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Aliases for PSMG3-AS1 Gene

Subcategory (RNA class) for PSMG3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PSMG3-AS1 Gene

  • PSMG3 Antisense RNA 1 (Head To Head) 2 3 5
  • PSMG3 Antisense RNA 1 4
  • KIAA1908 4

External Ids for PSMG3-AS1 Gene

Previous GeneCards Identifiers for PSMG3-AS1 Gene

  • GC07P001615

Summaries for PSMG3-AS1 Gene

GeneCards Summary for PSMG3-AS1 Gene

PSMG3-AS1 (PSMG3 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PSMG3-AS1 Gene

Genomics for PSMG3-AS1 Gene

Regulatory Elements for PSMG3-AS1 Gene

Enhancers for PSMG3-AS1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around PSMG3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for PSMG3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around PSMG3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for PSMG3-AS1 Gene

Chromosome:
7
Start:
1,570,073 bp from pter
End:
1,589,626 bp from pter
Size:
19,554 bases
Orientation:
Plus strand

Genomic View for PSMG3-AS1 Gene

Genes around PSMG3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PSMG3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PSMG3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PSMG3-AS1 Gene

Proteins for PSMG3-AS1 Gene

  • Protein details for PSMG3-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96PY0-K1908_HUMAN
    Recommended name:
    Putative uncharacterized protein PSMG3-AS1
    Protein Accession:
    Q96PY0
    Secondary Accessions:
    • Q8NAR8
    • Q8NBC0

    Protein attributes for PSMG3-AS1 Gene

    Size:
    264 amino acids
    Molecular mass:
    28245 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB67801.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for PSMG3-AS1 Gene

Proteomics data for PSMG3-AS1 Gene at MOPED

Post-translational modifications for PSMG3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PSMG3-AS1 Gene

Domains & Families for PSMG3-AS1 Gene

Protein Domains for PSMG3-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PSMG3-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PSMG3-AS1 Gene

Function for PSMG3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PSMG3-AS1 Gene

Localization for PSMG3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PSMG3-AS1 Gene

Pathways & Interactions for PSMG3-AS1 Gene

SuperPathways for PSMG3-AS1 Gene

No Data Available

Interacting Proteins for PSMG3-AS1 Gene

Gene Ontology (GO) - Biological Process for PSMG3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PSMG3-AS1 Gene

Drugs & Compounds for PSMG3-AS1 Gene

No Compound Related Data Available

Transcripts for PSMG3-AS1 Gene

Unigene Clusters for PSMG3-AS1 Gene

PSMG3 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PSMG3-AS1 Gene

No ASD Table

Relevant External Links for PSMG3-AS1 Gene

GeneLoc Exon Structure for
PSMG3-AS1
ECgene alternative splicing isoforms for
PSMG3-AS1

Expression for PSMG3-AS1 Gene

mRNA expression in normal human tissues for PSMG3-AS1 Gene

SOURCE GeneReport for Unigene cluster for PSMG3-AS1 Gene Hs.436146

genes like me logo Genes that share expression patterns with PSMG3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for PSMG3-AS1 Gene

Orthologs for PSMG3-AS1 Gene

Evolution for PSMG3-AS1 Gene

ENSEMBL:
Gene Tree for PSMG3-AS1 (if available)
TreeFam:
Gene Tree for PSMG3-AS1 (if available)

No data available for Orthologs for PSMG3-AS1 Gene

Paralogs for PSMG3-AS1 Gene

No data available for Paralogs for PSMG3-AS1 Gene

Variants for PSMG3-AS1 Gene

Sequence variations from dbSNP and Humsavar for PSMG3-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs12671261 -- 1,581,684(+) TGGCG(C/G)GCACC intron-variant
rs12672891 -- 1,581,611(+) CATGA(C/T)TGAGA intron-variant
rs12673322 -- 1,581,776(+) ACCAC(C/G/T)GCACT intron-variant
rs13233816 -- 1,582,761(+) tccga(A/G)tagct intron-variant
rs13312119 -- 1,590,093(+) ggtga(C/T)ccccc downstream-variant-500B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PSMG3-AS1 Gene

Disorders for PSMG3-AS1 Gene

Relevant External Links for PSMG3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PSMG3-AS1

No disorders were found for PSMG3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PSMG3-AS1 Gene

Publications for PSMG3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins. (PMID: 11572484) Nagase T. … Ohara O. (DNA Res. 2001) 3

Products for PSMG3-AS1 Gene

Sources for PSMG3-AS1 Gene

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