Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PTPN20CP Gene

Aliases for PTPN20CP Gene

  • Protein Tyrosine Phosphatase, Non-Receptor Type 20C, Pseudogene 2 3 5
  • Protein Tyrosine Phosphatase, Non-Receptor Type 20C 2
  • BA164N7.3 3
  • PTPN20C 3

External Ids for PTPN20CP Gene

Previous HGNC Symbols for PTPN20CP Gene

  • PTPN20C

Previous GeneCards Identifiers for PTPN20CP Gene

  • GC10M049275

Summaries for PTPN20CP Gene

GeneCards Summary for PTPN20CP Gene

PTPN20CP (Protein Tyrosine Phosphatase, Non-Receptor Type 20C, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PTPN20CP Gene

Genomics for PTPN20CP Gene

Regulatory Elements for PTPN20CP Gene

Enhancers for PTPN20CP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F048253 1 ENCODE 8.1 -113.8 -113835 0.7 JUN PTPN20CP AGAP12P FRMPD2
GH10F048623 1.1 Ensembl ENCODE 4.9 -484.1 -484075 3.0 ZNF316 TARDBP IKZF1 JUN NBN EBF1 EMSY MAFK ARHGAP22 PTPN20CP ENSG00000251413 GC10M048611
GH10F048472 0.2 ENCODE 4.7 -332.3 -332298 0.2 BCOR TFDP1 ARHGAP22 PTPN20CP ENSG00000279822 ARHGAP22-IT1
GH10F048930 0.3 FANTOM5 4.2 -790.4 -790426 0.1 PTPN20CP WDFY4 ENSG00000241577 ENSG00000228403
GH10F048603 1.2 FANTOM5 ENCODE 4.2 -465.7 -465715 5.3 SIN3A RAD21 SCRT2 ZNF143 FOS ZNF263 ZNF654 CEBPB REST ZNF623 ARHGAP22 PTPN20CP GC10M048611 GC10M048584
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around PTPN20CP on UCSC Golden Path with GeneCards custom track

Genomic Location for PTPN20CP Gene

Chromosome:
10
Start:
48,064,308 bp from pter
End:
48,140,426 bp from pter
Size:
76,119 bases
Orientation:
Minus strand

Genomic View for PTPN20CP Gene

Genes around PTPN20CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PTPN20CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTPN20CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTPN20CP Gene

Proteins for PTPN20CP Gene

Post-translational modifications for PTPN20CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTPN20CP Gene

Domains & Families for PTPN20CP Gene

Gene Families for PTPN20CP Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PTPN20CP: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PTPN20CP Gene

Function for PTPN20CP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTPN20CP Gene

Localization for PTPN20CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PTPN20CP Gene

Pathways & Interactions for PTPN20CP Gene

SuperPathways for PTPN20CP Gene

No Data Available

Interacting Proteins for PTPN20CP Gene

Gene Ontology (GO) - Biological Process for PTPN20CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PTPN20CP Gene

Transcripts for PTPN20CP Gene

mRNA/cDNA for PTPN20CP Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PTPN20CP Gene

No ASD Table

Relevant External Links for PTPN20CP Gene

GeneLoc Exon Structure for
PTPN20CP
ECgene alternative splicing isoforms for
PTPN20CP

Expression for PTPN20CP Gene

mRNA expression in normal human tissues for PTPN20CP Gene

mRNA differential expression in normal tissues according to GTEx for PTPN20CP Gene

This gene is overexpressed in Testis (x7.3).

NURSA nuclear receptor signaling pathways regulating expression of PTPN20CP Gene:

PTPN20CP
genes like me logo Genes that share expression patterns with PTPN20CP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for PTPN20CP Gene

Orthologs for PTPN20CP Gene

Evolution for PTPN20CP Gene

ENSEMBL:
Gene Tree for PTPN20CP (if available)
TreeFam:
Gene Tree for PTPN20CP (if available)

No data available for Orthologs for PTPN20CP Gene

Paralogs for PTPN20CP Gene

No data available for Paralogs for PTPN20CP Gene

Variants for PTPN20CP Gene

Relevant External Links for PTPN20CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTPN20CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PTPN20CP Gene

Disorders for PTPN20CP Gene

No disorders were found for PTPN20CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PTPN20CP Gene

Publications for PTPN20CP Gene

No publications were found for PTPN20CP Gene.

Products for PTPN20CP Gene

Sources for PTPN20CP Gene

Content
Loading form....