PTK2B Gene
protein-coding GIFtS : 71
GCID: GC08 P027224
protein tyrosine kinase 2 beta (Previous names: protein tyrosine kinase 2 beta, PTK2B protein tyrosine... ) (Previous symbol: FAK2 )
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Aliasesfor PTK2B gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Protein Tyrosine Kinase 2 Beta 1 Focal Adhesion Kinase 22 3 FAK21 2 3 5 Proline-Rich Tyrosine Kinase 22 3 PYK21 2 3 5 Related Adhesion Focal Tyrosine Kinase2 3 CADTK1 2 3 CAK-Beta1 CAKB1 2 3 FADK 22 3 RAFTK1 2 3 EC 2.7.10.23 8 PTK1 2 FADK22 PTK2B Protein Tyrosine Kinase 2 Beta1 2 PKB2 Calcium-Dependent Tyrosine Kinase2 3 Protein Kinase B2 Calcium-Regulated Non-Receptor Proline-Rich Tyrosine Kinase2 3 Protein-Tyrosine Kinase 2-Beta2 Cell Adhesion Kinase Beta2 3 EC 2.7.108
Export aliases for PTK2B gene to outside databases Previous GC identifers: GC08P027003 GC08P027685 GC08P027190 GC08P025714
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Summariesfor PTK2B gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for PTK2B : This gene encodes a cytoplasmic protein tyrosine kinase which is involved in calcium-induced regulation of ion channels and activation of the map kinase signaling pathway. The encoded protein may represent an important signaling intermediate between neuropeptide-activated receptors or neurotransmitters that increase calcium flux and the downstream signals that regulate neuronal activity. The encoded protein undergoes rapid tyrosine phosphorylation and activation in response to increases in the intracellular calcium concentration, nicotinic acetylcholine receptor activation, membrane depolarization, or protein kinase C activation. This protein has been shown to bind CRK-associated substrate, nephrocystin, GTPase regulator associated with FAK, and the SH2 domain of GRB2. The encoded protein is a member of the FAK subfamily of protein tyrosine kinases but lacks significant sequence similarity to kinases from other subfamilies. Four transcript variants encoding two different isoforms have been found for this gene. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: FAK2_HUMAN, Q14289 Function : Non-receptor protein-tyrosine kinase that regulates reorganization of the actin cytoskeleton, cellpolarization, cell migration, adhesion, spreading and bone remodeling. Plays a role in the regulation of the humoral immune response, and is required for normal levels of marginal B-cells in the spleen and normal migration of splenic B-cells. Required for normal macrophage polarization and migration towards sites of inflammation. Regulates cytoskeleton rearrangement and cell spreading in T-cells, and contributes to the regulation of T-cell responses. Promotes osteoclastic bone resorption; this requires both PTK2B/PYK2 and SRC. May inhibit differentiation and activity of osteoprogenitor cells. Functions in signaling downstream of integrin and collagen receptors, immune receptors, G-protein coupled receptors (GPCR), cytokine, chemokine and growth factor receptors, and mediates responses to cellular stress. Forms multisubunit signaling complexes with SRC and SRC family members upon activation; this leads to the phosphorylation of additional tyrosine residues, creating binding sites for scaffold proteins, effectors and substrates. Regulates numerous signaling pathways. Promotes activation of phosphatidylinositol 3-kinase and of the AKT1 signaling cascade. Promotes activation of NOS3. Regulates production of the cellular messenger cGMP. Promotes activation of the MAP kinase signaling cascade, including activation of MAPK1/ERK2, MAPK3/ERK1 and MAPK8/JNK1. Promotes activation of Rho family GTPases, such as RHOA and RAC1. Recruits the ubiquitin ligase MDM2 to P53/TP53 in the nucleus, and thereby regulates P53/TP53 activity, P53/TP53 ubiquitination and proteasomal degradation. Acts as a scaffold, binding to both PDPK1 and SRC, thereby allowing SRC to phosphorylate PDPK1 at 'Tyr-9, 'Tyr-373', and 'Tyr-376'. Promotes phosphorylation of NMDA receptors by SRC family members, and thereby contributes to the regulation of NMDA receptor ion channel activity and intracellular Ca(2+) levels. May also regulate potassium ion transport by phosphorylation of potassium channel subunits. Phosphorylates SRC; this increases SRC kinase activity. Phosphorylates ASAP1, NPHP1, KCNA2 and SHC1. Promotes phosphorylation of ASAP2, RHOU and PXN; this requires both SRC and PTK2/PYK2 Gene Wiki entry for PTK2B
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Genomic Viewsfor PTK2B gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000008.10 NC_018919.1 NT_167187.1 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PTK2B gene promoter: STAT1 NRSF form 1 STAT3 Other transcription factors Search SABiosciences Chromatin IP Primers for PTK2B Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat PTK2B
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 8p21.1 Ensembl cytogenetic band: 8p21.2 HGNC cytogenetic band: 8p21.1 PTK2B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 8 GeneLoc Exon Structure
GeneLoc location for GC08P027224: view genomic region
(about GC identifiers )
Start:
27,168,999 bp from pter
End:
27,316,903 bp from pter
Size:
147,905 bases
Orientation:
plus strand
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Proteinsfor PTK2B gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: FAK2_HUMAN, Q14289 (See
protein sequence )Recommended Name: Protein-tyrosine kinase 2-beta Size : 1009 amino acids; 115875 Da
Subunit : Homodimer, or homooligomer. Interacts with SIRPA and SH2D3C. Interacts with ARHGAP10. Interacts with DLG4 (Bysimilarity). Interacts with NPHP1, ASAP1, ASAP2, ARHGAP26, SKAP2 and TGFB1I1. The Tyr-402 phosphorylated form interacts with SRC (via SH2 domain) and SRC family members. Forms a signaling complex with EPHA1, LCK and phosphatidylinositol 3-kinase; upon activation by EFNA1. Interacts with GRB2 (via SH2 domain). Interacts with P53/TP53 and MDM2. Interacts with MYLK. Interacts with BCAR1. Interacts with PDPK1. Interacts (hypophosphorylated) with PXN. Interacts with RB1CC1. Interacts with RHOU. Interacts with VAV1. Interacts with LPXN and PTPN12
Subcellular location : Cytoplasm. Cytoplasm, perinuclear region. Cell membrane; Peripheral membrane protein; Cytoplasmicside. Cell junction, focal adhesion. Cell projection, lamellipodium. Cytoplasm, cell cortex. Nucleus. Note=Interaction with NPHP1 induces the membrane-association of the kinase. Colocalizes with integrins at the cell periphery
Miscellaneous : Promotes bone resorption, and thus PTK2B/PYK2 inhibitors might be used to treat osteoporosis
6/18 PDB 3D structures from and Proteopedia for PTK2B (see all 18 ):2FO6 (3D)
  2LK4 (3D)
  3CC6 (3D)
  3ET7 (3D)
  3FZO (3D)
  3FZP (3D)
 
Secondary accessions : D3DST0 Q13475 Q14290 Q16709 Q6PID4Alternative splicing : 2 isoforms : Q14289-1 Q14289-2 Explore the universe of human proteins at neXtProt for PTK2B: NX_Q14289 Post-translational modifications:
Phosphorylated on tyrosine residues in response to various stimuli that elevate the intracellular calcium concentration; this activation is indirect and may be mediated by production of reactive oxygen species (ROS). Tyr-402 is the major autophosphorylation site, but other kinases can also phosphorylate Tyr-402. Autophosphorylation occurs in trans, i.e. one subunit of the dimeric receptor phosphorylates tyrosine residues on the other subunit. Phosphorylation at Tyr-402 promotes interaction with SRC and SRC family members, leading to phosphorylation at Tyr-579; Tyr-580 and Tyr-881. Phosphorylation at Tyr-881 is important for interaction with GRB2. Phosphorylated on tyrosine residues upon activation of FGR and PKC. Recruitment by NPHP1 to cell matrix adhesions initiates Tyr-402 phosphorylation. In monocytes, adherence to substrata is required for tyrosine phosphorylation and kinase activation. Angiotensin II, thapsigargin and L-alpha-lysophosphatidic acid (LPA) also induce autophosphorylation and increase kinase activity. Phosphorylation by MYLK promotes ITGB2 activation and is thus essential to trigger neutrophil transmigration during lung injury. Dephosphorylated by PTPN121
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q14289 4/6 DME Specific Peptides for PTK2B (Q14289 ) (see all 6 )PTK2B Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (4 alternative transcripts):
NP_004094.3 NP_775266.1 NP_775267.1 NP_775268.1 ENSEMBL proteins: ENSP00000380638 ENSP00000429694 ENSP00000430404 ENSP00000332816 ENSP00000428271 ENSP00000416174 ENSP00000427931 ENSP00000428837 ENSP00000380634 ENSP00000342242 ENSP00000440926 ENSP00000391995 Reactome Protein details: Q14289 Human Recombinant Protein Products: Gene Ontology (GO): 5/14 cellular component terms (GO ID links to tree view) (see all 14 ): About this table
PTK2B for ontologies About GeneDecksing PTK2B Antibody Products: Assay Products for PTK2B:
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Protein
Domains / Familiesfor PTK2B gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
PTK2B for domains About GeneDecksing 5/11 InterPro domains/families (see all 11 ):
Graphical View of Domain Structure for InterPro Entry Q14289 ProtoNet protein and cluster: Q14289
2 Blocks protein families : IPB005189 Focal adhesion targeting region IPB008266 Tyrosine protein kinase UniProtKB/Swiss-Prot: FAK2_HUMAN, Q14289 Similarity : Belongs to the protein kinase superfamily. Tyr protein kinase family. FAK subfamilySimilarity : Contains 1 FERM domainSimilarity : Contains 1 protein kinase domain
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Functionfor PTK2B gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: FAK2_HUMAN, Q14289 Function : Non-receptor protein-tyrosine kinase that regulates reorganization of the actin cytoskeleton, cellpolarization, cell migration, adhesion, spreading and bone remodeling. Plays a role in the regulation of the humoral immune response, and is required for normal levels of marginal B-cells in the spleen and normal migration of splenic B-cells. Required for normal macrophage polarization and migration towards sites of inflammation. Regulates cytoskeleton rearrangement and cell spreading in T-cells, and contributes to the regulation of T-cell responses. Promotes osteoclastic bone resorption; this requires both PTK2B/PYK2 and SRC. May inhibit differentiation and activity of osteoprogenitor cells. Functions in signaling downstream of integrin and collagen receptors, immune receptors, G-protein coupled receptors (GPCR), cytokine, chemokine and growth factor receptors, and mediates responses to cellular stress. Forms multisubunit signaling complexes with SRC and SRC family members upon activation; this leads to the phosphorylation of additional tyrosine residues, creating binding sites for scaffold proteins, effectors and substrates. Regulates numerous signaling pathways. Promotes activation of phosphatidylinositol 3-kinase and of the AKT1 signaling cascade. Promotes activation of NOS3. Regulates production of the cellular messenger cGMP. Promotes activation of the MAP kinase signaling cascade, including activation of MAPK1/ERK2, MAPK3/ERK1 and MAPK8/JNK1. Promotes activation of Rho family GTPases, such as RHOA and RAC1. Recruits the ubiquitin ligase MDM2 to P53/TP53 in the nucleus, and thereby regulates P53/TP53 activity, P53/TP53 ubiquitination and proteasomal degradation. Acts as a scaffold, binding to both PDPK1 and SRC, thereby allowing SRC to phosphorylate PDPK1 at 'Tyr-9, 'Tyr-373', and 'Tyr-376'. Promotes phosphorylation of NMDA receptors by SRC family members, and thereby contributes to the regulation of NMDA receptor ion channel activity and intracellular Ca(2+) levels. May also regulate potassium ion transport by phosphorylation of potassium channel subunits. Phosphorylates SRC; this increases SRC kinase activity. Phosphorylates ASAP1, NPHP1, KCNA2 and SHC1. Promotes phosphorylation of ASAP2, RHOU and PXN; this requires both SRC and PTK2/PYK2 Catalytic activity : ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphateEnzyme regulation : Activated in response to stimuli that lead to increased intracellular Ca(2+) levels; this activationis indirect and may be mediated by calcium-mediated production of reactive oxygen species (ROS). Activated by autophosphorylation at Tyr-402; this creates a binding site for SRC family kinases and leads to phosphorylation at additional tyrosine residues. Phosphorylation at Tyr-402, Tyr-579 and Tyr-580 is required for optimal kinase activity. Inhibited by PF-562,271, BIRB796, PF-4618433 and by PF-431396, PF-2318841 and their derivatives. Inhibited by sulfoximine-substituted trifluoromethylpyrimidines. Inhibited by 4-amino and 5-aryl substituted pyridinone compounds
Genatlas biochemistry entry for PTK2B : focal adhesion kinase 2 Enzyme Numbers (IUBMB): EC 2.7.10.2 1 2 EC 2.7.10 2 Inhib. RNA Products: EMD Millipore RNAi Products for the Analysis of PTK2B Gene knock-down OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for PTK2B (see all 7 ) OriGene shRNA RFP: PTK2B OriGene siRNA: PTK2B QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat PTK2B
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PTK2B (see all 8 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PTK2B (see all 6 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 4 ): PTK2B (NM_173174 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PTK2B Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PTK2B
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PTK2B
Gene Ontology (GO): 5/8 molecular function terms (GO ID links to tree view) (see all 8 ): About this table
PTK2B for ontologies About GeneDecksing 5 GenomeRNAi human phenotypes for PTK2B :Animal Models: Mouse knock-outs for PTK2B: Ptk2b tm1Okig Ptk2b tm1Schl 5 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Ptk2b) :
PTK2B for phenotypes About GeneDecksing
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Pathways & Interactionsfor PTK2B gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/72 super-pathways (see all 72 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Development Angiotensin activation of ERK 2 Rho Family GTPases 3 Translation_Translation regulation by Alpha-1 adrenergic receptors 4 Development_Endothelin-1/EDNRA transactivation of EGFR 5 Development_A3 receptor signaling
Pathway sources See GeneCards unified pathways Show all pathways 5/18 EMD Millipore Pathways for PTK2B (see all 18 )5/44 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for PTK2B (see all 44 )2
Cell Signaling Technology (CST) Pathways for PTK2B 5/18 GeneGo (Thomson Reuters) Pathways for PTK2B (see all 18 )5/20 BioSystems Pathways for PTK2B (see all 20 ) 5/7
Reactome Pathways for PTK2B (see all 7 )5
Kegg Pathways (Kegg details for PTK2B) :
PTK2B for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for PTK2B STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/127 Interacting proteins for PTK2B (Q14289 1 , 2 , 3 ENSP00000332816 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 127 )Interactant Interaction Details GeneCard External ID(s) FYN P06241 2 , 3 , ENSP00000357656 4 MINT-8037532 MINT-8037517 I2D:
score=4 STRING: ENSP00000357656 MAP3K4 Q9Y6R4 2 , 3 , ENSP00000375986 4 MINT-51385 MINT-51384 I2D:
score=3 STRING: ENSP00000375986 MATK P42679 2 , 3 MINT-8037577 MINT-8037562 I2D:
score=3 PDCD6IP Q8WUM4 2 , 3 , ENSP00000307387 4 MINT-68515 I2D:
score=2 STRING: ENSP00000307387 RHOU Q7L0Q8 1 , 3 , ENSP00000355652 4 EBI-2211226,EBI-1638043 I2D:
score=1 STRING: ENSP00000355652
About this table Gene Ontology (GO): 5/84 biological process terms (GO ID links to tree view) (see all 84 ): About this table
PTK2B for ontologies About GeneDecksing
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Drugs & Compoundsfor PTK2B gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
PTK2B for compounds About GeneDecksing Browse Tocris compounds for PTK2B 10/13 HMDB Compounds for PTK2B (see all 13 ) About this table 3 DrugBank Compounds for PTK2B About this table 10/145 Novoseek chemical compound relationships for PTK2B gene (see all 145 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine
92.8
1858
10037772 (9), 10749687 (9), 11739373 (6), 8695788 (6) (see all 99 )
herbimycin a
90.3
100
9028864 (2), 7691610 (2), 16696126 (2), 8392438 (2) (see all 83 )
genistein
88.9
249
9667736 (4), 8442770 (3), 8891338 (3), 18718176 (2) (see all 99 )
erbstatin
78.2
16
14515350 (1), 9248222 (1), 7852849 (1), 10773618 (1) (see all 9 )
phosphotyrosine
73.1
17
11208605 (1), 8920763 (1), 10773618 (1), 18503146 (1) (see all 15 )
beta-hydroxyisovalerylshikonin
70
16
14551501 (6), 12592388 (2), 12716473 (2)
ag 1478
68.3
4
9722539 (1), 18667434 (1), 18182168 (1), 19946718 (1)
ag957
68.3
3
9823945 (1), 12380934 (1)
ag 213
68.2
2
1375248 (1)
ag 18
67.1
3
12634073 (1), 19251944 (1), 11467832 (1)
Search CenterWatch for drugs/clinical trials and news about PTK2B / FAK2
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Transcriptsfor PTK2B gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for PTK2B gene (4 alternative transcripts): NM_004103.4 NM_173174.2 NM_173175.2 NM_173176.2 Unigene Cluster for PTK2B:
PTK2B protein tyrosine kinase 2 beta Hs.491322 [show with all ESTs ] Unigene Representative Sequence: NM_173174 18/19 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 19 ): ENST00000397501 (uc003xfn.2 ) ENST00000519650 ENST00000522338 ENST00000521164 ENST00000346049 (uc003xfp.2 ) ENST00000522517 ENST00000412793 ENST00000496920 ENST00000517339 (uc010luq.1 ) ENST00000521000 ENST00000519512 ENST00000397497 (uc003xfr.1 uc003xfs.1 )ENST00000461615 ENST00000495097 ENST00000482543 ENST00000522245 ENST00000338238 ENST00000544172 (uc022ate.1 ) Inhib. RNA Products: EMD Millipore RNAi Products for the Analysis of PTK2B Gene knock-down OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for PTK2B (see all 7 ) OriGene shRNA RFP: PTK2B OriGene siRNA: PTK2B QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat PTK2B
Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PTK2B (see all 8 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PTK2B (see all 6 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 4 ): PTK2B (NM_173174 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PTK2B Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PTK2B
Additional cDNA sequence: AB209085.1 AK128371.1 AY429564.1 BC036651.2 BC042599.2 D45853.1 L49207.1 U33284.1 U43522.1
14 DOTS entries : DT.95360491 DT.95226435
DT.100816481 DT.100035969 DT.101971785 DT.100816479 DT.40227837 DT.120647184 DT.120647207 DT.91747726 DT.92005520 DT.97854200 DT.120647181 DT.92043930 24/232 AceView cDNA sequences (see all 232 ):
AA831122 AA904030 AI913993 BM980790 CA449933 AI590090 NM_173176 NM_173174 CD369939 AA464439 AA477775 R85257 CB156700 CB850679 CR613708 AA814433 AA938078 BF932497 NM_004103 AA507650 BM712234 CA446390 AA826177 NM_173175 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for PTK2B (see all 10 ) About this scheme ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b · 12c ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ SP1 :   -   -   -     -   -     -                   -     -               SP2 :           -   -     -                   -     -               SP3 :                                                     SP4 :                 -                                     SP5 :     -   -     -   -     -                                    
ExUns: 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28 ^ 29a · 29b ^ 30 ^ 31 ^ 32 ^ 33 ^ 34 ^ 35 SP1 :                                   SP2 :                                   SP3 :                 -                   SP4 :                                   SP5 :                                  
ECgene alternative splicing isoforms for PTK2B
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Expression for PTK2B gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section PTK2B expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TGTTTGCATA
About this image PTK2B expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See PTK2B Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for PTK2B SOURCE GeneReport for Unigene cluster: Hs.491322 UniProtKB/Swiss-Prot: FAK2_HUMAN, Q14289 Tissue specificity : Most abundant in the brain, with highest levels in amygdala and hippocampus. Low levels in kidney(at protein level). Also expressed in spleen and lymphocytes SABiosciences Expression via Pathway-Focused PCR Arrays including PTK2B : Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PTK2BBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat PTK2B QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PTK2B QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PTK2B In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PTK2B
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Orthologsfor PTK2B gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for PTK2B gene from 4/14 species (see all 14 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
PTK2B1
PTK2B protein tyrosine kinase 2 beta
79(n) 80.16(a)
 
421998 XM_003641070.1 XP_003641118.1
lizard (Anolis carolinensis)
Reptilia
PTK2B6
--
73(a)
1 ↔ 1
GL343696.1(210677-265559)
zebrafish (Danio rerio)
Actinopterygii
AJ490510.22
--
73.7(n)
 
245950 AJ490510.2
worm (Caenorhabditis elegans)
Secernentea
kin-323
protein kinase
30(a) (best of 2)
 
--
ENSEMBL Gene Tree for PTK2B (if available)TreeFam Gene Tree for PTK2B (if available)
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Paralogsfor PTK2B gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for PTK2B gene SYK 2 TNK1 2 JAK2 2 JAK3 2 TNK2 2 TYK2 2 ERBB4 2 JAK1 2 ERBB3 2 PTK2 2 ERBB2 2 ZAP70 2 EGFR 2 18/20 SIMAP similar genes for PTK2B using alignment to 7 protein entries: FAK2_HUMAN (see all proteins )
(see all similar genes ):ABL1 EPHA2 FES tec PTK2 BTK kinase deficient isoform 6 DKFZp666O0110 HCK DKFZp686M05208 DKFZp434L0319 ERBB4 CSK FGR BTK kinase deficient isoform 2 FGFR1 MET FLT1 NEK6
PTK2B for paralogs About GeneDecksing
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Genomic Variantsfor PTK2B gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 8 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for PTK2B (27168999 - 27316903 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for PTK2B 2 Indels : 10910 100304
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing PTK2B
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Disorders
/ Diseasesfor PTK2B gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
PTK2B for disorders About GeneDecksing
OMIM gene information: 601212
OMIM disorders : --UniProtKB/Swiss-Prot: FAK2_HUMAN, Q14289
Note=Aberrant PTK2B/PYK2 expression may play a role in cancer cell proliferation, migration and invasion, in tumor formation and metastasis. Elevated PTK2B/PYK2 expression is seen in gliomas, hepatocellular carcinoma, lung cancer and breast cancer 20/84 diseases for PTK2B (see all 84 ): About MalaCards dna topoisomerase i traumatic brain injury transient cerebral ischemia brain injury crescentic glomerulonephritis myeloproliferative disorder laryngeal squamous cell carcinoma insulin resistance adenoid cystic carcinoma malignant glioma retinal degeneration systemic lupus erythematosus cystic fibrosis acute promyelocytic leukemia squamous cell carcinoma myeloid leukemia lupus erythematosus gangliosidosis rheumatoid arthritis chronic myeloid leukemia 1 disease from the University of Copenhagen DISEASES database for PTK2B :Gangliosidosis 10/68 Novoseek disease relationships for PTK2B gene (see all 68 ) About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
myeloid leukemia chronic
45.6
7
9566916 (1), 17605888 (1), 12488463 (1), 15087031 (1) (see all 7 )
hypo-osmolality
35.8
5
10811968 (3), 10381589 (2)
leukemia
27
14
9569020 (2), 7488237 (1), 11114726 (1), 14636885 (1) (see all 12 )
tumors
25.2
61
7475883 (4), 8442941 (4), 8179861 (3), 20074345 (3) (see all 34 )
sarcoma avian
24.6
3
8278385 (1), 1309253 (1)
blast crisis
23.2
1
15087031 (1)
glioma
22.2
36
16962067 (4), 15499613 (3), 15967096 (3), 12900387 (2) (see all 14 )
necrosis
14.7
12
12515814 (2), 8778024 (1), 10521452 (1), 8739563 (1) (see all 9 )
cholera
11
1
9028864 (1)
breast cancer
10.6
47
18832579 (5), 10713673 (3), 1380891 (3), 14654952 (3) (see all 17 )
Human Genome Epidemiology (HuGE) Navigator: PTK2B (12 documents) Export disorders for PTK2B gene to outside databases
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Publicationsfor PTK2B gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for PTK2B gene, integrated from 9 sources (see all 1039 ): (articles sorted by number of sources associating them with PTK2B) Utopia : connect your pdf to the dynamic world of online information
Identification and characterization of a novel related adhesion focal tyrosine kinase (RAFTK) from megakaryocytes and brain. (PubMed id 7499242) 1 , 2 , 3, 9 Avraham S.... Avraham H. (1995) Protein tyrosine kinase PYK2 involved in Ca(2+)-induced regulation of ion channel and MAP kinase functions. (PubMed id 7544443) 1 , 2 , 3, 9 Lev S.... Schlessinger J. (1995) Pyk2 inhibition of p53 as an adaptive and intrinsic m echanism facilitating cell proliferation and survival. (PubMed id 19880522) 1 , 2 , 9 Lim S.T....Schlaepfer D.D. (2010) Proline-rich tyrosine kinase 2 (Pyk2) promotes proliferation and invasiveness of hepatocellular carcinoma cells through c-Src/ERK activation. (PubMed id 18765415) 1 , 2 , 9 Sun C.K....Fan S.T. (2008) Pyk2 mediates endothelin-1 signaling via p130Cas/BCAR3 cascade and regulates human glomerular mesangial cell adhesion and spreading. (PubMed id 19086031) 1 , 2 , 9 Rufanova V.A....Sorokin A. (2009) A calcium-dependent tyrosine kinase splice variant in human monocytes. Activation by a two-stage process involving adherence and a subsequent intracellular signal. (PubMed id 9545257) 1 , 2 , 9 Li X.... Earp H.S. (1998) T cell receptor activation leads to two distinct phas es of Pyk2 activation and actin cytoskeletal rearrangement in human T cells. (PubMed id 20381867) 1 , 2 , 9 Collins M....Houtman J.C. (2010) Nephrocystin interacts with Pyk2, p130(Cas), and tensin and triggers phosphorylation of Pyk2. (PubMed id 11493697) 1 , 2 , 9 Benzing T.... Walz G. (2001) A Pyk2-Vav1 complex is recruited to beta3-adhesion sites to initiate Rho activation. (PubMed id 19207108) 1 , 2 , 9 Gao C. and Blystone S.D. (2009) Interaction of Pyk2 and PTP-PEST with leupaxin in prostate cancer cells. (PubMed id 17329398) 1 , 2 , 9 Sahu S.N....Gupta A. (2007)
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External Searches for PTK2B gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PTK2B gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing PTK2B gene
(According to HUGE )
About This Section --
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Specialized Databases showing PTK2B gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for PTK2B gene: Search GeneIP for patents involving PTK2B GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PTK2B gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for PTK2B OriGene shRNA RFP for PTK2B OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for PTK2B OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PTK2B OriGene Protein Over-expression Lysate for PTK2B Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for PTK2B OriGene 3'-UTR Clone for PTK2B OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PTK2B OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PTK2B Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for PTK2B OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for PTK2B OriGene Custom Protein Services for PTK2B OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat PTK2B QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing PTK2B QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat PTK2B QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat PTK2B QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PTK2B QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PTK2B
Antibodies & Assays for PTK2B   (Pyk2)
Search Tocris compounds for PTK2B
Recombinant Protein for PTK2B
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PTK2B
ThermoFisher Antibodies for PTK2B
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat PTK2B
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