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Aliases for PSMB8-AS1 Gene

Subcategory (RNA class) for PSMB8-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PSMB8-AS1 Gene

  • PSMB8 Antisense RNA 1 (Head To Head) 2 3 5
  • TAP1 And PSMB8 Antisense RNA 1 2 3
  • XXbac-BPG246D15.8 3
  • TAP1-AS1 3
  • TAPSAR1 3

External Ids for PSMB8-AS1 Gene

Previous HGNC Symbols for PSMB8-AS1 Gene

  • TAPSAR1

Summaries for PSMB8-AS1 Gene

GeneCards Summary for PSMB8-AS1 Gene

PSMB8-AS1 (PSMB8 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PSMB8-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PSMB8-AS1 Gene

Genomics for PSMB8-AS1 Gene

Regulatory Elements for PSMB8-AS1 Gene

Enhancers for PSMB8-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H032965 1.5 ENCODE dbSUPER 11.1 +126.6 126583 10 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC ZC3H11A PPARGC1A BRD2 LEMD2 VPS52 RXRB ATF6B HCG25 RING1 DAXX WDR46 PPT2
GH06H032940 1.6 FANTOM5 ENCODE dbSUPER 10.3 +100.1 100111 8 HDGF ATF1 SIN3A ARID4B BRCA1 ZNF2 ZNF143 ZNF207 FOS ATF7 HLA-DMA BRD2 PSMB9 TAP1 TAP2 PSMB8 RING1 HLA-DMB HLA-DOB ENSG00000223837
GH06H033198 1.4 ENCODE dbSUPER 10.2 +356.9 356915 4 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 RPS18 DAXX WDR46 BRD2 ZBTB22 LEMD2 HLA-DOB HLA-DOA PSMB8 PSMB8-AS1
GH06H033390 1.2 ENCODE 10.2 +548.6 548560 4 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D ZNF610 DAXX BRD2 RXRB WDR46 LEMD2 VPS52 RGL2 RPS18 HLA-DOB PHF1
GH06H032126 1.2 ENCODE 10.2 -715.0 -714993 4 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B VARS BAG6 BRD2 TNXB GPANK1 LSM2 CSNK2B DDX39B LY6G5B ATF6B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PSMB8-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for PSMB8-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195713 214 2201 HDGF ATF1 SIN3A ARID4B DMAP1 BRCA1 YY1 ZNF143 ATF7 RUNX3

Genomic Location for PSMB8-AS1 Gene

Chromosome:
6
Start:
32,844,086 bp from pter
End:
32,846,500 bp from pter
Size:
2,415 bases
Orientation:
Plus strand

Genomic View for PSMB8-AS1 Gene

Genes around PSMB8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PSMB8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PSMB8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for PSMB8-AS1 Gene

Post-translational modifications for PSMB8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PSMB8-AS1 Gene

Domains & Families for PSMB8-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PSMB8-AS1 Gene

Function for PSMB8-AS1 Gene

Phenotypes From GWAS Catalog for PSMB8-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PSMB8-AS1 Gene

Localization for PSMB8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PSMB8-AS1 Gene

Pathways & Interactions for PSMB8-AS1 Gene

SuperPathways for PSMB8-AS1 Gene

No Data Available

Interacting Proteins for PSMB8-AS1 Gene

Gene Ontology (GO) - Biological Process for PSMB8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PSMB8-AS1 Gene

Drugs & Compounds for PSMB8-AS1 Gene

No Compound Related Data Available

Transcripts for PSMB8-AS1 Gene

mRNA/cDNA for PSMB8-AS1 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PSMB8-AS1 Gene

No ASD Table

Relevant External Links for PSMB8-AS1 Gene

GeneLoc Exon Structure for
PSMB8-AS1
ECgene alternative splicing isoforms for
PSMB8-AS1

Expression for PSMB8-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PSMB8-AS1 Gene

Orthologs for PSMB8-AS1 Gene

Evolution for PSMB8-AS1 Gene

ENSEMBL:
Gene Tree for PSMB8-AS1 (if available)
TreeFam:
Gene Tree for PSMB8-AS1 (if available)

No data available for Orthologs for PSMB8-AS1 Gene

Paralogs for PSMB8-AS1 Gene

No data available for Paralogs for PSMB8-AS1 Gene

Variants for PSMB8-AS1 Gene

Sequence variations from dbSNP and Humsavar for PSMB8-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs114772012 Likely benign 32,843,975(+) GGCTC(C/T)GCATA intron-variant, upstream-variant-2KB, reference, missense
rs2071542 Likely benign 32,843,868(-) CTCGC(C/T)TTACC intron-variant, upstream-variant-2KB, reference, synonymous-codon
rs2071543 Likely benign 32,843,852(-) GAATG(A/C)AGGTC intron-variant, upstream-variant-2KB, reference, missense
rs79482999 Likely benign 32,843,045(+) TGAAC(A/G)TTCCT upstream-variant-2KB, reference, synonymous-codon
rs41270492 Uncertain significance 32,842,188(+) CGGTA(C/T)TGGCA upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for PSMB8-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1119076 CNV deletion 24896259
nsv830633 CNV loss 17160897

Relevant External Links for PSMB8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PSMB8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PSMB8-AS1 Gene

Disorders for PSMB8-AS1 Gene

Relevant External Links for PSMB8-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PSMB8-AS1

No disorders were found for PSMB8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PSMB8-AS1 Gene

Publications for PSMB8-AS1 Gene

  1. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 60
  2. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud PJ … BRIGHT Consortium (American journal of human genetics 2009) 3 60

Products for PSMB8-AS1 Gene

Sources for PSMB8-AS1 Gene

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