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Aliases & Descriptions for PTN
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| HARP 2 | | HB-GAM 3 | | HBBM 3 | | HBGF-8 3 | | HBGF8 1, 2 | | HBNF 1, 2 | | HBNF-1 3 | | HBNF1 3 | | NEGF1 2, 3, 5 | | OSF-1 3 | | pleiotrophin 2 |
| | | Descriptions |
|---|
| Heparin-binding brain mitogen 3 | | Heparin-binding growth factor 8 3 | | Heparin-binding growth-associated molecule 2, 3 | | Heparin-binding neurite outgrowth-promoting factor 1 3 | | Osteoblast-specific factor 1 3 | | heparin affin regulatory protein 2 | | heparin binding growth factor 8 2 | | neurite growth-promoting factor 1 1, 2 | pleiotrophin (heparin binding growth factor 8, neurite growth-promoting factor 1) 2 |
|
| | Search outside databases for aliases for PTN genePrevious GC identifers: GC07M135254 GC07M136314 GC07M136328 GC07M136369 |
Summaries for PTN(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: PTN_HUMAN, P21246Function: Heparin binding mitogenic protein. Has neurite extension activityGene Wiki entry for PTN (Pleiotrophin) |
Genomic Location for PTN
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the PTN gene 
Entrez Gene cytogenetic band: 7q33-q34 Ensembl cytogenetic band: 7q33 HGNC cytogenetic band: 7q33PTN Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07M136562:
(about GC identifiers)
Start:
|
136,562,628 bp from pter |
End:
|
136,679,086 bp from pter |
Size:
|
116,459 bases |
Orientation:
|
minus strand |
1 alternative location:
| Chr7-,CRA_TCAG 136,256,123-136,372,579 |
RefSeq DNA sequence:- NC_000007.12 NT_007933.14 NT_079596.2
| Proteins for PTN
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: PTN_HUMAN, P21246 (See
protein sequence)Recommended Name: Pleiotrophin precursor Size: 168 amino acids; 18942 Da
Subcellular location: Secreted
Secondary accessions: Q5U0B0 Q6ICQ5 Q9UCC6REFSEQ proteins: NP_002816.1
ENSEMBL proteins: ENSP00000376798 ENSP00000341170
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for PTN: Assays for PTN: | Protein
Domains/ Families for PTN(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P21246
ProtoNet protein and cluster: P21246 1 Blocks protein family: IPB000762 PTN/MK heparin-binding protein
UniProtKB/Swiss-Prot: PTN_HUMAN, P21246Similarity: Belongs to the pleiotrophin family | Gene Function for PTN
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002825
Applied Biosystems Silencer® siRNAs for PTN
Sigma-Aldrich siRNA and siRNA Panels for PTN  Sigma-Aldrich shRNA Panels and shRNA for PTN  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002825                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002825                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002825 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002825
UniProtKB/Swiss-Prot: PTN_HUMAN, P21246Function: Heparin binding mitogenic protein. Has neurite extension activityInduction: By heparin and retinoic acidGenatlas biochemistry entry for PTN:pleiotrophin,18.9kDa,widely expressed and developmentally regulated,heparin-binding cytokine family,inducing neurite extension outgrow in osteoblasts and brain cells and in diverse other activities8 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Ptn):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for PTN
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for PTN 
5/99 Interacting proteins for PTN (ENSP000003411703 P212462) via UniProtKB, MINT, and/or STRING (see all 99
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for PTN(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for PTN 10/12 Novoseek chemical compound relationships for PTN gene (see all 12
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| chondroitin sulfate |
59.67 |
27 |
16373346 (7), 12684467 (2), 16175577 (2), 17680989 (1) (see all 8) |
| tyrosine |
59.06 |
94 |
10706604 (5), 15925565 (4), 9235965 (3), 18474614 (3) (see all 37) |
| neurocan |
52.76 |
4 |
9507007 (3), 11766883 (1) |
| heparan sulfate |
42.32 |
9 |
10075664 (2), 15203110 (1), 16156786 (1), 16155004 (1) (see all 5) |
| wortmannin |
24.36 |
3 |
9235965 (1), 11241349 (1), 17960557 (1) |
| matrigel |
16.94 |
3 |
11241349 (1), 15001987 (1), 15797857 (1) |
| glycosaminoglycan |
15.68 |
2 |
15203110 (1) |
| thymidine |
11.21 |
4 |
11936877 (1), 9389569 (1), 9041202 (1), 12421346 (1) |
| oligonucleotide |
9.14 |
1 |
1407714 (1) |
| nitric oxide |
0.00 |
20 |
19058221 (4), 11241349 (2), 17960557 (1), 17614755 (1) (see all 5) |
About this table
|
Transcripts for PTN(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002825
Sigma-Aldrich siRNA and siRNA Panels for PTN  Sigma-Aldrich shRNA Panels and shRNA for PTN  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002825 REFSEQ mRNAs for PTN gene: NM_002825.5
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002825               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002825                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002825                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002825  Additional cDNA sequence: AK290488.1 AK297725.1 AK313424.1 BC005916.1 BT019692.1 CR450338.1 CR596476.1 CR609152.1 CR614046.1 CR619084.1 CR620419.1 CR624136.1 D90226.1 M57399.1 X52946.1 9 DOTS entries: DT.317555 DT.99936772 DT.92444840 DT.100796060 DT.100796063 DT.100796066 DT.92444835 DT.92444824 DT.92444844 24/268 AceView cDNA sequences (see all 268
):AI797499 AI419278 CK002913 H88349 BM968820 AW590267 CR609152 CR596476 AA318830 BQ302232 AI380075 CD672995 AA846221 BX463559 BM929772 AU120808 H87964 D90226 BC005916 BX444323 X52946 H88665 AW157101 BI759999
highest scoring ESTs for PTN:M57399 AA090718 AA090747 AA318827 AA318830 AA319095 AI338085 AI611319 AI797499 AI879135 Unigene Cluster for PTN: Pleiotrophin Hs.371249 [show with all ESTs]Unigene Representative Sequence: CR624136
GeneLoc Exon Structure
2 Ensembl transcripts including schematic representations: ENST00000393083
ENST00000348225
|
Expression for PTN
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| PTN expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for PTN
1 / 2 / 3 8 probe-sets matching PTN gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TCCTAGTTCA
SOURCE GeneReport for Unigene cluster: Hs.371249
Expression variation in blood from EXPOLDB for PTN UniProtKB/Swiss-Prot: PTN_HUMAN, P21246Tissue specificity: Osteoblast and brain |
Orthologs for PTN
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for PTN gene from 5/8 species (see all 8
)
About this table Species with no ortholog for PTN
ENSEMBL Gene Tree for PTN | Paralogs for PTN(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for PTN(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for PTN (up to first 250kb)
|
Disorders & Mutations for PTN
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 162095
10/36 Novoseek disease relationships for PTN gene (see all 36
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| glioblastoma |
63.80 |
39 |
15986444 (7), 14692702 (3), 15908427 (3), 15684595 (3) (see all 14) |
| benign meningioma |
44.77 |
2 |
1407714 (1), 15379633 (1) |
| tumors |
44.00 |
179 |
16554021 (5), 8063762 (4), 18156802 (4), 14504053 (3) (see all 55) |
| lymphoma |
38.92 |
19 |
12107166 (2), 11809760 (2), 15886198 (1), 15908427 (1) (see all 12) |
| glioma |
38.06 |
20 |
12421346 (7), 14692702 (1), 16923162 (1), 15684595 (1) (see all 9) |
| choriocarcinoma |
33.73 |
5 |
10962555 (2), 18221061 (1), 8962128 (1), 11016659 (1) |
| mammary tumor |
30.83 |
6 |
16507572 (1), 17578909 (1), 18156802 (1), 15379633 (1) (see all 5) |
| carcinoma embryonal |
28.39 |
2 |
1373617 (1) |
| cancer |
25.83 |
39 |
18221061 (3), 9776412 (2), 1464602 (2), 15542254 (2) (see all 17) |
| breast cancer |
24.27 |
58 |
17578909 (6), 7533562 (4), 9201975 (3), 17490616 (2) (see all 11) |
About this table
Human Genome Epidemiology Navigator: PTN (1 document)
|
Medical News for PTN(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for PTN (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/226 PubMed articles for PTN gene (see all 226
):- Cloning, nucleotide sequence, and chromosome localization of the human pleiotrophin gene. (PubMed id 1457401)1, 2, 3, 4 Milner P.G.... Kumar B.V. (1992)
- Cloning, characterization and developmental regulation of two members of a novel human gene family of neurite outgrowth-promoting proteins. (PubMed id 1768439)1, 2, 3, 4 Kretschmer P.J....Kovesdi I. (1991)
- Bone mass loss due to estrogen deficiency is compensated in transgenic mice overexpressing human osteoblast stimulating factor- 1. (PubMed id 9299545)1, 3, 4 Masuda H.... Hashimoto-Gotoh T. (1997)
- A heparin-binding growth factor secreted from breast cancer cells homologous to a developmentally regulated cytokine. (PubMed id 1733956)1, 3, 4 Wellsein A.... Lippman M.E. (1992)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Human chromosome 7: DNA sequence and biology. (PubMed id 12690205)3, 4 Scherer S.W....Tsui L.C. (2003)
- Genomic organization of the human HBNF gene and characterization of an HBNF variant protein as a splice mutant. (PubMed id 8484754)3, 4 Kretschmer P.J....Kovesdi I. (1993)
- Comparison of the disulfide bond arrangements of human recombinant and bovine brain heparin binding neurite-promoting factors. (PubMed id 8484780)3, 4 Hulmes J.D.... Bohlen P. (1993)
- Isolation of mouse and human cDNA clones encoding a protein expressed specifically in osteoblasts and brain tissues. (PubMed id 1701634)3, 4 Tezuka K.I....Hashimoto-Gotoh T. (1990)
- Cloning and expression of a developmentally regulated protein that induces mitogenic and neurite outgrowth activity. (PubMed id 2270483)3, 4 Li Y.-S.... Deuel T.F. (1990)
|
Search for PTN
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing PTN
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing PTN
(According to HUGE)
About This Section
| -- |
Specialized Databases showing PTN(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for PTN(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for PTN:

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Incremental update: 13 Oct 2009
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