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Aliases for PVALEF Gene

Aliases for PVALEF Gene

  • Parvalbumin Like EF-Hand Containing 2 3
  • AATK Antisense RNA 1 (Non-Protein Coding) 2 3
  • AATK Antisense RNA 1 2 5
  • AATK-AS1 3 5

External Ids for PVALEF Gene

Previous HGNC Symbols for PVALEF Gene

  • AATK-AS1

Summaries for PVALEF Gene

GeneCards Summary for PVALEF Gene

PVALEF (Parvalbumin Like EF-Hand Containing) is a Protein Coding gene.

Additional gene information for PVALEF Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PVALEF Gene

Genomics for PVALEF Gene

Regulatory Elements for PVALEF Gene

Enhancers for PVALEF Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H081125 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12.7 -35.5 -35533 9 TBP ZNF133 DMAP1 BRCA1 RAD21 RARA RFX5 GLIS2 EGR1 SCRT2 AATK CEP131 LOC100294362 ENDOV PVALEF GPS1 ARL16 RFNG ENSG00000262877 BAIAP2
GH17H081138 0.7 dbSUPER 12.7 -26.5 -26456 1 ZSCAN4 INSM2 MNT PAX8 ZFHX2 ZNF707 ZNF341 ZNF524 KLF7 KDM1A AATK OXLD1 PVALEF ALYREF HGS CCDC137 CEP131 LOC105371925 TEPSIN GC17P081143
GH17H081136 0.5 dbSUPER 12.7 -29.0 -29048 0 GLIS2 RFX1 GLIS1 ZIC2 AATK PVALEF ENSG00000263167 GC17P081143
GH17H081163 1.2 ENCODE dbSUPER 0.7 -0.6 -602 2 MLX ZFP64 ARID4B DMAP1 ZNF2 ZNF121 GLIS2 MXD4 MIER2 PPARG LOC100294362 ENDOV CEP131 GPS1 MIR1250 AATK ENSG00000265678 ARL16 RFNG ENSG00000262877
GH17H081152 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -11.9 -11944 1 HDAC1 PKNOX1 ATF1 TBL1XR1 ZBTB40 ELK1 EGR1 ATF7 CREM NCOA1 AATK ENSG00000263167 TEPSIN GC17P081143 PVALEF
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PVALEF on UCSC Golden Path with GeneCards custom track

Promoters for PVALEF Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000099350 793 601 ELF3 TBP MLX ZFP64 ARID4B DMAP1 ZNF2 ZSCAN9 ZNF121 MIXL1

Genomic Location for PVALEF Gene

Chromosome:
17
Start:
81,165,507 bp from pter
End:
81,183,164 bp from pter
Size:
17,658 bases
Orientation:
Plus strand

Genomic View for PVALEF Gene

Genes around PVALEF on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PVALEF Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PVALEF Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PVALEF Gene

Proteins for PVALEF Gene

  • Protein details for PVALEF Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GWK0
    Recommended name:
    AATK antisense RNA 1
    Protein Accession:
    A0A1B0GWK0

    Protein attributes for PVALEF Gene

    Size:
    134 amino acids
    Molecular mass:
    15275 Da
    Quaternary structure:
    No Data Available

neXtProt entry for PVALEF Gene

Post-translational modifications for PVALEF Gene

No Post-translational modifications

Other Protein References for PVALEF Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for PVALEF Gene

Domains & Families for PVALEF Gene

Protein Domains for PVALEF Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PVALEF: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PVALEF Gene

Function for PVALEF Gene

Gene Ontology (GO) - Molecular Function for PVALEF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with PVALEF: view

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for PVALEF
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PVALEF Gene

Localization for PVALEF Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PVALEF Gene

Pathways & Interactions for PVALEF Gene

SuperPathways for PVALEF Gene

No Data Available

Interacting Proteins for PVALEF Gene

Gene Ontology (GO) - Biological Process for PVALEF Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PVALEF Gene

Drugs & Compounds for PVALEF Gene

No Compound Related Data Available

Transcripts for PVALEF Gene

mRNA/cDNA for PVALEF Gene

(2) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for PVALEF
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for PVALEF Gene

No ASD Table

Relevant External Links for PVALEF Gene

GeneLoc Exon Structure for
PVALEF
ECgene alternative splicing isoforms for
PVALEF

Expression for PVALEF Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PVALEF Gene

Orthologs for PVALEF Gene

Evolution for PVALEF Gene

ENSEMBL:
Gene Tree for PVALEF (if available)
TreeFam:
Gene Tree for PVALEF (if available)

No data available for Orthologs for PVALEF Gene

Paralogs for PVALEF Gene

No data available for Paralogs for PVALEF Gene

Variants for PVALEF Gene

Sequence variations from dbSNP and Humsavar for PVALEF Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000075806 -- 81,167,786(+) TAAGG(A/G)GCGCT intron-variant, upstream-variant-2KB
rs1000239539 -- 81,182,865(+) GTAGT(C/T)CAGGC intron-variant
rs1000264795 -- 81,172,154(+) TTCCA(C/T)TGTGT intron-variant
rs1000293254 -- 81,183,093(+) TGGGG(A/C)CGGTA nc-transcript-variant
rs1000447476 -- 81,179,050(+) AGCCC(C/T)GAGAT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for PVALEF Gene

Variant ID Type Subtype PubMed ID
dgv3292n100 CNV gain 25217958
dgv46n68 CNV loss 17160897
esv26223 CNV gain+loss 19812545
esv2758707 CNV gain 17122850
esv3353282 CNV duplication 20981092
esv3554876 CNV deletion 23714750
nsv1057306 CNV loss 25217958
nsv1064123 CNV gain 25217958
nsv1065052 CNV gain 25217958
nsv1066947 CNV loss 25217958
nsv1127605 CNV deletion 24896259
nsv1143868 CNV deletion 24896259
nsv428351 CNV gain 18775914
nsv470619 CNV loss 18288195
nsv473977 CNV novel sequence insertion 20440878
nsv828128 CNV loss 20364138
nsv828133 CNV loss 20364138
nsv952389 CNV deletion 24416366

Relevant External Links for PVALEF Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PVALEF

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PVALEF Gene

Disorders for PVALEF Gene

Relevant External Links for PVALEF

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PVALEF
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PVALEF

No disorders were found for PVALEF Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PVALEF Gene

Publications for PVALEF Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for PVALEF Gene

Sources for PVALEF Gene

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