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Aliases for PSMD13 Gene

Aliases for PSMD13 Gene

  • Proteasome 26S Subunit, Non-ATPase 13 2 3 5
  • Proteasome (Prosome, Macropain) 26S Subunit, Non-ATPase, 13 2 3
  • 26S Proteasome Regulatory Subunit P40.5 3 4
  • 26S Proteasome Regulatory Subunit RPN9 3 4
  • 26S Proteasome Regulatory Subunit S11 3 4
  • 26S Proteasome Subunit P40.5 3
  • HSPC027 3
  • P40.5 3
  • Rpn9 3
  • S11 3

External Ids for PSMD13 Gene

Previous GeneCards Identifiers for PSMD13 Gene

  • GC11P000459
  • GC11P000281
  • GC11M000945
  • GC11P000056

Summaries for PSMD13 Gene

Entrez Gene Summary for PSMD13 Gene

  • The 26S proteasome is a multicatalytic proteinase complex with a highly ordered structure composed of 2 complexes, a 20S core and a 19S regulator. The 20S core is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta subunits. The 19S regulator is composed of a base, which contains 6 ATPase subunits and 2 non-ATPase subunits, and a lid, which contains up to 10 non-ATPase subunits. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiquitin-dependent process in a non-lysosomal pathway. An essential function of a modified proteasome, the immunoproteasome, is the processing of class I MHC peptides. This gene encodes a non-ATPase subunit of the 19S regulator. Two transcripts encoding different isoforms have been described. [provided by RefSeq, Jul 2008]

GeneCards Summary for PSMD13 Gene

PSMD13 (Proteasome 26S Subunit, Non-ATPase 13) is a Protein Coding gene. Among its related pathways are Epstein-Barr virus infection and CDK-mediated phosphorylation and removal of Cdc6.

UniProtKB/Swiss-Prot for PSMD13 Gene

  • Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Gene Wiki entry for PSMD13 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PSMD13 Gene

Genomics for PSMD13 Gene

Regulatory Elements for PSMD13 Gene

Enhancers for PSMD13 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around PSMD13 on UCSC Golden Path with GeneCards custom track

Promoters for PSMD13 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around PSMD13 on UCSC Golden Path with GeneCards custom track

Genomic Location for PSMD13 Gene

Chromosome:
11
Start:
236,546 bp from pter
End:
252,984 bp from pter
Size:
16,439 bases
Orientation:
Plus strand

Genomic View for PSMD13 Gene

Genes around PSMD13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PSMD13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PSMD13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PSMD13 Gene

Proteins for PSMD13 Gene

  • Protein details for PSMD13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UNM6-PSD13_HUMAN
    Recommended name:
    26S proteasome non-ATPase regulatory subunit 13
    Protein Accession:
    Q9UNM6
    Secondary Accessions:
    • B3KT15
    • O75831
    • Q53XU2
    • Q9UNV3

    Protein attributes for PSMD13 Gene

    Size:
    376 amino acids
    Molecular mass:
    42945 Da
    Quaternary structure:
    • Component of the PA700 complex.

    Alternative splice isoforms for PSMD13 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PSMD13 Gene

Proteomics data for PSMD13 Gene at MOPED

Post-translational modifications for PSMD13 Gene

  • Ubiquitination at Lys 2, Lys 99, Lys 115, Lys 122, Lys 161, Lys 174, Lys 186, Lys 252, Lys 313, Lys 321, and Lys 347
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for PSMD13 Gene

Domains & Families for PSMD13 Gene

Gene Families for PSMD13 Gene

Protein Domains for PSMD13 Gene

Suggested Antigen Peptide Sequences for PSMD13 Gene

Graphical View of Domain Structure for InterPro Entry

Q9UNM6

UniProtKB/Swiss-Prot:

PSD13_HUMAN :
  • Contains 1 PCI domain.
  • Belongs to the proteasome subunit S11 family.
Domain:
  • Contains 1 PCI domain.
Family:
  • Belongs to the proteasome subunit S11 family.
genes like me logo Genes that share domains with PSMD13: view

Function for PSMD13 Gene

Molecular function for PSMD13 Gene

UniProtKB/Swiss-Prot Function:
Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
genes like me logo Genes that share phenotypes with PSMD13: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PSMD13 Gene

Localization for PSMD13 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PSMD13 Gene COMPARTMENTS Subcellular localization image for PSMD13 gene
Compartment Confidence
cytosol 5
extracellular 5
nucleus 5
peroxisome 1

Gene Ontology (GO) - Cellular Components for PSMD13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with PSMD13: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for PSMD13 Gene

Pathways & Interactions for PSMD13 Gene

SuperPathways for PSMD13 Gene

Superpath Contained pathways
1 CDK-mediated phosphorylation and removal of Cdc6
.78
2 Interleukin-3, 5 and GM-CSF signaling
3 Infectious disease
.48
4 Immune System
5 Cell Cycle, Mitotic
.61
genes like me logo Genes that share pathways with PSMD13: view

Gene Ontology (GO) - Biological Process for PSMD13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000165 MAPK cascade TAS --
GO:0000186 activation of MAPKK activity TAS --
GO:0000209 protein polyubiquitination TAS --
GO:0002223 stimulatory C-type lectin receptor signaling pathway TAS --
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I TAS --
genes like me logo Genes that share ontologies with PSMD13: view

No data available for SIGNOR curated interactions for PSMD13 Gene

Drugs & Compounds for PSMD13 Gene

(2) Drugs for PSMD13 Gene - From: DGIdb

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Bortezomib Approved, Experimental, Investigational Pharma inhibitor, other Proteosome and NF-kappaB inhibitor, Other, Proteasome inhibitors 776
carfilzomib Approved Pharma other, Inhibitor Other, 20S Proteasome Inhibitor 0
genes like me logo Genes that share compounds with PSMD13: view

Transcripts for PSMD13 Gene

Unigene Clusters for PSMD13 Gene

Proteasome (prosome, macropain) 26S subunit, non-ATPase, 13:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PSMD13 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b · 14c · 14d
SP1: - - -
SP2: - - - -
SP3: - -
SP4: -
SP5: - - - -
SP6:
SP7:
SP8:

Relevant External Links for PSMD13 Gene

GeneLoc Exon Structure for
PSMD13
ECgene alternative splicing isoforms for
PSMD13

Expression for PSMD13 Gene

mRNA expression in normal human tissues for PSMD13 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for PSMD13 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (7.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for PSMD13 Gene



SOURCE GeneReport for Unigene cluster for PSMD13 Gene Hs.134688

genes like me logo Genes that share expression patterns with PSMD13: view

Protein tissue co-expression partners for PSMD13 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for PSMD13 Gene

Orthologs for PSMD13 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for PSMD13 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia PSMD13 35
  • 91.22 (n)
  • 98.14 (a)
PSMD13 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PSMD13 35
  • 92.82 (n)
  • 98.94 (a)
PSMD13 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Psmd13 35
  • 89.98 (n)
  • 96.54 (a)
Psmd13 16
Psmd13 36
  • 87 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia PSMD13 35
  • 99.56 (n)
  • 99.73 (a)
PSMD13 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Psmd13 35
  • 90.07 (n)
  • 96.81 (a)
oppossum
(Monodelphis domestica)
Mammalia PSMD13 36
  • 51 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PSMD13 36
  • 50 (a)
OneToOne
chicken
(Gallus gallus)
Aves PSMD13 35
  • 82.89 (n)
  • 95.48 (a)
PSMD13 36
  • 86 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 85 (a)
OneToMany
-- 36
  • 84 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia psmd13 35
  • 76.06 (n)
  • 86.97 (a)
Str.1435 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.3428 35
zebrafish
(Danio rerio)
Actinopterygii psmd13 35
  • 73.67 (n)
  • 79.79 (a)
zgc56377 35
psmd13 36
  • 72 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9211 35
fruit fly
(Drosophila melanogaster)
Insecta Rpn9 37
  • 45 (a)
Rpn9 35
  • 52.99 (n)
  • 45.31 (a)
Rpn9 36
  • 40 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP001651 35
  • 55.14 (n)
  • 48.79 (a)
worm
(Caenorhabditis elegans)
Secernentea rpn-9 35
  • 48.92 (n)
  • 42.82 (a)
rpn-9 36
  • 36 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ADR191C 35
  • 44.13 (n)
  • 34.66 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0B00825g 35
  • 44.83 (n)
  • 35.07 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPN9 35
  • 44.85 (n)
  • 33.15 (a)
RPN9 36
  • 27 (a)
OneToOne
RPN9 38
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G19006 35
  • 51.8 (n)
  • 38.92 (a)
rice
(Oryza sativa)
Liliopsida Os01g0511300 35
  • 50.27 (n)
  • 40 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU02374 35
  • 51.54 (n)
  • 39.4 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rpn9 35
  • 45.76 (n)
  • 36.39 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 59 (a)
OneToOne
Species with no ortholog for PSMD13:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PSMD13 Gene

ENSEMBL:
Gene Tree for PSMD13 (if available)
TreeFam:
Gene Tree for PSMD13 (if available)

Paralogs for PSMD13 Gene

(1) SIMAP similar genes for PSMD13 Gene using alignment to 8 proteins:

genes like me logo Genes that share paralogs with PSMD13: view

No data available for Paralogs for PSMD13 Gene

Variants for PSMD13 Gene

Sequence variations from dbSNP and Humsavar for PSMD13 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
VAR_024591 -
rs1794108 - 248,818(+) AGCAG(A/G)ATTTC reference, missense
rs1794109 - 248,820(+) CAGAA(C/T)TTCTC reference, missense
rs28927679 - 247,329(+) GACAT(C/T)GGTTC reference, missense
rs524555 -- 246,678(+) cacca(A/T)atgag intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PSMD13 Gene

Variant ID Type Subtype PubMed ID
dgv910n71 CNV Gain 21882294
nsv896436 CNV Gain 21882294
nsv896437 CNV Loss 21882294
dgv911n71 CNV Gain 21882294
nsv522596 CNV Gain 19592680
nsv467631 CNV Gain 19166990
nsv896440 CNV Gain 21882294
nsv896441 CNV Loss 21882294
esv32593 CNV Loss 17666407
dgv912n71 CNV Gain 21882294
nsv469921 CNV Gain 18288195
nsv7632 CNV Insertion 18451855
nsv896445 CNV Loss 21882294
nsv896447 CNV Loss 21882294
nsv896449 CNV Gain 21882294
nsv527533 CNV Gain 19592680
nsv516439 CNV Loss 19592680

Variation tolerance for PSMD13 Gene

Residual Variation Intolerance Score: 53% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.46; 28.56% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PSMD13 Gene

HapMap Linkage Disequilibrium report
PSMD13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PSMD13 Gene

Disorders for PSMD13 Gene

Relevant External Links for PSMD13

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PSMD13

No disorders were found for PSMD13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PSMD13 Gene

Publications for PSMD13 Gene

  1. cDNA cloning and functional analysis of p28 (Nas6p) and p40.5 (Nas7p), two novel regulatory subunits of the 26S proteasome. (PMID: 9714768) Hori T. … Tanaka K. (Gene 1998) 2 3 4 23 67
  2. Characterization of a bidirectional promoter shared between two human genes related to aging: SIRT3 and PSMD13. (PMID: 17059877) Bellizzi D. … De Benedictis G. (Genomics 2007) 3 23
  3. Structure and functions of the 20S and 26S proteasomes. (PMID: 8811196) Coux O. … Goldberg A.L. (Annu. Rev. Biochem. 1996) 2 3
  4. ABCE1 is a highly conserved RNA silencing suppressor. (PMID: 25659154) KAorblane K. … Sarmiento C. (PLoS ONE 2015) 3
  5. Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation. (PMID: 25921289) Emdal K.B. … Olsen J.V. (Sci Signal 2015) 3

Products for PSMD13 Gene

Sources for PSMD13 Gene

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