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Aliases for PSMG3-AS1 Gene

Subcategory (RNA class) for PSMG3-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for PSMG3-AS1 Gene

  • PSMG3 Antisense RNA 1 (Head To Head) 2 3
  • PSMG3 Antisense RNA 1 4
  • KIAA1908 4

External Ids for PSMG3-AS1 Gene

Summaries for PSMG3-AS1 Gene

GeneCards Summary for PSMG3-AS1 Gene

PSMG3-AS1 (PSMG3 Antisense RNA 1 (Head To Head)) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PSMG3-AS1 Gene

Genomics for PSMG3-AS1 Gene

Genomic Location for PSMG3-AS1 Gene

Start:
1,570,073 bp from pter
End:
1,589,626 bp from pter
Size:
19,554 bases
Orientation:
Plus strand

Genomic View for PSMG3-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PSMG3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PSMG3-AS1 Gene

No data available for Regulatory Elements for PSMG3-AS1 Gene

Proteins for PSMG3-AS1 Gene

  • Protein details for PSMG3-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96PY0-K1908_HUMAN
    Recommended name:
    Putative uncharacterized protein PSMG3-AS1
    Protein Accession:
    Q96PY0
    Secondary Accessions:
    • Q8NAR8
    • Q8NBC0

    Protein attributes for PSMG3-AS1 Gene

    Size:
    264 amino acids
    Molecular mass:
    28245 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB67801.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for PSMG3-AS1 Gene

Proteomics data for PSMG3-AS1 Gene at MOPED

Post-translational modifications for PSMG3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PSMG3-AS1 Gene

Domains for PSMG3-AS1 Gene

Gene Families for PSMG3-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for PSMG3-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with PSMG3-AS1: view

No data available for UniProtKB/Swiss-Prot for PSMG3-AS1 Gene

Function for PSMG3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for PSMG3-AS1 Gene

Localization for PSMG3-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for PSMG3-AS1 Gene

Pathways for PSMG3-AS1 Gene

SuperPathways for PSMG3-AS1 Gene

No Data Available

Interacting Proteins for PSMG3-AS1 Gene

Gene Ontology (GO) - Biological Process for PSMG3-AS1 Gene

None

No data available for Pathways by source for PSMG3-AS1 Gene

Transcripts for PSMG3-AS1 Gene

Unigene Clusters for PSMG3-AS1 Gene

PSMG3 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PSMG3-AS1 Gene

No ASD Table

Relevant External Links for PSMG3-AS1 Gene

GeneLoc Exon Structure for
PSMG3-AS1
ECgene alternative splicing isoforms for
PSMG3-AS1

Expression for PSMG3-AS1 Gene

mRNA expression in normal human tissues for PSMG3-AS1 Gene

SOURCE GeneReport for Unigene cluster for PSMG3-AS1 Gene Hs.436146

genes like me logo Genes that share expressions with PSMG3-AS1: view

Orthologs for PSMG3-AS1 Gene

Evolution for PSMG3-AS1 Gene

ENSEMBL:
Gene Tree for PSMG3-AS1 (if available)
TreeFam:
Gene Tree for PSMG3-AS1 (if available)

No data available for Orthologs for PSMG3-AS1 Gene

Paralogs for PSMG3-AS1 Gene

No data available for Paralogs for PSMG3-AS1 Gene

Variants for PSMG3-AS1 Gene

Sequence variations from dbSNP and Humsavar for PSMG3-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs1275 -- 1,589,552(-) acaat(A/G)ttgta nc-transcript-variant
rs2033571 -- 1,575,081(+) TTTGA(A/G)ATGGA intron-variant
rs2164077 -- 1,579,752(-) ACACC(C/T)CCCTC intron-variant
rs4368888 -- 1,589,749(+) ttggc(A/G)attgg downstream-variant-500B
rs4518570 -- 1,589,740(+) atcag(C/T)ttttt downstream-variant-500B

Relevant External Links for PSMG3-AS1 Gene

HapMap Linkage Disequilibrium report
PSMG3-AS1

No data available for Structural Variations from Database of Genomic Variants (DGV) for PSMG3-AS1 Gene

Disorders for PSMG3-AS1 Gene

No disorders were found for PSMG3-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for PSMG3-AS1 Gene

Publications for PSMG3-AS1 Gene

  1. Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins. (PMID: 11572484) Nagase T. … Ohara O. (DNA Res. 2001) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for PSMG3-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate PSMG3-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for PSMG3-AS1
    • Block miRNA regulation of PSMG3-AS1 using miScript Target Protectors

    Sources for PSMG3-AS1 Gene

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