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Aliases for PTPN5 Gene

Aliases for PTPN5 Gene

  • Protein Tyrosine Phosphatase, Non-Receptor Type 5 2 3 5
  • Protein Tyrosine Phosphatase, Non-Receptor Type 5 (Striatum-Enriched) 2 3
  • Striatal-Enriched Protein Tyrosine Phosphatase 2 3
  • Striatum-Enriched Protein-Tyrosine Phosphatase 3 4
  • Neural-Specific Protein-Tyrosine Phosphatase 3 4
  • EC 3.1.3.48 4 61
  • STEP 3 4
  • Tyrosine-Protein Phosphatase Non-Receptor Type 5 3
  • Protein-Tyrosine Phosphatase Striatum-Enriched 3
  • PTPSTEP 3
  • STEP61 3

External Ids for PTPN5 Gene

Previous GeneCards Identifiers for PTPN5 Gene

  • GC11U990112
  • GC11M019694
  • GC11M018788
  • GC11M018713
  • GC11M018706
  • GC11M018434

Summaries for PTPN5 Gene

GeneCards Summary for PTPN5 Gene

PTPN5 (Protein Tyrosine Phosphatase, Non-Receptor Type 5) is a Protein Coding gene. Among its related pathways are Long-term potentiation and Neuroscience. GO annotations related to this gene include phosphatase activity and phosphotyrosine binding. An important paralog of this gene is PTPRR.

UniProtKB/Swiss-Prot for PTPN5 Gene

  • May regulate the activity of several effector molecules involved in synaptic plasticity and neuronal cell survival, including MAPKs, Src family kinases and NMDA receptors.

Gene Wiki entry for PTPN5 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PTPN5 Gene

Genomics for PTPN5 Gene

Regulatory Elements for PTPN5 Gene

Enhancers for PTPN5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G018771 0.6 dbSUPER 20.7 +20.5 20470 1.6 USF1 POLR2A SMARCA4 KDM1A ZNF623 EZH2 PTPN5 LDHA SERGEF PIR60589
GH11G018791 0.7 ENCODE 14.8 +1.0 995 1.0 CTCF MAZ MXI1 SP3 SUZ12 SP2 ZBTB8A RBBP5 ZFHX2 POLR2A PTPN5 PIR60589
GH11G018768 0.8 dbSUPER 11.7 +23.9 23930 1.0 TBL1XR1 BMI1 SCRT2 ZNF207 ETV6 RELB IKZF2 CREM JUNB GATAD2B PTPN5 IGSF22 LOC105376579 LDHA SERGEF PIR60589
GH11G018760 0.5 dbSUPER 11.6 +31.1 31110 3.1 NR2F1 HLF MNT PTPN5 IGSF22 LOC105376579 HIGD1AP5 SAAL1 PIR60589
GH11G018819 0.5 ENCODE 10.7 -28.0 -28021 1.5 PKNOX1 MTA2 IKZF1 IRF1 LOC645397 PTPN5 GC11P018827
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PTPN5 on UCSC Golden Path with GeneCards custom track

Genomic Location for PTPN5 Gene

Chromosome:
11
Start:
18,727,928 bp from pter
End:
18,792,721 bp from pter
Size:
64,794 bases
Orientation:
Minus strand

Genomic View for PTPN5 Gene

Genes around PTPN5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PTPN5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTPN5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTPN5 Gene

Proteins for PTPN5 Gene

  • Protein details for PTPN5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P54829-PTN5_HUMAN
    Recommended name:
    Tyrosine-protein phosphatase non-receptor type 5
    Protein Accession:
    P54829
    Secondary Accessions:
    • B3KXG7
    • B7Z386
    • B7ZAF5
    • D3DQY7
    • Q6P1Z2
    • Q8N2A1
    • Q8NDP8

    Protein attributes for PTPN5 Gene

    Size:
    565 amino acids
    Molecular mass:
    63538 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for PTPN5 Gene

    Alternative splice isoforms for PTPN5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PTPN5 Gene

Selected DME Specific Peptides for PTPN5 Gene

P54829:
  • YIATQGP
  • PIIVHCS
  • DFWRMVW
  • RYKTILPNP
  • GRTGCFI
  • HCSAGIGR
  • LQERRGS

Post-translational modifications for PTPN5 Gene

  • Phosphorylation at Ser-245 by PKA deactivates PTPN5. Phosphorylation at Thr-255 and Ser-268 by MAPKs stabilizes the phosphatase, dephosphorylation of these sites results in ubiquitin-mediated degradation of the active phosphatase.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for PTPN5 (STEP)
  • Cloud-Clone Corp. Antibodies for PTPN5

Domains & Families for PTPN5 Gene

Gene Families for PTPN5 Gene

Graphical View of Domain Structure for InterPro Entry

P54829

UniProtKB/Swiss-Prot:

PTN5_HUMAN :
  • Belongs to the protein-tyrosine phosphatase family. Non-receptor class subfamily.
Family:
  • Belongs to the protein-tyrosine phosphatase family. Non-receptor class subfamily.
genes like me logo Genes that share domains with PTPN5: view

Function for PTPN5 Gene

Molecular function for PTPN5 Gene

GENATLAS Biochemistry:
protein tyrosine phosphatase,non receptor type 5,homologous to murine striatum enriched phosphatase
UniProtKB/Swiss-Prot CatalyticActivity:
Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate.
UniProtKB/Swiss-Prot Function:
May regulate the activity of several effector molecules involved in synaptic plasticity and neuronal cell survival, including MAPKs, Src family kinases and NMDA receptors.

Enzyme Numbers (IUBMB) for PTPN5 Gene

Gene Ontology (GO) - Molecular Function for PTPN5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001784 phosphotyrosine binding IDA 16441242
GO:0004721 phosphoprotein phosphatase activity IEA --
GO:0004725 protein tyrosine phosphatase activity TAS 7490079
GO:0005515 protein binding IPI 21044950
GO:0016787 hydrolase activity IEA --
genes like me logo Genes that share ontologies with PTPN5: view
genes like me logo Genes that share phenotypes with PTPN5: view

Animal Models for PTPN5 Gene

MGI Knock Outs for PTPN5:

Animal Model Products

  • Taconic Biosciences Mouse Models for PTPN5

CRISPR Products

miRNA for PTPN5 Gene

miRTarBase miRNAs that target PTPN5

Inhibitory RNA Products

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for PTPN5 Gene

Localization for PTPN5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PTPN5 Gene

Endoplasmic reticulum membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PTPN5 gene
Compartment Confidence
plasma membrane 3
endoplasmic reticulum 3
cytosol 2

Gene Ontology (GO) - Cellular Components for PTPN5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IEA --
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane TAS 2263249
genes like me logo Genes that share ontologies with PTPN5: view

Pathways & Interactions for PTPN5 Gene

genes like me logo Genes that share pathways with PTPN5: view

Pathways by source for PTPN5 Gene

1 Cell Signaling Technology pathway for PTPN5 Gene
2 BioSystems pathways for PTPN5 Gene
1 KEGG pathway for PTPN5 Gene
1 GeneGo (Thomson Reuters) pathway for PTPN5 Gene
1 R&D Systems pathway for PTPN5 Gene
1 Qiagen pathway for PTPN5 Gene

SIGNOR curated interactions for PTPN5 Gene

Activates:
Inactivates:

Gene Ontology (GO) - Biological Process for PTPN5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006470 protein dephosphorylation TAS 7490079
GO:0016311 dephosphorylation IEA --
GO:0035335 peptidyl-tyrosine dephosphorylation IEA --
genes like me logo Genes that share ontologies with PTPN5: view

Drugs & Compounds for PTPN5 Gene

(2) Drugs for PTPN5 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Phosphoric acid Approved Pharma 0
Water Approved Pharma 0

(1) Additional Compounds for PTPN5 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Phosphate
  • NFB Orthophosphate
  • O-Phosphoric acid
  • Ortho-phosphate
  • Orthophosphate (PO43-)
  • Orthophosphate(3-)
14265-44-2
genes like me logo Genes that share compounds with PTPN5: view

Transcripts for PTPN5 Gene

Unigene Clusters for PTPN5 Gene

Protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for PTPN5 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15a · 15b
SP1: - - -
SP2: - -
SP3: - - - -
SP4:
SP5:

Relevant External Links for PTPN5 Gene

GeneLoc Exon Structure for
PTPN5
ECgene alternative splicing isoforms for
PTPN5

Expression for PTPN5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PTPN5 Gene

mRNA differential expression in normal tissues according to GTEx for PTPN5 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x13.2), Brain - Putamen (basal ganglia) (x12.4), and Brain - Caudate (basal ganglia) (x10.2).

Protein differential expression in normal tissues from HIPED for PTPN5 Gene

This gene is overexpressed in Fetal Brain (35.2), Monocytes (16.4), and Frontal cortex (16.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for PTPN5 Gene



Protein tissue co-expression partners for PTPN5 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of PTPN5 Gene:

PTPN5

SOURCE GeneReport for Unigene cluster for PTPN5 Gene:

Hs.79092

Evidence on tissue expression from TISSUES for PTPN5 Gene

  • Nervous system(5)
genes like me logo Genes that share expression patterns with PTPN5: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTPN5 Gene

Orthologs for PTPN5 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for PTPN5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PTPN5 34 35
  • 99.59 (n)
cow
(Bos Taurus)
Mammalia PTPN5 34 35
  • 90.54 (n)
rat
(Rattus norvegicus)
Mammalia Ptpn5 34
  • 90.06 (n)
dog
(Canis familiaris)
Mammalia PTPN5 34 35
  • 89.97 (n)
mouse
(Mus musculus)
Mammalia Ptpn5 34 16 35
  • 88.66 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia PTPN5 35
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PTPN5 35
  • 77 (a)
OneToOne
chicken
(Gallus gallus)
Aves PTPN5 34 35
  • 67.18 (n)
lizard
(Anolis carolinensis)
Reptilia PTPN5 35
  • 69 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii ptpn5 34 35
  • 62.85 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG42327 35
  • 10 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PTP1 35
  • 27 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 31 (a)
OneToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.2178 34
Species where no ortholog for PTPN5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PTPN5 Gene

ENSEMBL:
Gene Tree for PTPN5 (if available)
TreeFam:
Gene Tree for PTPN5 (if available)

Paralogs for PTPN5 Gene

Variants for PTPN5 Gene

Sequence variations from dbSNP and Humsavar for PTPN5 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs367543221 untested 18,729,473(+) TGGCA(C/T)GTGGT reference, synonymous-codon, missense
rs367543222 untested 18,729,810(+) TCCTC(A/T)GTCCC intron-variant, reference, synonymous-codon
rs367543223 untested 18,729,817(+) TCCCA(C/T)TCTGT intron-variant, reference, missense
rs367543224 untested 18,732,668(+) CGTAC(A/G)CCACC reference, missense
rs367543225 untested 18,733,250(+) TCCTC(A/G)ATGTT reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for PTPN5 Gene

Variant ID Type Subtype PubMed ID
esv3374278 CNV duplication 20981092
nsv1047371 CNV gain 25217958
nsv476807 CNV novel sequence insertion 20440878
nsv525192 CNV loss 19592680
nsv525452 CNV gain 19592680
nsv553633 CNV gain 21841781
nsv951317 CNV deletion 24416366

Variation tolerance for PTPN5 Gene

Residual Variation Intolerance Score: 53.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.85; 86.98% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PTPN5 Gene

Human Gene Mutation Database (HGMD)
PTPN5
SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTPN5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PTPN5 Gene

Disorders for PTPN5 Gene

Relevant External Links for PTPN5

Genetic Association Database (GAD)
PTPN5
Human Genome Epidemiology (HuGE) Navigator
PTPN5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PTPN5

No disorders were found for PTPN5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PTPN5 Gene

Publications for PTPN5 Gene

  1. Molecular cloning of the human homolog of a striatum-enriched phosphatase (STEP) gene and chromosomal mapping of the human and murine loci. (PMID: 7490079) Li X. … Francke U. (Genomics 1995) 3 4 22 64
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  3. Frameshift mutations in coding repeats of protein tyrosine phosphatase genes in colorectal tumors with microsatellite instability. (PMID: 19000305) Korff S. … Gebert J. (BMC Cancer 2008) 3 46 64
  4. Crystal structures and inhibitor identification for PTPN5, PTPRR and PTPN7: a family of human MAPK-specific protein tyrosine phosphatases. (PMID: 16441242) Eswaran J. … Barr A.J. (Biochem. J. 2006) 3 4 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64

Products for PTPN5 Gene

  • Addgene plasmids for PTPN5

Sources for PTPN5 Gene

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