Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PTOV1-AS2 Gene

Subcategory (RNA class) for PTOV1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PTOV1-AS2 Gene

  • PTOV1 Antisense RNA 2 2 3 5

External Ids for PTOV1-AS2 Gene

Summaries for PTOV1-AS2 Gene

GeneCards Summary for PTOV1-AS2 Gene

PTOV1-AS2 (PTOV1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PTOV1-AS2 Gene

Genomics for PTOV1-AS2 Gene

Regulatory Elements for PTOV1-AS2 Gene

Enhancers for PTOV1-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G049857 1.4 FANTOM5 ENCODE 28.1 -1.4 -1435 6.7 HDGF PKNOX1 ARNT AGO1 ZFP64 ZNF2 ZNF302 PAF1 SP3 TAF15 PRR12 PTOV1-AS2 ENSG00000268047 PIH1D1 SNORD35A DKKL1 SNORD35B PNKP FUZ RPS11
GH19G049874 1.4 ENCODE dbSUPER 22.4 -17.4 -17445 5.2 MLX CREB3L1 AGO1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 PNKP AKT1S1 PTOV1-AS2 NUP62 POLD1 SNORD35A ALDH16A1 SNORD35B PRR12 RPS11
GH19G050022 1.2 ENCODE 25.6 -165.5 -165533 4.5 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC SIGLEC16 POLD1 NUP62 SNORD35A PTOV1-AS2 PRR12 ALDH16A1 SNORD35B PNKP VRK3
GH19G049632 1.2 Ensembl dbSUPER 25.6 +228.1 228089 0.4 ATF1 AGO1 ZNF133 GLI4 ZNF2 GLIS2 ZNF302 KLF7 YY2 ZSCAN16 PRR12 NUP62 POLD1 PTOV1-AS2 PNKP SNORD35A ALDH16A1 SNORD35B SEC1P RPS11
GH19G048953 1.4 ENCODE dbSUPER 20.7 +904.0 904002 2.7 HDGF PKNOX1 MLX CREB3L1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 PRR12 PIH1D1 GRWD1 SNORD35A PTOV1-AS2 KDELR1 SNORD35B CYTH2 RPS11 NUP62
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PTOV1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for PTOV1-AS2 Gene

Chromosome:
19
Start:
49,856,465 bp from pter
End:
49,859,289 bp from pter
Size:
2,825 bases
Orientation:
Minus strand

Genomic View for PTOV1-AS2 Gene

Genes around PTOV1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PTOV1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTOV1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTOV1-AS2 Gene

Proteins for PTOV1-AS2 Gene

Post-translational modifications for PTOV1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTOV1-AS2 Gene

Domains & Families for PTOV1-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PTOV1-AS2 Gene

Function for PTOV1-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTOV1-AS2 Gene

Localization for PTOV1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PTOV1-AS2 Gene

Pathways & Interactions for PTOV1-AS2 Gene

SuperPathways for PTOV1-AS2 Gene

No Data Available

Interacting Proteins for PTOV1-AS2 Gene

Gene Ontology (GO) - Biological Process for PTOV1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PTOV1-AS2 Gene

Drugs & Compounds for PTOV1-AS2 Gene

No Compound Related Data Available

Transcripts for PTOV1-AS2 Gene

mRNA/cDNA for PTOV1-AS2 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PTOV1-AS2 Gene

No ASD Table

Relevant External Links for PTOV1-AS2 Gene

GeneLoc Exon Structure for
PTOV1-AS2
ECgene alternative splicing isoforms for
PTOV1-AS2

Expression for PTOV1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PTOV1-AS2 Gene

genes like me logo Genes that share expression patterns with PTOV1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTOV1-AS2 Gene

Orthologs for PTOV1-AS2 Gene

Evolution for PTOV1-AS2 Gene

ENSEMBL:
Gene Tree for PTOV1-AS2 (if available)
TreeFam:
Gene Tree for PTOV1-AS2 (if available)

No data available for Orthologs for PTOV1-AS2 Gene

Paralogs for PTOV1-AS2 Gene

No data available for Paralogs for PTOV1-AS2 Gene

Variants for PTOV1-AS2 Gene

Sequence variations from dbSNP and Humsavar for PTOV1-AS2 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs886037745 Pathogenic 49,861,264(-) CTGCC(-/TGTACTGC)AGTTC upstream-variant-2KB, reference, frameshift-variant
rs755715265 Likely benign 49,857,051(+) GAAGA(A/T)GATCT nc-transcript-variant, reference, missense
rs1050332 Uncertain significance 49,861,233(-) AGCTC(C/T)CCTCC downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs201872477 Uncertain significance 49,861,227(+) TATTG(A/G/T)GGAGG downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs760131892 Uncertain significance 49,861,269(+) TGGCA(A/C/G)TACAG upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for PTOV1-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv53n68 CNV loss 17160897
dgv54n68 CNV loss 17160897
nsv1140251 OTHER inversion 24896259
nsv470150 CNV gain 18288195
nsv524068 CNV loss 19592680
nsv524534 CNV loss 19592680
nsv526372 CNV loss 19592680
nsv953600 CNV deletion 24416366
nsv9739 CNV gain+loss 18304495

Relevant External Links for PTOV1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTOV1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PTOV1-AS2 Gene

Disorders for PTOV1-AS2 Gene

Relevant External Links for PTOV1-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PTOV1-AS2

No disorders were found for PTOV1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PTOV1-AS2 Gene

Publications for PTOV1-AS2 Gene

No publications were found for PTOV1-AS2 Gene.

Products for PTOV1-AS2 Gene

Sources for PTOV1-AS2 Gene

Content
Loading form....