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Aliases for PSMB4 Gene

Aliases for PSMB4 Gene

  • Proteasome Subunit Beta 4 2 3 5
  • Proteasome (Prosome, Macropain) Subunit, Beta Type, 4 2 3
  • Multicatalytic Endopeptidase Complex Beta Chain 3 4
  • 26 KDa Prosomal Protein 3 4
  • Proteasome Beta Chain 3 4
  • Macropain Beta Chain 3 4
  • Proteasome Chain 3 3 4
  • EC 3.4.25.1 4 61
  • HsBPROS26 3 4
  • PROS-26 3 4
  • PROS26 3 4
  • HsN3 3 4
  • Testis Tissue Sperm-Binding Protein Li 79P 3
  • Proteasome Subunit, Beta Type, 4 3
  • Proteasome Subunit Beta Type-4 3
  • Proteasome Subunit HsN3 3
  • HN3 3

External Ids for PSMB4 Gene

Previous GeneCards Identifiers for PSMB4 Gene

  • GC01P149213
  • GC01P147119
  • GC01P148147
  • GC01P148588
  • GC01P148185
  • GC01P149610
  • GC01P122750

Summaries for PSMB4 Gene

Entrez Gene Summary for PSMB4 Gene

  • The proteasome is a multicatalytic proteinase complex with a highly ordered ring-shaped 20S core structure. The core structure is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta subunits. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiquitin-dependent process in a non-lysosomal pathway. An essential function of a modified proteasome, the immunoproteasome, is the processing of class I MHC peptides. This gene encodes a member of the proteasome B-type family, also known as the T1B family, that is a 20S core beta subunit. [provided by RefSeq, Jul 2008]

GeneCards Summary for PSMB4 Gene

PSMB4 (Proteasome Subunit Beta 4) is a Protein Coding gene. Diseases associated with PSMB4 include Cystic Fibrosis. Among its related pathways are RET signaling and Regulation of activated PAK-2p34 by proteasome mediated degradation. GO annotations related to this gene include threonine-type endopeptidase activity and lipopolysaccharide binding.

UniProtKB/Swiss-Prot for PSMB4 Gene

  • The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Mediates the lipopolysaccharide-induced signal macrophage proteasome (By similarity). SMAD1/OAZ1/PSMB4 complex mediates the degradation of the CREBBP/EP300 repressor SNIP1.

Gene Wiki entry for PSMB4 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PSMB4 Gene

Genomics for PSMB4 Gene

Regulatory Elements for PSMB4 Gene

Enhancers for PSMB4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F151940 1.4 FANTOM5 Ensembl ENCODE 11.8 +544.6 544564 7.6 PKNOX1 SIN3A FEZF1 ZNF2 ZNF416 FOS DEK MCM3 SP3 JUNB GABPB2 MRPL9 LYSMD1 THEM4 ENSG00000229021 KRT8P28 SPTLC1P4 ENSG00000226716 HMGN3P1 LCEP4
GH01F151967 0.9 FANTOM5 Ensembl ENCODE 11.8 +569.2 569184 1.8 PKNOX1 ARID4B SIN3A FEZF1 ZNF2 ZNF143 ZNF416 ZNF548 FOS DEK GABPB2 MRPL9 LYSMD1 ENSG00000229021 KRT8P28 SPTLC1P4 ENSG00000226716 HMGN3P1 LCEP4 S100A10
GH01F151308 1.5 FANTOM5 Ensembl ENCODE 11 -87.6 -87598 6.1 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC GABPB2 SETDB1 MRPL9 GOLPH3L ZNF687 PRPF3 ADAMTSL4 RFX5 VPS72 UBE2D3P3
GH01F151479 0.7 ENCODE 10.4 +80.1 80120 1.0 CGN ENSG00000252840 TUFT1 MIR554 RPS10P6 RNU6-1062P PSMB4 ENSG00000232536 MRPL9 OAZ3
GH01F151294 0.7 ENCODE 10.4 -104.4 -104352 1.6 ZNF121 ZNF316 POLR2A MAFG ZNF600 EMSY MAFK ZBTB17 ENSG00000224645 RFX5 GBAT2 PSMB4 SELENBP1 S100A11 GC01P151286 PIR40750 RN7SL444P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around PSMB4 on UCSC Golden Path with GeneCards custom track

Promoters for PSMB4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000079830 166 1801 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1

Genomic Location for PSMB4 Gene

Chromosome:
1
Start:
151,399,534 bp from pter
End:
151,401,944 bp from pter
Size:
2,411 bases
Orientation:
Plus strand

Genomic View for PSMB4 Gene

Genes around PSMB4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PSMB4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PSMB4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PSMB4 Gene

Proteins for PSMB4 Gene

  • Protein details for PSMB4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P28070-PSB4_HUMAN
    Recommended name:
    Proteasome subunit beta type-4
    Protein Accession:
    P28070
    Secondary Accessions:
    • B2R9L3
    • P31148
    • Q5SZS5
    • Q6IBI4
    • Q969L6

    Protein attributes for PSMB4 Gene

    Size:
    264 amino acids
    Molecular mass:
    29204 Da
    Quaternary structure:
    • The 26S proteasome consists of a 20S proteasome core and two 19S regulatory subunits. The 20S proteasome core is composed of 28 subunits that are arranged in four stacked rings, resulting in a barrel-shaped structure. The two end rings are each formed by seven alpha subunits, and the two central rings are each formed by seven beta subunits. The catalytic chamber with the active sites is on the inside of the barrel. Interacts with HIV-1 TAT and HIV-1 NEF proteins. Interaction with HTLV-1 TAX protein favors NFKB1 activation. Interacts with bacterial lipopolysaccharide (LPS) (By similarity). Forms a ternary complex with SMAD1 and OAZ1 before PSMB4 is incorporated into the 20S proteasome. Interacts with PRPF19.

    Three dimensional structures from OCA and Proteopedia for PSMB4 Gene

neXtProt entry for PSMB4 Gene

Selected DME Specific Peptides for PSMB4 Gene

P28070:
  • LGASGDYAD
  • QMVIDEEL
  • RRSKMNPLWN
  • LGSYGSL
  • AIHSWLTRAMY
  • GVVIAAD
  • VLYYRDARSYNRF
  • GESFLGYVD
  • PITRTQNPMVTGTSVLG

Post-translational modifications for PSMB4 Gene

  • Ubiquitination at Lys 109
  • Modification sites at PhosphoSitePlus

Other Protein References for PSMB4 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains & Families for PSMB4 Gene

Gene Families for PSMB4 Gene

Suggested Antigen Peptide Sequences for PSMB4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P28070

UniProtKB/Swiss-Prot:

PSB4_HUMAN :
  • Belongs to the peptidase T1B family.
Family:
  • Belongs to the peptidase T1B family.
genes like me logo Genes that share domains with PSMB4: view

Function for PSMB4 Gene

Molecular function for PSMB4 Gene

GENATLAS Biochemistry:
multicatalytic proteinase complex (20s),proteasome (prosome,macropain) component,beta 4 (HSBpros26),29.2kDa
UniProtKB/Swiss-Prot CatalyticActivity:
Cleavage of peptide bonds with very broad specificity.
UniProtKB/Swiss-Prot Function:
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Mediates the lipopolysaccharide-induced signal macrophage proteasome (By similarity). SMAD1/OAZ1/PSMB4 complex mediates the degradation of the CREBBP/EP300 repressor SNIP1.
UniProtKB/Swiss-Prot Induction:
Up-regulated in fibrolamellar carcinomas.

Enzyme Numbers (IUBMB) for PSMB4 Gene

Gene Ontology (GO) - Molecular Function for PSMB4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001530 lipopolysaccharide binding IEA --
GO:0004175 endopeptidase activity IEA --
GO:0004298 threonine-type endopeptidase activity IEA --
GO:0005515 protein binding IPI 25416956
GO:0008233 peptidase activity IEA --
genes like me logo Genes that share ontologies with PSMB4: view
genes like me logo Genes that share phenotypes with PSMB4: view

Animal Model Products

miRNA for PSMB4 Gene

miRTarBase miRNAs that target PSMB4

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PSMB4 Gene

Localization for PSMB4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PSMB4 Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PSMB4 Gene COMPARTMENTS Subcellular localization image for PSMB4 gene
Compartment Confidence
cytosol 5
extracellular 5
nucleus 5
cytoskeleton 2
peroxisome 1

Gene Ontology (GO) - Cellular Components for PSMB4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000502 proteasome complex IDA,TAS 17323924
GO:0005634 nucleus TAS 16130169
GO:0005654 nucleoplasm TAS --
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with PSMB4: view

Pathways & Interactions for PSMB4 Gene

SuperPathways for PSMB4 Gene

SuperPathway Contained pathways
1 Regulation of activated PAK-2p34 by proteasome mediated degradation
.78
.32
2 RET signaling
3 Chks in Checkpoint Regulation
4 HIV Life Cycle
.45
5 Class I MHC mediated antigen processing and presentation
genes like me logo Genes that share pathways with PSMB4: view

Gene Ontology (GO) - Biological Process for PSMB4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000165 MAPK cascade TAS --
GO:0000209 protein polyubiquitination TAS --
GO:0002223 stimulatory C-type lectin receptor signaling pathway TAS --
GO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent TAS --
GO:0002862 negative regulation of inflammatory response to antigenic stimulus IEA --
genes like me logo Genes that share ontologies with PSMB4: view

No data available for SIGNOR curated interactions for PSMB4 Gene

Drugs & Compounds for PSMB4 Gene

(3) Drugs for PSMB4 Gene - From: DrugBank and DGIdb

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Bortezomib Approved, Investigational Pharma inhibitor, other Proteosome and NF-kappaB inhibitor, Other, Proteasome inhibitors 794
carfilzomib Approved Pharma other, Inhibitor Other, 20S Proteasome Inhibitor 0
(3AR,6R,6AS)-6-((S)-((S)-CYCLOHEX-2-ENYL)(HYDROXY)METHYL)-6A-METHYL-4-OXO-HEXAHYDRO-2H-FURO[3,2-C]PYRROLE-6-CARBALDEHYDE Experimental Pharma Target 0
genes like me logo Genes that share compounds with PSMB4: view

Transcripts for PSMB4 Gene

Unigene Clusters for PSMB4 Gene

Proteasome (prosome, macropain) subunit, beta type, 4:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PSMB4 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b
SP1: - - - - - -
SP2: - - - - -
SP3: - -
SP4: -
SP5: -
SP6: - - - -
SP7: -
SP8:
SP9: -

Relevant External Links for PSMB4 Gene

GeneLoc Exon Structure for
PSMB4
ECgene alternative splicing isoforms for
PSMB4

Expression for PSMB4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PSMB4 Gene

Protein differential expression in normal tissues from HIPED for PSMB4 Gene

This gene is overexpressed in Liver, secretome (6.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for PSMB4 Gene



Protein tissue co-expression partners for PSMB4 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of PSMB4 Gene:

PSMB4

SOURCE GeneReport for Unigene cluster for PSMB4 Gene:

Hs.89545
genes like me logo Genes that share expression patterns with PSMB4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for PSMB4 Gene

Orthologs for PSMB4 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for PSMB4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PSMB4 34 35
  • 99.75 (n)
cow
(Bos Taurus)
Mammalia PSMB4 34 35
  • 90.91 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia PSMB4 35
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PSMB4 34 35
  • 89.65 (n)
mouse
(Mus musculus)
Mammalia Psmb4 34 16 35
  • 87.88 (n)
rat
(Rattus norvegicus)
Mammalia Psmb4 34
  • 87.21 (n)
oppossum
(Monodelphis domestica)
Mammalia PSMB4 35
  • 86 (a)
OneToOne
chicken
(Gallus gallus)
Aves PSMB4 34 35
  • 72.87 (n)
lizard
(Anolis carolinensis)
Reptilia PSMB4 35
  • 83 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia psmb4 34
  • 71.26 (n)
Str.129 34
African clawed frog
(Xenopus laevis)
Amphibia psmb4-prov 34
zebrafish
(Danio rerio)
Actinopterygii psmb4 34 35
  • 74.42 (n)
Dr.15385 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP011444 34
  • 54.28 (n)
fruit fly
(Drosophila melanogaster)
Insecta Prosbeta7 34 35
  • 51.46 (n)
CG12000 36
  • 39 (a)
worm
(Caenorhabditis elegans)
Secernentea pbs-7 35
  • 33 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFR258W 34
  • 55.16 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PRE4 34 35 37
  • 51.65 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D11506g 34
  • 51.34 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons PBG1 34
  • 53.55 (n)
rice
(Oryza sativa)
Liliopsida Os09g0515200 34
  • 50.68 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU07365 34
  • 50.75 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPBC577.10 34
  • 49.85 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.4701 34
Species where no ortholog for PSMB4 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PSMB4 Gene

ENSEMBL:
Gene Tree for PSMB4 (if available)
TreeFam:
Gene Tree for PSMB4 (if available)

Paralogs for PSMB4 Gene

No data available for Paralogs for PSMB4 Gene

Variants for PSMB4 Gene

Sequence variations from dbSNP and Humsavar for PSMB4 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1052721 -- 151,400,650(+) GTATC(C/T)CTTCT intron-variant
rs111362043 -- 151,400,853(+) AGTAG(-/T)TAAGT intron-variant
rs111502283 -- 151,399,630(+) CGGGG(C/G)GTCCG reference, missense
rs111777477 -- 151,399,248(+) AAAAA(-/T)AAAAA upstream-variant-2KB
rs112085237 -- 151,400,589(+) GAGAG(C/G)TTCAT splice-donor-variant

Structural Variations from Database of Genomic Variants (DGV) for PSMB4 Gene

Variant ID Type Subtype PubMed ID
dgv36n27 CNV gain 19166990
dgv53e214 CNV gain 21293372
dgv564n54 CNV gain 21841781
esv2758969 CNV gain 17122850
esv34461 CNV gain 17911159
esv3587525 CNV gain 21293372
esv3587526 CNV loss 21293372
esv3890638 CNV gain 25118596
esv3894200 CNV gain 25118596
nsv1161560 CNV duplication 26073780
nsv441714 CNV gain 18776908
nsv470737 CNV gain 18288195
nsv818467 CNV gain 17921354
nsv824575 CNV gain 20364138
nsv831581 CNV loss 17160897
nsv8380 CNV gain 18304495

Variation tolerance for PSMB4 Gene

Residual Variation Intolerance Score: 22.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.60; 82.63% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PSMB4 Gene

Human Gene Mutation Database (HGMD)
PSMB4
SNPedia medical, phenotypic, and genealogical associations of SNPs for
PSMB4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PSMB4 Gene

Disorders for PSMB4 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PSMB4 Gene - From: GeneCards

Disorder Aliases PubMed IDs
cystic fibrosis
  • pseudomonas aeruginosa chronic infection by, in cystic fibrosis
- elite association - COSMIC cancer census association via MalaCards
Search PSMB4 in MalaCards View complete list of genes associated with diseases

Relevant External Links for PSMB4

Genetic Association Database (GAD)
PSMB4
Human Genome Epidemiology (HuGE) Navigator
PSMB4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PSMB4
genes like me logo Genes that share disorders with PSMB4: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PSMB4 Gene

Publications for PSMB4 Gene

  1. Sequence analyses and inter-species comparisons of three novel human proteasomal subunits, HsN3, HsC7-I and HsC10-II, confine potential proteolytic active-site residues. (PMID: 7918633) Nothwang H.G. … Ichihara A. (Biochim. Biophys. Acta 1994) 2 3 4 64
  2. Additive loss-of-function proteasome subunit mutations in CANDLE/PRAAS patients promote type I IFN production. (PMID: 26524591) Brehm A. … Goldbach-Mansky R. (J. Clin. Invest. 2015) 3 4 64
  3. Assessment of a polymorphism of SDK1 with hypertension in Japanese Individuals. (PMID: 19851296) Oguri M. … Yamada Y. (Am. J. Hypertens. 2010) 3 46 64
  4. Association of genetic variants with hemorrhagic stroke in Japanese individuals. (PMID: 20198315) Yoshida T. … Yamada Y. (Int. J. Mol. Med. 2010) 3 46 64
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64

Products for PSMB4 Gene

Sources for PSMB4 Gene

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