PVALB Gene
protein-coding GIFtS : 54
GCID: GC22 M037196
parvalbumin
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Aliasesfor PVALB gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Parvalbumin 1 D22S7491 2 Parvalbumin Alpha2
Export aliases for PVALB gene to outside databases Previous GC identifers: GC22M033811 GC22M035439 GC22M035521 GC22M020159
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Summariesfor PVALB gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for PVALB : The protein encoded by this gene is a high affinity calcium ion-binding protein that is structurally and functionally similar to calmodulin and troponin C. The encoded protein is thought to be involved in muscle relaxation. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: PRVA_HUMAN, P20472 Function : In muscle, parvalbumin is thought to be involved in relaxation after contraction. It binds two calcium ions
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Genomic Viewsfor PVALB gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000022.10 NC_018933.1 NT_011520.12 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PVALB gene promoter: Pax-5 AML1a Lmo2 XBP-1 IRF-1 AP-4 Nkx2-5 E47 MZF-1 Cart-1 Other transcription factors Search SABiosciences Chromatin IP Primers for PVALB Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat PVALB
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 22q13.1 Ensembl cytogenetic band: 22q12.3 HGNC cytogenetic band: 22q13.1 PVALB Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 22 GeneLoc Exon Structure
GeneLoc location for GC22M037196: view genomic region
(about GC identifiers )
Start:
37,196,728 bp from pter
End:
37,215,523 bp from pter
Size:
18,796 bases
Orientation:
minus strand
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Proteinsfor PVALB gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: PRVA_HUMAN, P20472 (See
protein sequence )Recommended Name: Parvalbumin alpha Size : 110 amino acids; 12059 Da
Mass spectrometry : Mass=11927; Mass_error=0.76; Method=Electrospray; Range=2-110; Source=PubMed:10036163;
2 PDB 3D structures from and Proteopedia for PVALB :1RJV (3D)
  1RK9 (3D)
 
Secondary accessions : B2R4H7 P78378 Q4VB78 Q5R3Q9Explore the universe of human proteins at neXtProt for PVALB: NX_P20472 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P20472 PVALB Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_002845.1 ENSEMBL proteins: ENSP00000400247 ENSP00000216200 ENSP00000384735 ENSP00000386089 ENSP00000406977 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
PVALB for ontologies About GeneDecksing PVALB Antibody Products: Assay Products for PVALB:
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Protein
Domains / Familiesfor PVALB gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
PVALB for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P20472 ProtoNet protein and cluster: P20472
1 Blocks protein family : IPB008080 Parvalbumin signature UniProtKB/Swiss-Prot: PRVA_HUMAN, P20472 Similarity : Belongs to the parvalbumin familySimilarity : Contains 2 EF-hand domains
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Functionfor PVALB gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: PRVA_HUMAN, P20472 Function : In muscle, parvalbumin is thought to be involved in relaxation after contraction. It binds two calcium ions
Genatlas biochemistry entry for PVALB : parvalbumin,high affinity calcium binding protein,in muscle fibers IIB and GABAergic cells Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PVALB (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PVALBOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: PVALB (NM_002854 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PVALB Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PVALB
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005509 calcium ion binding
IEA --
PVALB for ontologies About GeneDecksing 3 GenomeRNAi human phenotypes for PVALB :Animal Models: Mouse knock-out Pvalb tm1Swal for PVALB 6 MGI mutant phenotypes (inferred from 6 alleles ) (MGI details for Pvalb) :
PVALB for phenotypes About GeneDecksing
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Pathways & Interactionsfor PVALB gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for PVALB
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Drugs & Compoundsfor PVALB gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
PVALB for compounds About GeneDecksing Browse Tocris compounds for PVALB 1 HMDB Compound for PVALB About this table 1 DrugBank Compound for PVALB About this table 10/45 Novoseek chemical compound relationships for PVALB gene (see all 45 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
lant-6
72.6
4
8252409 (3), 9290931 (1)
gaba
70.9
71
10501476 (3), 7953747 (3), 17375209 (3), 8252409 (2) (see all 39 )
calcium
65.6
205
8801253 (4), 1512554 (4), 10036163 (4), 7641793 (3) (see all 99 )
glutamate
60.9
40
8979811 (2), 8813295 (1), 14708030 (1), 17439984 (1) (see all 33 )
choline
56.7
21
10392842 (2), 9469576 (1), 10495446 (1), 15922606 (1) (see all 20 )
allergens
52.7
23
20232779 (3), 15147451 (2), 10637712 (1), 17272958 (1) (see all 19 )
nmda
40.7
10
16452684 (3), 8801253 (1), 9520096 (1), 20148871 (1) (see all 6 )
kainate
37.4
4
8752591 (2), 11074157 (1)
tyrosine
26.9
20
20383714 (2), 10495446 (1), 10967083 (1), 14708030 (1) (see all 19 )
cyanine
25.3
2
10408601 (1), 14754864 (1)
Search CenterWatch for drugs/clinical trials and news about PVALB / PRVA
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Transcriptsfor PVALB gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for PVALB gene: NM_002854.2 Unigene Cluster for PVALB:
Parvalbumin Hs.295449 [show with all ESTs ] Unigene Representative Sequence: AA203126 6 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000417718 (uc010gwz.3 ) ENST00000216200 (uc003apx.3 ) ENST00000406910 ENST00000404171 ENST00000467935 ENST00000443735 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PVALB (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PVALBOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: PVALB (NM_002854 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PVALB Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PVALB
Additional cDNA sequence: AK311832.1 BC069300.1 BC096112.3 BC096113.3 BC096114.1 BC096115.1 CR456552.1 X63070.1
3 DOTS entries : DT.116063 DT.92424907
DT.95086084 24/98 AceView cDNA sequences (see all 98 ):
AW139024 AA010609 NM_002854 BC069300 X63070 CR456552 H47665 BX098124 AI003770 BP428769 AI022812 H92210 AI765610 AW271690 W63631 AI948673 AA010608 BQ638514 BM687969 H18303 AI027079 AI057566 H47585 BP431092 GeneLoc Exon Structure
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Expression for PVALB gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section PVALB expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CTGGACAAGG
About this image PVALB expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See PVALB Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for PVALB SOURCE GeneReport for Unigene cluster: Hs.295449 SABiosciences Custom PCR Arrays for PVALB Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PVALBBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat PVALB QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PVALB QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PVALB
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Orthologsfor PVALB gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for PVALB gene from 5/11 species (see all 11 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
mouse (Mus musculus)
Mammalia
Pvalb1 , 5
parvalbumin1, 5
89.09(n) 1 87.27(a) 1
 
15 (36.93 cM) 5 19293 1 NM_013645.3 1 NP_038673.2 1 78191114 5
chicken (Gallus gallus)
Aves
PVALB1
parvalbumin
74.55(n) 79.09(a)
 
396459 NM_001159315.1 NP_001152787.1
lizard (Anolis carolinensis)
Reptilia
PVALB6
--
79(a)
1 ↔ 1
5(22525081-22545708)
tropical clawed frog (Xenopus tropicalis)
Amphibia
BX724784.12
--
76.47(n)
 
BX724784.1
zebrafish (Danio rerio)
Actinopterygii
Dr.141472
Danio rerio parvalbumin isoform 4b mRNA, complete cds
69.55(n)
 
AF467913.1
ENSEMBL Gene Tree for PVALB (if available)TreeFam Gene Tree for PVALB (if available)
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Paralogsfor PVALB gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for PVALB gene OCM2 2 OCM 2 10 SIMAP similar genes for PVALB using alignment to 4 protein entries: PRVA_HUMAN (see all proteins ):OCM2 OCM CALN1 CALM1 CALM2 CALM3 TNNC2 HZGJ PPP3R1 PPP3R2
PVALB for paralogs About GeneDecksing
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Genomic Variantsfor PVALB gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 22 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More