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Aliases for PSMB8-AS1 Gene

Subcategory (RNA class) for PSMB8-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PSMB8-AS1 Gene

  • PSMB8 Antisense RNA 1 (Head To Head) 2 3 5
  • TAP1 And PSMB8 Antisense RNA 1 2 3
  • XXbac-BPG246D15.8 3
  • TAP1-AS1 3
  • TAPSAR1 3

External Ids for PSMB8-AS1 Gene

Previous HGNC Symbols for PSMB8-AS1 Gene

  • TAPSAR1

Summaries for PSMB8-AS1 Gene

GeneCards Summary for PSMB8-AS1 Gene

PSMB8-AS1 (PSMB8 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PSMB8-AS1 Gene

Genomics for PSMB8-AS1 Gene

Regulatory Elements for PSMB8-AS1 Gene

Enhancers for PSMB8-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F032965 1.2 ENCODE 11.1 +126.6 126583 10.4 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 NFYC BRD2 VPS52 ATF6B LEMD2 RING1 RXRB DAXX MIR6873 HCG25 PPT2
GH06F032837 1.4 Ensembl ENCODE 8 -1.8 -1848 9.8 HDGF PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 HLA-DMA PSMB9 TAP1 HLA-DRB1 HLA-DOB PSMB8-AS1 PSMB8 HLA-DQA1 TAP2
GH06F032851 1.5 FANTOM5 ENCODE 5.7 +9.8 9821 5.2 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 PSMB9 TAP1 BRD2 RING1 VPS52 ZBTB12 LEMD2 EHMT2 PSMB8 MIR5004
GH06F032866 1.4 FANTOM5 Ensembl ENCODE 5.3 +23.5 23546 1.7 CTCF IRF2 PKNOX1 SAP130 GTF2E2 RAD21 RFX5 RELA ZFHX2 POLR2A PSMB9 PSMB8-AS1 PSMB8 TAP1 TAP2 BRD2 GC06P032876
GH06F032963 0.7 Ensembl 10.5 +120.2 120215 1.4 KLF1 MCM3 PLRG1 MNT OSR2 CTBP1 GATA3 ZNF366 HDAC2 POLR2A HLA-DMB EGFL8 TAP1 PSMB9 PSMB8 PSMB8-AS1 PPT2 RING1 HLA-DRB6 GC06M032966
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PSMB8-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for PSMB8-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000025364 314 2801 HDGF ATF1 WRNIP1 SIN3A ARID4B DMAP1 BRCA1 YY1 ZNF143 ZNF263

Genomic Location for PSMB8-AS1 Gene

Chromosome:
6
Start:
32,844,086 bp from pter
End:
32,846,500 bp from pter
Size:
2,415 bases
Orientation:
Plus strand

Genomic View for PSMB8-AS1 Gene

Genes around PSMB8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PSMB8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PSMB8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for PSMB8-AS1 Gene

Post-translational modifications for PSMB8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PSMB8-AS1 Gene

Domains & Families for PSMB8-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PSMB8-AS1 Gene

Function for PSMB8-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PSMB8-AS1 Gene

Localization for PSMB8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PSMB8-AS1 Gene

Pathways & Interactions for PSMB8-AS1 Gene

SuperPathways for PSMB8-AS1 Gene

No Data Available

Interacting Proteins for PSMB8-AS1 Gene

Gene Ontology (GO) - Biological Process for PSMB8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PSMB8-AS1 Gene

Transcripts for PSMB8-AS1 Gene

mRNA/cDNA for PSMB8-AS1 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PSMB8-AS1 Gene

No ASD Table

Relevant External Links for PSMB8-AS1 Gene

GeneLoc Exon Structure for
PSMB8-AS1
ECgene alternative splicing isoforms for
PSMB8-AS1

Expression for PSMB8-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for PSMB8-AS1 Gene

Orthologs for PSMB8-AS1 Gene

Evolution for PSMB8-AS1 Gene

ENSEMBL:
Gene Tree for PSMB8-AS1 (if available)
TreeFam:
Gene Tree for PSMB8-AS1 (if available)

No data available for Orthologs for PSMB8-AS1 Gene

Paralogs for PSMB8-AS1 Gene

No data available for Paralogs for PSMB8-AS1 Gene

Variants for PSMB8-AS1 Gene

Sequence variations from dbSNP and Humsavar for PSMB8-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1053752 -- 32,846,350(+) ggccc(A/G)gtggc intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1057373 -- 32,845,502(-) GAGTA(G/T)GCAGC nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs111876139 -- 32,846,712(+) TACTC(A/G)GGAGG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs111912354 -- 32,843,867(+) GGGTA(A/G)AGCGA intron-variant, upstream-variant-2KB, reference, synonymous-codon
rs11257 -- 32,846,087(-) AAATC(G/T)AATAT intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for PSMB8-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1119076 CNV deletion 24896259
nsv830633 CNV loss 17160897

Relevant External Links for PSMB8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PSMB8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PSMB8-AS1 Gene

Disorders for PSMB8-AS1 Gene

Relevant External Links for PSMB8-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PSMB8-AS1

No disorders were found for PSMB8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PSMB8-AS1 Gene

Publications for PSMB8-AS1 Gene

  1. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 64
  2. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud P.J. … . (Am. J. Hum. Genet. 2009) 3 64

Products for PSMB8-AS1 Gene

Sources for PSMB8-AS1 Gene

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