002787067 -- 31,202,511(+) TCCAG(C/G)TAGAA nc-transcript-variant, reference, stop-gained
rs1002931926 -- 31,200,189(+) TCATA(C/T)TTCCC upstream-variant-2KB

Variation tolerance for PYCARD-AS1 Gene

Gene Damage Index Score: 2.39; 42.32% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PYCARD-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PYCARD-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for PYCARD-AS1 Gene

Disorders for PYCARD-AS1 Gene

Relevant External Links for PYCARD-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PYCARD-AS1

No disorders were found for PYCARD-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PYCARD-AS1 Gene

Publications for PYCARD-AS1 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4 64

Products for PYCARD-AS1 Gene

Sources for PYCARD-AS1 Gene

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