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Aliases for PTPN7 Gene

Aliases for PTPN7 Gene

  • Protein Tyrosine Phosphatase, Non-Receptor Type 7 2 3
  • Hematopoietic Protein-Tyrosine Phosphatase 3 4
  • Protein-Tyrosine Phosphatase LC-PTP 3 4
  • EC 3.1.3.48 4 64
  • HEPTP 3 4
  • Protein-Tyrosine Phosphatase, Nonreceptor-Type, Stress Induced 3
  • Tyrosine-Protein Phosphatase Non-Receptor Type 7 3
  • Dual Specificity Phosphatase 1 3
  • BPTP-4 3
  • LC-PTP 3
  • PTPNI 3
  • LPTP 3

External Ids for PTPN7 Gene

Summaries for PTPN7 Gene

Entrez Gene Summary for PTPN7 Gene

  • The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This gene is preferentially expressed in a variety of hematopoietic cells, and is an early response gene in lymphokine stimulated cells. The non-catalytic N-terminus of this PTP can interact with MAP kinases and suppress the MAP kinase activities. This PTP was shown to be involved in the regulation of T cell antigen receptor (TCR) signaling, which was thought to function through dephosphorylating the molecules related to MAP kinase pathway. Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Dec 2010]

GeneCards Summary for PTPN7 Gene

PTPN7 (Protein Tyrosine Phosphatase, Non-Receptor Type 7) is a Protein Coding gene. Among its related pathways are MAPK signaling pathway and PAK Pathway. GO annotations related to this gene include protein tyrosine phosphatase activity. An important paralog of this gene is PTPRO.

UniProtKB/Swiss-Prot for PTPN7 Gene

  • Protein phosphatase that acts preferentially on tyrosine-phosphorylated MAPK1. Plays a role in the regulation of T and B-lymphocyte development and signal transduction.

Gene Wiki entry for PTPN7 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PTPN7 Gene

Genomics for PTPN7 Gene

Genomic Location for PTPN7 Gene

Start:
202,147,013 bp from pter
End:
202,161,588 bp from pter
Size:
14,576 bases
Orientation:
Minus strand

Genomic View for PTPN7 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PTPN7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTPN7 Gene

Regulatory Elements for PTPN7 Gene

Proteins for PTPN7 Gene

  • Protein details for PTPN7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P35236-PTN7_HUMAN
    Recommended name:
    Tyrosine-protein phosphatase non-receptor type 7
    Protein Accession:
    P35236
    Secondary Accessions:
    • B3KXE1
    • Q53XK4
    • Q5SXQ0
    • Q5SXQ1
    • Q9BV05

    Protein attributes for PTPN7 Gene

    Size:
    360 amino acids
    Molecular mass:
    40529 Da
    Quaternary structure:
    • Monomer. Interacts with MAPK1, MAPK3 and several other MAP kinases.
    SequenceCaution:
    • Sequence=AAA59531.1; Type=Frameshift; Positions=5; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for PTPN7 Gene

    Alternative splice isoforms for PTPN7 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PTPN7 Gene

Proteomics data for PTPN7 Gene at MOPED

Selected DME Specific Peptides for PTPN7 Gene

Post-translational modifications for PTPN7 Gene

  • Oxidized at active site cysteine. Treatment with pervanadate (vanadate and H(2)O(2)) or with antigen enhanced oxidation of active site cysteine (By similarity).
  • Phosphorylated on serine residues in resting T-cells. Phosphorylation increases upon exposure to stimuli that increase intracellular cAMP levels. Phosphorylation leads to dissociation of bound MAP kinases.
  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys103, Lys226, Lys248, and Lys312

Domains for PTPN7 Gene

Gene Families for PTPN7 Gene

HGNC:
  • PTPN :Protein tyrosine phosphatases / Class I Cys-based PTPs : Non-receptor

UniProtKB/Swiss-Prot:

PTN7_HUMAN
Domain:
  • Contains 1 tyrosine-protein phosphatase domain.:
    • P35236
Family:
  • Belongs to the protein-tyrosine phosphatase family. Non-receptor class subfamily.:
    • P35236
genes like me logo Genes that share domains with PTPN7: view

Function for PTPN7 Gene

Molecular function for PTPN7 Gene

GENATLAS Biochemistry: protein tyrosine phosphatase,non receptor type 7,stress-induced,expressed in hematopoietic cells
UniProtKB/Swiss-Prot CatalyticActivity: Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate.
UniProtKB/Swiss-Prot EnzymeRegulation: Inhibited in cells after FCER1A triggering.
UniProtKB/Swiss-Prot Function: Protein phosphatase that acts preferentially on tyrosine-phosphorylated MAPK1. Plays a role in the regulation of T and B-lymphocyte development and signal transduction.

Enzyme Numbers (IUBMB) for PTPN7 Gene

Gene Ontology (GO) - Molecular Function for PTPN7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004725 protein tyrosine phosphatase activity IEA --
GO:0005515 protein binding IPI 10415025
GO:0016791 phosphatase activity --
genes like me logo Genes that share ontologies with PTPN7: view
genes like me logo Genes that share phenotypes with PTPN7: view

Animal Models for PTPN7 Gene

MGI Knock Outs for PTPN7:

miRNA for PTPN7 Gene

miRTarBase miRNAs that target PTPN7

No data available for Transcription Factor Targeting and HOMER Transcription for PTPN7 Gene

Localization for PTPN7 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PTPN7 Gene

Cytoplasm. Cytoplasm, cytoskeleton.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PTPN7 Gene COMPARTMENTS Subcellular localization image for PTPN7 gene
Compartment Confidence
plasma membrane 5
cytosol 4
cytoskeleton 2
mitochondrion 2
golgi apparatus 1
nucleus 1

Gene Ontology (GO) - Cellular Components for PTPN7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA 10940933
GO:0005829 cytosol IDA 10940933
GO:0005856 cytoskeleton IEA --
GO:0009898 cytoplasmic side of plasma membrane IDA 10940933
genes like me logo Genes that share ontologies with PTPN7: view

Pathways for PTPN7 Gene

genes like me logo Genes that share pathways with PTPN7: view

Pathways by source for PTPN7 Gene

1 GeneGo (Thomson Reuters Life Sciences Research) pathway for PTPN7 Gene
1 Qiagen pathway for PTPN7 Gene

Gene Ontology (GO) - Biological Process for PTPN7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006470 protein dephosphorylation TAS 1530918
GO:0016311 dephosphorylation --
GO:0035335 peptidyl-tyrosine dephosphorylation TAS 1530918
genes like me logo Genes that share ontologies with PTPN7: view

Compounds for PTPN7 Gene

(3) HMDB Compounds for PTPN7 Gene

Compound Synonyms Cas Number PubMed IDs
Cyclic AMP
  • Cyclic AMP
60-92-4
Phosphate
  • NFB Orthophosphate
14265-44-2
Water
  • Dihydrogen oxide
7732-18-5

(1) Novoseek inferred chemical compound relationships for PTPN7 Gene

Compound -log(P) Hits PubMed IDs
tyrosine 58.6 12
genes like me logo Genes that share compounds with PTPN7: view

Transcripts for PTPN7 Gene

Unigene Clusters for PTPN7 Gene

Protein tyrosine phosphatase, non-receptor type 7:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PTPN7 Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c · 2d ^ 3a · 3b · 3c · 3d · 3e ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10 ^ 11
SP1: - - - - -
SP2: - - - - -
SP3: - - - -
SP4: - - - - -
SP5: - - - - - -
SP6: - - - - - - -
SP7: - - - - -
SP8: - - - - - - -
SP9: - - - - - - -
SP10: - - - -
SP11: - - - - - - - - - - - -
SP12: - - - - - -
SP13: - - - -
SP14: -
SP15: -

Relevant External Links for PTPN7 Gene

GeneLoc Exon Structure for
PTPN7
ECgene alternative splicing isoforms for
PTPN7

Expression for PTPN7 Gene

mRNA expression in normal human tissues for PTPN7 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PTPN7 Gene

This gene is overexpressed in Whole Blood (12.7), Spleen (4.6), and Brain - Putamen (basal ganglia) (4.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for PTPN7 Gene

SOURCE GeneReport for Unigene cluster for PTPN7 Gene Hs.402773

mRNA Expression by UniProt/SwissProt for PTPN7 Gene

P35236-PTN7_HUMAN
Tissue specificity: Expressed exclusively in thymus and spleen.
genes like me logo Genes that share expressions with PTPN7: view

Orthologs for PTPN7 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for PTPN7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PTPN7 36
  • 99.38 (n)
  • 99.47 (a)
PTPN7 37
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia PTPN7 36
  • 85.47 (n)
  • 89.42 (a)
PTPN7 37
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PTPN7 36
  • 88.52 (n)
  • 92.5 (a)
PTPN7 37
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ptpn7 36
  • 88.95 (n)
  • 92.48 (a)
Ptpn7 16
Ptpn7 37
  • 92 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PTPN7 37
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PTPN7 37
  • 82 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ptpn7 36
  • 88.3 (n)
  • 91.64 (a)
chicken
(Gallus gallus)
Aves PTPN7 36
  • 70.32 (n)
  • 68.82 (a)
PTPN7 37
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PTPN7 37
  • 62 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG42327 37
  • 9 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea M04G7.2 38
  • 33 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PTP1 37
  • 28 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 28 (a)
OneToMany
Species with no ortholog for PTPN7:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for PTPN7 Gene

ENSEMBL:
Gene Tree for PTPN7 (if available)
TreeFam:
Gene Tree for PTPN7 (if available)

Paralogs for PTPN7 Gene

Paralogs for PTPN7 Gene

genes like me logo Genes that share paralogs with PTPN7: view

Variants for PTPN7 Gene

Sequence variations from dbSNP and Humsavar for PTPN7 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs9077 -- 202,147,110(-) CCTCC(C/T)TGGCA utr-variant-3-prime, nc-transcript-variant
rs1126443 -- 202,148,262(-) TGTGA(G/T)CTTCA utr-variant-3-prime, nc-transcript-variant
rs2070257 -- 202,147,874(-) GACTA(C/T)TCAGA utr-variant-3-prime, nc-transcript-variant
rs3934648 -- 202,161,626(-) TGTGC(A/G)TGTTG upstream-variant-2KB
rs3935295 -- 202,160,767(+) GCCCC(A/G)TTCCC intron-variant, reference, missense, upstream-variant-2KB, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for PTPN7 Gene

Variant ID Type Subtype PubMed ID
nsv873103 CNV Loss 21882294
nsv522841 CNV Gain 19592680
nsv467972 CNV Loss 19166990

Relevant External Links for PTPN7 Gene

HapMap Linkage Disequilibrium report
PTPN7

Disorders for PTPN7 Gene

Relevant External Links for PTPN7

Human Genome Epidemiology (HuGE) Navigator
PTPN7
genes like me logo Genes that share disorders with PTPN7: view

No data available for UniProtKB/Swiss-Prot for PTPN7 Gene

Publications for PTPN7 Gene

  1. Molecular cloning and chromosomal mapping of a human protein-tyrosine phosphatase LC-PTP. (PMID: 1510684) Adachi M. … Yachi A. (Biochem. Biophys. Res. Commun. 1992) 2 3 4 23
  2. Structure of the hematopoietic tyrosine phosphatase (HePTP) catalytic domain: structure of a KIM phosphatase with phosphate bound at the active site. (PMID: 16226275) Mustelin T. … Page R. (J. Mol. Biol. 2005) 3 4 23
  3. Negative regulation of T cell antigen receptor signal transduction by hematopoietic tyrosine phosphatase (HePTP). (PMID: 9624114) Saxena M. … Mustelin T. (J. Biol. Chem. 1998) 3 4 23
  4. Inhibition of T cell signaling by mitogen-activated protein kinase- targeted hematopoietic tyrosine phosphatase (HePTP). (PMID: 10206983) Saxena M. … Mustelin T. (J. Biol. Chem. 1999) 3 4 23
  5. Crosstalk between cAMP-dependent kinase and MAP kinase through a protein tyrosine phosphatase. (PMID: 10559944) Saxena M. … Mustelin T. (Nat. Cell Biol. 1999) 3 4 23

Products for PTPN7 Gene

Sources for PTPN7 Gene

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