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Aliases & Descriptions for PTGIS gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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User Feedback Aliases & Descriptions prostaglandin I2 (prostacyclin) synthase1 2 cytochrome P450, family 8, subfamily A, polypeptide 12 CYP8A11 2 3 5 prostacyclin synthase2 PGIS1 2 5 PTGI2 CYP82 3 5 MGC1268602 Prostaglandin I2 synthase2 3 EC 5.3.99.43 MGC1268582
Search outside databases for aliases for PTGIS genePrevious GC identifers: GC20M047848 GC20M048758 GC20M048805 GC20M047553
Summaries for PTGIS gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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User Feedback Entrez Gene summary for PTGIS : This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. However, this protein is considered a member of the cytochrome P450 superfamily on the basis of sequence similarity rather than functional similarity. This endoplasmic reticulum membrane protein catalyzes the conversion of prostglandin H2 to prostacyclin (prostaglandin I2), a potent vasodilator and inhibitor of platelet aggregation. An imbalance of prostacyclin and its physiological antagonist thromboxane A2 contribute to the development of myocardial infarction, stroke, and atherosclerosis. (provided by RefSeq) UniProtKB/Swiss-Prot: PTGIS_HUMAN, Q16647 Function : Catalyzes the isomerization of prostaglandin H2 to prostacyclin (= prostaglandin I2)
Genomic Views for PTGIS gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl (release 56) ,
Regulatory elements and Epigenetics data according to
SABiosciences )About This Section
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User Feedback Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PTGIS gene upstream (promoter) region :AP-1 c-Fos c-Jun NF-kappaB1 p53 AREB6 NF-kappaB POU3F1 RP58 Tal-1beta Epigenetics: SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for PTGIS: MePH28261-1A Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 20q13.13 Ensembl cytogenetic band: 20q13.13 HGNC cytogenetic band: 20q13 PTGIS Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 20 GeneLoc Exon Structure
GeneLoc location for GC20M048120: view genomic region
(about GC identifiers )
Start:
48,120,411 bp from pter
End:
48,184,707 bp from pter
Size:
64,297 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000020.10 NT_011362.10 Proteins for PTGIS gene
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Sino Biological ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 May 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
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User Feedback UniProtKB/Swiss-Prot: PTGIS_HUMAN, Q16647 (See
protein sequence )Recommended Name: Prostacyclin synthase Size : 500 amino acids; 57104 Da
Cofactor : Heme group (By similarity)
Subcellular location : Endoplasmic reticulum membrane; Single-pass membrane protein
PDB structure from and Proteopedia : 2IAG (3D)
 3B6H (3D)
 
Secondary accessions : Q3MII8 Q9HAX2 Q9HAX3 Q9HAX4
REFSEQ proteins: NP_000952.1 ENSEMBL proteins: ENSP00000244043 Human Recombinant Proteins 5 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
PTGIS for ontologies About GeneDecksing Antibodies for PTGIS: Assays for PTGIS:
Protein
Domains/ Families for PTGIS gene(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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PTGIS for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q16647 ProtoNet protein and cluster: Q16647
1 Blocks protein family : IPB002403 E-class P450 group IV signature UniProtKB/Swiss-Prot: PTGIS_HUMAN, Q16647 Similarity : Belongs to the cytochrome P450 family
Gene Function for PTGIS gene
(According to MGI May 08 2010, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Millipore ,
Abnova ,
siRNAs from
Applied Biosystems ,
Sigma-Aldrich , Clones from
Millipore ,
Sigma-Aldrich ,
OriGene ,
Sino Biological ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene .)
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User Feedback UniProtKB/Swiss-Prot: PTGIS_HUMAN, Q16647 Function : Catalyzes the isomerization of prostaglandin H2 to prostacyclin (= prostaglandin I2)Catalytic activity : (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15-hydroxyprosta-5,13-dienoate =(5Z,13E)-(15S)-6,9-alpha-epoxy-11-alpha,15-dihydroxyprosta-5,13-dienoate Enzyme Number (IUBMB): EC 5.3.99.4
Genatlas biochemistry entry for PTGIS :prostaglandin 12 synthase 5/7 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 7
):
About this table
PTGIS for ontologies About GeneDecksing Animal Models: 3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ptgis) :
PTGIS for phenotypes About GeneDecksing Pathways & Interactions for PTGIS gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
Applied Biosystems GeneAssist ,
KEGG
and/or UniProtKB ,
(map by GeneGo ),
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene) .
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PTGIS for pathways About GeneDecksing 3 Millipore Pathways for PTGIS 2 Sigma-Aldrich "Your Favorite Gene" Pathways for PTGIS (Your Favorite Gene powered by Ingenuity) 2 Kegg Pathways (Kegg details for PTGIS) : Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for PTGIS 5/7 Interacting proteins for PTGIS (ENSP00000244043 3 ) via UniProtKB, MINT, and/or STRING (see all 7
) About this table 3 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0001516 prostaglandin biosynthetic process
IEA -- GO:0006629 lipid metabolic process
NAS 8812456 GO:0006633 fatty acid biosynthetic process
IEA --
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PTGIS for ontologies About GeneDecksing
Drugs & Compounds for PTGIS gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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PTGIS for compounds About GeneDecksing
Enzo Life Sciences drugs & compounds for PTGIS
Browse Tocris compounds for PTGIS 10/114 Novoseek chemical compound relationships for PTGIS gene (see all 114
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
prostacyclin
100.00
568
10076157 (12), 12019369 (8), 8051072 (7), 3917545 (6) (see all 100 )
prostaglandin h2
57.35
30
18590695 (3), 18032380 (2), 16406803 (2), 11006279 (2) (see all 25 )
thromboxane
42.78
34
19735918 (2), 17189713 (2), 9682267 (1), 9202154 (1) (see all 32 )
peroxynitrite
35.78
29
9820830 (4), 9278151 (3), 10335439 (3), 17164139 (2) (see all 20 )
thromboxane a2
32.38
30
8238203 (3), 19735918 (3), 9367522 (2), 12738712 (2) (see all 24 )
monocrotaline
20.27
14
15684702 (5), 11034952 (5), 18612919 (2), 17635855 (1) (see all 5 )
6-ketoprostaglandin f1alpha
18.48
13
9933282 (2), 2817083 (2), 8263161 (1), 8027246 (1) (see all 11 )
prostaglandin
14.47
23
2107185 (2), 10809766 (2), 10334892 (2), 6992239 (1) (see all 20 )
tranylcypromine
13.99
9
2514665 (2), 8307867 (1), 7556492 (1), 6793337 (1) (see all 8 )
onoo
13.75
9
17164139 (5), 16186418 (3), 15370068 (1)
About this table
Transcripts for PTGIS gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 223 Homo sapiens; Apr 2 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Primers from
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SABiosciences , Expression Assays from Applied Biosystems )About This Section
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User Feedback Assays: Applied Biosystems TaqMan® Gene Expression Assays: NM_000961 Clones: Origene GFP tagged cDNA clones in CMV expression vector: PTGIS Origene Myc/DDK tagged cDNA clones in CMV expression vector: PTGIS Origene untagged cDNA clones in CMV expression vector: PTGIS
Primers: Origene genome-wide validated SYBR primer pairs: PTGIS SABiosciences RT2 qPCR Primer Assay for PTGIS: PPH02582A
REFSEQ mRNAs for PTGIS gene: NM_000961.3
Additional cDNA sequence: AF297048.1 AF297049.1 AF297050.1 AF297051.1 AF297052.1 AK055640.1 BC101809.1 BC101811.1 BC143381.1 D38145.1
2 DOTS entries : DT.306642 DT.312136
24/65 AceView cDNA sequences (see all 65
):
AA126676 CD014051 NM_000961 BG747647 AA112885 BI913761 AI969383 BE466814 BP374626 D38145 CA415428 AA150210 AF297048 AA083871 AF297052 AF297051 AF297049 AF297050 CD014146 AL700270 F04077 BE674368 AK055640 AI239580
highest scoring ESTs for PTGIS :D38145 AF297048 AF297049 AF297050 AF297051 AF297052 AA026093 AA362696 AI677655 AI969383 Unigene Cluster for PTGIS:
Prostaglandin I2 (prostacyclin) synthase Hs.302085 [show with all ESTs ] Unigene Representative Sequence: NM_000961 GeneLoc Exon Structure 3 Ensembl transcripts including schematic representations : ENST00000478764
ENST00000478971
ENST00000244043
Expression for PTGIS gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 223 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems ,
Primers from
OriGene and/or
SABiosciences
)
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User Feedback PTGIS expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for PTGIS 1 / 2 / 3
8 probe-sets matching PTGIS gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
759_at2 , 3
U95-A
1
0.88
1.00
0.49
0.95
D38145
1.00
1.00
1.00
1
36533_at2 , 3
U95-A
1
0.50
1.00
0.97
1.18
D83402
0.20
1.00
0.72
1
211892_s_at2 , 3
U133-A
1
0.91
1.00
--
--
AF297052
0.80
1.00
0.91
1
210702_s_at2 , 3
U133-A
1
0.91
1.00
--
--
D38145
1.00
1.00
1.00
1
208131_s_at2 , 3
U133-A
1
0.36
1.00
--
--
NM_000961
0.60
1.00
0.82
1
211892_s_at2
U133Plus2
1
0.91
1.00
--
--
--
--
--
--
--
210702_s_at2
U133Plus2
1
0.91
1.00
--
--
--
--
--
--
--
208131_s_at2
U133Plus2
1
0.36
1.00
--
--
--
--
--
--
--
About this table
PTGIS for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.302085 UniProtKB/Swiss-Prot: PTGIS_HUMAN, Q16647 Tissue specificity : Widely expressed; particularly abundant in ovary, heart, skeletal muscle, lung and prostate
Primers: Origene genome-wide validated SYBR primer pairs: PTGIS SABiosciences RT2 qPCR Primer Assay for PTGIS: PPH02582A
Orthologs for PTGIS gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI May 08 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for PTGIS gene from 5/6 species (see all 6
)
About this table Species with no ortholog for PTGIS ENSEMBL Gene Tree for PTGIS Paralogs for PTGIS gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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User Feedback Paralogs for PTGIS gene CYP39A1 2 CYP7A1 2 CYP8B1 2 CYP7B1 2
PTGIS for paralogs About GeneDecksing
Genomic Variants for PTGIS gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for PTGIS (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for PTGIS: --
Disorders & Mutations for PTGIS gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
BCGD,
and/or TGDB .)
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PTGIS for disorders About GeneDecksing
OMIM: 601699 disorders : 145500
10/78 Novoseek disease relationships for PTGIS gene (see all 78
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
hypertension pulmonary
22.38
27
19838762 (6), 15684702 (5), 12019369 (3), 11034952 (3) (see all 10 )
spondylitis
7.03
5
16059927 (4), 16081819 (1)
essential hypertension
5.40
11
12924623 (4), 11924728 (3), 11368458 (3), 9561119 (1)
infarction; myocardial
4.61
22
19040046 (5), 19534932 (4), 19327107 (4), 19065539 (3) (see all 7 )
cteph
3.90
3
15182267 (3)
cerebral infarction
3.62
6
11130769 (3), 11997284 (2), 12372404 (1)
lung tumor
3.45
5
19138979 (2), 17374734 (1), 15313935 (1), 11830527 (1)
colorectal polyp
2.47
2
16537708 (2)
familial pulmonary arterial hypertension
2.13
1
16373865 (1)
endotoxic shock
1.95
2
17164139 (1), 11076704 (1)
About this table Locus Specific Mutation Databases: PTGIS Human Gene Mutation Database : PTGIS Genetic Association Database: PTGIS Human Genome Epidemiology Navigator: PTGIS (27 documents)
Medical News for PTGIS gene (Possibly Related Articles in
Doctor's Guide )
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Publications for PTGIS gene (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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User Feedback 10/205 PubMed articles for PTGIS gene (see all 205
): Molecular cloning and expression of human prostacyclin synthase. (PubMed id 8185632) 1, 3 , 4 Miyata A.... Tanabe T. (1994) Sequence analysis, frequency and ethnic distribution of VNTR polymorphism in the 5'-untranslated region of the human prostacyclin synthase gene (CYP8A1). (PubMed id 12428676) 1, 3 , 6 Chevalier D....Broly F. (2002) Human gene encoding prostacyclin synthase (PTGIS): genomic organization, chromosomal localization, and promoter activity. (PubMed id 8812456) 1, 2, 3 Yokoyama C.... Tanabe T. (1996) Polymorphism of the promoter region of prostacyclin synthase gene in chronic thromboembolic pulmonary hypertension. (PubMed id 15182267) 1, 3 , 6 Amano S....Kuriyama T. (2004) Splicing mutation of the prostacyclin synthase gene in a family associated with hypertension. (PubMed id 12372404) 1, 3 , 6 Nakayama T....Oates J.A. (2002) Haplotype analysis of the prostacyclin synthase gene and essential hypertension. (PubMed id 12924623) 1, 3 , 6 Nakayama T....Kokubun S. (2003) Association study between a novel single nucleotide polymorphism of the promoter region of the prostacyclin synthase gene and essential hypertension. (PubMed id 11924728) 1, 3 , 6 Nakayama T....Kokubun S. (2002) Polymorphism of the promoter region of prostacyclin synthase gene is not related to essential hypertension. (PubMed id 11368458) 1, 3 , 6 Nakayama T....Kanmatsuse K. (2001) Characterization of new mutations in the coding sequence and 5'- untranslated region of the human prostacylcin synthase gene (CYP8A1). (PubMed id 11281454) 1, 3 , 4 Chevalier D....Broly F. (2001) Association of 5' upstream promoter region of prostacyclin synthase gene variant with cerebral infarction. (PubMed id 11130769) 1, 3 , 6 Nakayama T....Kanmatsuse K. (2000)
Search for PTGIS gene
(in PubMed ,
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Genome Databases showing PTGIS gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing PTGIS gene
(According to HUGE )
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Specialized Databases showing PTGIS gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
Cytochrome P450 Allele Nomenclature Committee http://www.cypalleles.ki.se/cyp8a1.htm
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User Feedback Patent Information for PTGIS gene: Search GeneIP for patents involving PTGIS GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search Services for PTGIS gene (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Novus Biologicals ,Epitomics , Sigma-Aldrich , R&D Systems , SABiosciences , Millipore , Abnova , Clones available from OriGene , Sigma-Aldrich , Sino Biological , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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User Feedback Products for PTGIS:
Search Tocris compounds for PTGIS
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