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Aliases for PSMG3-AS1 Gene

Subcategory (RNA class) for PSMG3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PSMG3-AS1 Gene

  • PSMG3 Antisense RNA 1 (Head To Head) 2 3 5
  • PSMG3 Antisense RNA 1 4
  • KIAA1908 4

External Ids for PSMG3-AS1 Gene

Previous GeneCards Identifiers for PSMG3-AS1 Gene

  • GC07P001615

Summaries for PSMG3-AS1 Gene

GeneCards Summary for PSMG3-AS1 Gene

PSMG3-AS1 (PSMG3 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PSMG3-AS1 Gene

Genomics for PSMG3-AS1 Gene

Regulatory Elements for PSMG3-AS1 Gene

Enhancers for PSMG3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F001565 0.8 ENCODE 11.2 -0.8 -779 6.6 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 SLC30A9 ZNF143 ZNF207 FOS SP3 PSMG3-AS1 MAFK PSMG3 GC07P001567
GH07F001638 0.4 ENCODE 11.2 +68.4 68447 0.1 WT1 ENSG00000234977 ENSG00000205971 PSMG3 PSMG3-AS1 PIR45811 LOC105375303
GH07F001564 0.5 Ensembl ENCODE 10.8 -5.3 -5293 1.5 ZNF263 ZNF121 SMARCC1 SCRT2 CEBPB MAX ZSCAN29 ZNF24 PSMG3-AS1 PSMG3 GC07P001567 TMEM184A
GH07F001562 0.6 ENCODE 10.2 -7.4 -7376 1.2 MXI1 SMARCA4 SAP130 POLR2A GABPB1 MNT ZNF48 PSMG3-AS1 PSMG3 NUDT1 GC07P001567 TMEM184A
GH07F001575 1.2 FANTOM5 ENCODE 8.9 +6.6 6641 2.0 BCOR ESRRA CBX3 TEAD4 MAX ZMYM3 YBX1 ZNF366 POLR2A ADNP MAFK ENSG00000231927 INTS1 PSMG3-AS1 ELFN1 PSMG3 LOC105375122
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around PSMG3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for PSMG3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001556826 327 2401 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 SLC30A9 ZNF143 ZNF207 SP3 REST

Genomic Location for PSMG3-AS1 Gene

Chromosome:
7
Start:
1,570,073 bp from pter
End:
1,589,626 bp from pter
Size:
19,554 bases
Orientation:
Plus strand

Genomic View for PSMG3-AS1 Gene

Genes around PSMG3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PSMG3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PSMG3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PSMG3-AS1 Gene

Proteins for PSMG3-AS1 Gene

  • Protein details for PSMG3-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96PY0-K1908_HUMAN
    Recommended name:
    Putative uncharacterized protein PSMG3-AS1
    Protein Accession:
    Q96PY0
    Secondary Accessions:
    • Q8NAR8
    • Q8NBC0

    Protein attributes for PSMG3-AS1 Gene

    Size:
    264 amino acids
    Molecular mass:
    28245 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB67801.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for PSMG3-AS1 Gene

Post-translational modifications for PSMG3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PSMG3-AS1 Gene

Domains & Families for PSMG3-AS1 Gene

Protein Domains for PSMG3-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PSMG3-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PSMG3-AS1 Gene

Function for PSMG3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PSMG3-AS1 Gene

Localization for PSMG3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PSMG3-AS1 Gene

Pathways & Interactions for PSMG3-AS1 Gene

SuperPathways for PSMG3-AS1 Gene

No Data Available

Interacting Proteins for PSMG3-AS1 Gene

Gene Ontology (GO) - Biological Process for PSMG3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PSMG3-AS1 Gene

Transcripts for PSMG3-AS1 Gene

Unigene Clusters for PSMG3-AS1 Gene

PSMG3 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PSMG3-AS1 Gene

No ASD Table

Relevant External Links for PSMG3-AS1 Gene

GeneLoc Exon Structure for
PSMG3-AS1
ECgene alternative splicing isoforms for
PSMG3-AS1

Expression for PSMG3-AS1 Gene

mRNA expression in normal human tissues for PSMG3-AS1 Gene

SOURCE GeneReport for Unigene cluster for PSMG3-AS1 Gene:

Hs.436146
genes like me logo Genes that share expression patterns with PSMG3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for PSMG3-AS1 Gene

Orthologs for PSMG3-AS1 Gene

Evolution for PSMG3-AS1 Gene

ENSEMBL:
Gene Tree for PSMG3-AS1 (if available)
TreeFam:
Gene Tree for PSMG3-AS1 (if available)

No data available for Orthologs for PSMG3-AS1 Gene

Paralogs for PSMG3-AS1 Gene

No data available for Paralogs for PSMG3-AS1 Gene

Variants for PSMG3-AS1 Gene

Sequence variations from dbSNP and Humsavar for PSMG3-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10239460 -- 1,568,568(+) tcaag(C/T)catcc intron-variant, upstream-variant-2KB
rs10246592 -- 1,577,798(+) catcc(A/G)tccat intron-variant
rs10247118 -- 1,569,963(+) GGCTA(C/T)TGGGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs10248246 -- 1,573,122(+) ggctg(A/G)tctca intron-variant
rs10253208 -- 1,570,194(+) AGCCG(A/G)ACCCC nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for PSMG3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1070717 CNV deletion 17803354
esv2733774 CNV deletion 23290073
esv2742352 CNV deletion 23290073
esv2759499 CNV loss 17122850
nsv1074998 CNV deletion 25765185
nsv1078257 CNV insertion 25765185
nsv1130860 CNV deletion 24896259
nsv1146326 CNV deletion 26484159
nsv1153516 CNV deletion 26484159
nsv5615 CNV deletion 18451855
nsv605820 CNV loss 21841781
nsv830879 CNV gain+loss 17160897
nsv830880 CNV loss 17160897
nsv950786 CNV deletion 24416366

Relevant External Links for PSMG3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PSMG3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PSMG3-AS1 Gene

Disorders for PSMG3-AS1 Gene

Relevant External Links for PSMG3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PSMG3-AS1

No disorders were found for PSMG3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PSMG3-AS1 Gene

Publications for PSMG3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins. (PMID: 11572484) Nagase T. … Ohara O. (DNA Res. 2001) 3 4 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for PSMG3-AS1 Gene

Sources for PSMG3-AS1 Gene

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